ID:

dsi_27632

 Coordinate:

3l:20572839-20573132 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.1 -41.9 -41.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

TAGTATGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCGCCGACGGCAAGTTTTCCCTGATATTTGTTGCGAATTGTTATAAAAATCGATCGCAGATTTTTCCGTATGCGAATGCGATAAATAAAGTGGCACAAAATGTAAAGATTCAAGTCAAGATTATATCGGTAATCGGAAAGAACAGCGAAAACGGTGATTGAAACGTAGAAAAGTGATCAAAAATGCAAATGCAAAAGCGATTGCCCGAGAAGTGAGAGGGTGTGCGTGTGTGCTGTATGCTTGTGTGCGTGCAAAAAGAGCTGCAGCAAATTAAATATAAATAATAATGCCCAAGTGCCGTTGGTTGACAAATAATTGTGGCGCAAAATCATTAAATGATTTTCAAGACGTGT
******************************************************************************.((((.(((..((((.((((...((((((((..(((.....((((((((....((((....(((......)))...))))..))).))))))))..))))))))...))))...))))..))).))))............(((..(((((...(((...(((..(((((...........)))))..)))...))))))))..)))..************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 O002
Head
..........................................................................................................................................................................TAATCGGAAAGAACAGCGAAAACGCTT..................................................................................................................................................................................................... 27 2 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................CGTGTGTGCTGTATGCTTGTG............................................................................................................ 21 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................CAAAAGCGATTGCCTGAGTAG............................................................................................................................................. 21 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................TTGTTATAAAAATCGATCGCA....................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................CTGGCAACACTGGCTCTGCC............................................................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGGAAAGAACAGCGAAAACGG....................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GTGTGCTGTAGGCTT............................................................................................................... 15 1 6 1.33 8 0 0 1 3 0 0 0 0 2 2 0 0
..................................................GCAAGTTTTCCCTGATATTTGTTGCG.............................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAGAAAAGTGATCAAAAATGCA...................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................AATTGTTATAAAAATCGATCG......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GAATTGTTATAAAAATCGATCG......................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CGAATTGTTATAAAAATCGATCG......................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................CTGGCAACACTGGCTCTG................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................GTTATAAAAATCGATCGCAC...................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................AATTGTTATAAAAATCGATCGCAGAT.................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GGTTGACGAATGATTGTGGCGT............................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGAATTGTTATAAAAATCGATCGC........................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................TTGTTATGAAAATCGATCGCA....................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TATAAAAATCGATCGCAGA..................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................AGATGATATCGGTAAT............................................................................................................................................................................................................................ 16 1 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGCGTGCAAAAAGAGCTGCAGC...................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................CTGGCAACACTCGCTCTGCC............................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAAGTCAAGATTGTATCGG................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............TGTGCTACCTGGCAACACTGG...................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................CCTGGCAACACTGGCTCTGCCGCCGA.......................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................GTTATAAAAATCGATCGCAGAT.................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AATGCAAAAGCGATTGCCCGAGA............................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................TTTCCCTGATATTTGTTGCGAATTGTT....................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................ATTGAAACGTAGAAAAGTGAT................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................GTTATAAAAATCGATCGCAG...................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................ACTGGCTCTGCCGCCGACGGCAAGTT................................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................GACGGCAAGTTTTCCCT........................................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................GCAACACTGGCTCTGCCGCCGACGG....................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................CTGGCAACACTGGCTCTGC................................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AATCGGAAAGAACAGCGAAAACGGTGA.................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................GTTGCGAATTGTTATAA................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAAGTCAAGATTATATCGG................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTCAAGTCAAGATTATATCGGTAATCGGA........................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................ATCGATCGCAGATTTTTCCG............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................AAGCGATTGCCCGAGAAGTGA.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................AAATCGATCGCAGATTTTTC............................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGGAAAGAACGGCGAAAACGG....................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATCGGAAAGAACAGCGAAAACGCAA..................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................GAAAACGGTGATTGAAACGT........................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......TTTCTGTCTCTGCTGCCTGGC.............................................................................................................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATTGTTATAAAAATCGATCGCAGATTT.................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CGATTGCCCGAGAAGTGAGAG....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTGCATGCTTGGGTGCGTGGA.................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CCGGGAAGTGAGAGCGTGG.................................................................................................................................. 19 3 7 0.29 2 0 0 0 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................TGTGTGAGTGCAGAAGGAGCTG.......................................................................................... 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................AGAAATAATTGTGGCGCA............................ 18 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GAAATAATTGTGGCGC............................. 16 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CGGGAAGTGAGAGCGTG................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................CCAAATGCCGTTCGTTTACA........................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................................................................TAATGATTTTCAAGACT... 17 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................CCGTATGCGAAAGTGAT............................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................TGCAAAGATTCAAGT.............................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................GAACAGCGAAAAGGG....................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................................................................TAATGATTTTCAAGACA... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTAGTATGGTGATCAAAAA.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATCATACAAAGACAGACACGATGGACCGTTGTGACCGAGACGGCGGCTGCCGTTCAAAAGGGACTATAAACAACGCTTAACAATATTTTTAGCTAGCGTCTAAAAAGGCATACGCTTACGCTATTTATTTCACCGTGTTTTACATTTCTAAGTTCAGTTCTAATATAGCCATTAGCCTTTCTTGTCGCTTTTGCCACTAACTTTGCATCTTTTCACTAGTTTTTACGTTTACGTTTTCGCTAACGGGCTCTTCACTCTCCCACACGCACACACGACATACGAACACACGCACGTTTTTCTCGACGTCGTTTAATTTATATTTATTATTACGGGTTCACGGCAACCAACTGTTTATTAACACCGCGTTTTAGTAATTTACTAAAAGTTCTGCACA
