ID:

dsi_27649

 Coordinate:

3r:4511767-4511916 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.0 -13.8 -13.8

Flybase annnotation

exon [3r_4511551_4511766_-]; CDS [3r_4511551_4511766_-]; intron [3r_4511767_4512122_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTAACTTTTAAAAAGATTTTGTTGAATACGCGTTTAATATTTTTAGTACGGGAAAATACGGTATAATTTTCCTATCTGCATGAACTCATGTTTTCTGTTTATGACACTCCTGTAGTAAGTGAGAGATGGTTCAATATGGATTTGATGTTTTTTGCCTACCAAAATGCCAAAATTAATTATCTAAATGATCCTGTGTAGGCTGCTGACATGATTTTGCTGGACGACAACTTTGCCTCCATTGTGACTGG
***********************************************************************((..((((...(((((.(((.(((((..(((((.(((....))).))))).)))))))))))))....))))..)).****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................................................................TTTTGCTGGACGACAACT................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGACATGATTTTGCTGGACGACAACTT.................. 27 0 1 3.00 3 0 0 0 2 0 0 0 0 0 1
......................................................................................................................................................................................................................TTTGCTGGACGACAACTTTGCCT............. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GACATGATTTTGCTGGAC.......................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GATTTTGCTGGACGACAACTTTGCCT............. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTGACATGATTTTGCTGGACGAC....................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCTGGACGACAACTTTGCCTCC........... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGACATGATTTTGCTGGACGACAACT................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................TGCTGGACGACAACTTTGCCT............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCTGACATGATTTTGCTGGAC.......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGCTGGACGACAACTTTGCCTC............ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATGCTGGACGACAACTTTGCCTCC........... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GATTTTGCTGGACGACAACTTTGCCTCC........... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTGCTGGACGACAACTT.................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................TCCTATCTGCATGAACTCATGTTTTCT........................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATGATTTTGCTGGACGACAACTTTGCCT............. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TGATTTTGCTGGACGACAACTTTGCCT............. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GACATGATTTTGCTGGACG......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGCTGGACGACAACTTTGCCT............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GATTTTGCTGGACGACAACTTTCCTC............. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCTGACATGATTTTGCTGG............................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................GAGAGATGGTTCAATATGGATTTGAT...................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TGCTGACATGATTTTGCTGGACGACA...................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CATGATTTTGCTGGACGACA...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................ATGGACTCATGTTCTCTGT...................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................CTTTGCCTCCATTGTGAC... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................TGTTTTATACCTACCAAAATGGCA............................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................TTTGCTGGACGACAACTTTGCCTC............ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................TGTGTAGGCTGCTGACATGATTTTGCTG............................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GATGGACGACTACTTTGCC.............. 19 2 3 0.67 2 0 1 1 0 0 0 0 0 0 0
..................................................................................TGAGCTCATTTTTACTGTTTAT.................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................GCTGACATTATTTTGCTG............................. 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
......................................................................TTCCTACCTGCATGA..................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TGCCAACCAAAATGCCGAAACT.......................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................TATGATCCTAGGTAGGCTG.............................................. 19 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.....................................................................TTTCCGACCTGCATGAA.................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0
......................................................................TTCCGATCTGCATGA..................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0
.................................................................................ATGAACTCATGTGTTTGGTT..................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

ATAATTGAAAATTTTTCTAAAACAACTTATGCGCAAATTATAAAAATCATGCCCTTTTATGCCATATTAAAAGGATAGACGTACTTGAGTACAAAAGACAAATACTGTGAGGACATCATTCACTCTCTACCAAGTTATACCTAAACTACAAAAAACGGATGGTTTTACGGTTTTAATTAATAGATTTACTAGGACACATCCGACGACTGTACTAAAACGACCTGCTGTTGAAACGGAGGTAACACTGACC
******************************************************************************************************((..((((...(((((.(((.(((((..(((((.(((....))).))))).)))))))))))))....))))..)).*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................TTATACCTAGACTACAA................................................................................................... 17 1 1 1.00 1 1 0 0 0
..................................................................................................................................CAAGTTATCCCTAAACTATTA................................................................................................... 21 3 4 0.25 1 0 1 0 0
...............................................................................................................................................................TGGTCTCACGGTTTGAATTA....................................................................... 20 3 6 0.17 1 0 0 1 0
..............................................................................................................................................................ATGGTTTTACGATATTAAT......................................................................... 19 2 6 0.17 1 0 0 0 1

Generated: 04/24/2015 at 09:10 AM