ID:

dsi_27646

 Coordinate:

2r:4936618-4936767 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.3 -44.0 -44.0

Flybase annnotation

CDS [2r_4936768_4936893_-]; exon [2r_4936768_4937165_-]; intron [2r_4936461_4936767_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGGACGCATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTGAGAAAGGTGAGTTCGCTATTTTGCGATGATATCGCGGGATCTTATGTTATTACAAATAGTGACATAGAGACTCGCATACTAAAAAATAGCAGAGTTTACTAGCACCCTGGATAGTTTTGAATCCAATGCTATCCAGAGATACTGATAAAGTTTATTTTACAATCGATTTTTAATGGCTTAAAAAATGTAAATCATTAAATTAATTT
**************************************************((((((((((((((((.......(((.(((((.(((((((((((((....))))))))).))))))))))))....)))))))).)))))))).......(((((((((.(((....))).)))))))))....(((.....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 GSM343915
embryo
..........................................................................................TTATTACAAATAGTACCA.............................................................................................................................................. 18 2 14 1.29 18 0 0 5 0 9 2 0 1 1
.............................................................................................TTACAAATAGTGACATAAAGACTCGCA.................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................TGTCAAAAGCAGAACTGAGAAAGGTGAG................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................AAAGCAGAACTGAGAAAGGTG..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................TGTCAAAAGCAGAACTGAGAAAGG....................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................AATAGTGACATAGAGACTCGC................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................TGAGAAAGGTGAGTTCGCTATTTTGC...................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ACTGATAAAGTTTATTTT................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................GATGATATCGCGAGATCA.................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0
.......................................AAGTAAGAAAGGAGAGTTCG............................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0
..................................................GTGAGTGCGCTATTT......................................................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0
...............................................................TTTGCGATGATCTCG............................................................................................................................................................................ 15 1 20 0.10 2 0 0 0 0 0 0 2 0 0
......................................................................TGATATCGCGAGATCA.................................................................................................................................................................... 16 2 13 0.08 1 0 1 0 0 0 0 0 0 0
........................................................................ATTTCGCGGGATCGTA.................................................................................................................................................................. 16 2 19 0.05 1 1 0 0 0 0 0 0 0 0
........................GATAGTCAAAAGAAGAA................................................................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TACCTGCGTACAGGTTAGGGTTACCTAACAGTTTTCGTCTTGACTCTTTCCACTCAAGCGATAAAACGCTACTATAGCGCCCTAGAATACAATAATGTTTATCACTGTATCTCTGAGCGTATGATTTTTTATCGTCTCAAATGATCGTGGGACCTATCAAAACTTAGGTTACGATAGGTCTCTATGACTATTTCAAATAAAATGTTAGCTAAAAATTACCGAATTTTTTACATTTAGTAATTTAATTAAA
**************************************************((((((((((((((((.......(((.(((((.(((((((((((((....))))))))).))))))))))))....)))))))).)))))))).......(((((((((.(((....))).)))))))))....(((.....))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body
...........................................CTCTTTCCACTCAAGCGATA........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
....................................................................................................ATCACTGTATCTCTGAGCG................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................TTTTTTATCGTCTCAAATGATCGGTG.................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................AATCGTGGGACCTATCAAAACTTAGGT................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................TGTTAGCTAAAAATTACCGAA........................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................AGCGGCCTAGAATAC................................................................................................................................................................ 15 1 4 0.25 1 0 0 0 0 1 0
...........................................................................................................................................................................................CTATTTCAAGTAAAAGGTT............................................ 19 2 6 0.17 1 0 0 0 0 0 1
....................................................................................................................................................................................................AAAAAATGTTAGCTAAA..................................... 17 1 13 0.08 1 0 1 0 0 0 0
......................................................................................................................................................................................................GAAATGTTAGCTAAA..................................... 15 1 20 0.05 1 0 1 0 0 0 0

Generated: 04/23/2015 at 08:55 AM