************************************************************************************************************.((((.(((..((((.((((...((((((((..(((.....((((((((....((((....(((......)))...))))..))).))))))))..))))))))...))))...))))..))).))))............(((..(((((...(((...(((..(((((...........)))))..)))...))))))))..)))..****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M023
head
..........................................................................................AGCTAGCGTCTAAAAAGGCAT........................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................TTATTACGGGTTCACGGCAAC.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CATACGAACACACGCACGTTT.................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ACGGGCTCTTCACTCTCCCAC................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................AGCTAGCGTCTAAAAAGGCA............................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACTAAAAGTTCTG.... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ATTATTACGGGTTCACGGCGA................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................ACGGCGGCTGCCGTTCAAAAG.............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................TTCACCGTGTTTTACATT........................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................CGTTGTGACCGAGACGGCGGCT.......................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................CTATTTATTTCACCGTGT................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TTATTATTACGGGTTAGCGGCGA................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GGCAACCAACTGTTTATTAAC................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................GCTAGCGTCTAAAAAGGCAT........................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTACGGGTTCACGGCGGCCAA............................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................GGCTCTTCACTCTCCCACGTGC............................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GACGTTGTTGAATTTATAT.......................................................................... 19 2 13 0.62 8 0 0 0 1 4 0 0 2 0 1
..............................................................................................................................................................................................................................................................................................................ACGTCGTTGAAATTATAT.......................................................................... 18 2 20 0.40 8 0 0 0 4 4 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TTGACGTTGTTTAATTTATAT.......................................................................... 21 2 7 0.29 2 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................CTAAGTTCAGTTTTCACATAG.................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.........AGACAGACACTATAGACCTT............................................................................................................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TCACTGGTTTTGACGTTGACGT................................................................................................................................................................ 22 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................GGCTCTTGACTCTGCCAGA.................................................................................................................................. 19 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0
.......................................AGGGAGGCTGCCGTTCA.................................................................................................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................TTACTAAAAGTTCTGA... 16 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCACTAGTTTTTCTGTTTA................................................................................................................................................................... 19 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................ACTCTATTTGTTTCACCGAG................................................................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................AGCCACTAGCCTCTCTTGG................................................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0
...................................CGAGATGGGGGCTGCCAT..................................................................................................................................................................................................................................................................................................................................................... 18 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
.................................................CCATTCAAAAGGGACGCTA...................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGACGTCGTTGAATTTAT............................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................ATACGAACACAGGCA....................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................ACGTTGTTGAATTTATAT.......................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................AGCCTCTCTTGTCGAT............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20572789-20573182 - dsi_27632 TAGTATGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGATAAATAAAGTGGCACAAA-AT----GTAAAGATTCAAGTCAA-----GATTATATCGGTA---A-------------------TCG-GAAAGAACAGCGAAAACGGT-GATTGAAACGTAGA---------AA---AGTG------------ATC-AAAAATGCAAATGCAAAAGCGA----------------TTGCCCGAGAAGTGAGAGGGTGTGCGTGTGT--GCTGTATG--CTTGTGTGCG-------------T---------------GCAAAAAGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGGT-------TGACAAATAATTGT-------------GGCGCAAAATCATTAAATGATTTTCAAGAC----------GTGT
droSec2 scaffold_11:908528-908919 - TAGTATGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGATAGATAAAGTGGCACAAA-AT----GTAAAGATTCAAGTCCA-----GATTATATCGGTA---A-------------------TCG-GAAAGAACAGCGAAAACGGT-GATTAAAACGTAGA---------AA---AGTG------------ATC-AAAAATGCAAATGCAAAAGCAA----------------A--CCCGAGAAGTGAGAGGGTGTGAGTGTGT--GTTGTATG--CTTGTGTGCG-------------T---------------GCAAAAAGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGGT-------TGACAAATAATTGT-------------GGCGCAAAATCATTAAATGATTTTCAAGAC----------GTGT
dm3 chr3L:21020147-21020537 - TAGTAGTTTTCTGTCTGTGCTAGCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTCATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGATAGATAAAGTGGCACAAA-AT----GTAAAGATTCAAGACAA-----GTTTACATCGGTA---G-------------------TCG-GAAAGAACATCAAAAACGGC-GATTAAAACGTAGA---------AA---AGTG------------ATC-AAAAATGCAAATGCAAAAGCGA----------------TTGCCCGAGAAGTGAGAGGGTGTGCGTGTGT--GCTGTATG--CGTGTATGCG-------------T---------------GC---AAGA---GGTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGTT-------TGACAAATAATTGT-------------GGCGCAAAATCATTAAATGATTTTCAAGAC----------GTGT
droEre2 scaffold_4784:20701501-20701893 - TAGTAGGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGAGAGATAATGTGGCAGAAA-AT----GTAAAGAATCAAGCGAA-----AACTAGATCGGTA---A-------------------TCC-G-AAGGATACCGAAAACAAC-GATTAAAACGTAGA---------AA---AGTG------------ATCGAAAAATGCAAATGCGAAAGCGA----------------ATGCCCGAGAAGTGAGAGGGTATGCGTGTGC--GCTGTATG--CTTGTGTGTG-------------T---------------GTAAGAGGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGCT-------TGACAAATAGTTGT-------------GGCGCAAAATCATTAAATAATTTTCAAGAC----------G-AT
droYak3 3L:19510048-19510442 + TAGTACGTTTCAGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTAATAT-TTGTTGCGAA---TTG---GTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGAAAGAGAAAGTGGCACAAA-AT----GTAAAAAGTCAATCCAA-----AACTAGATCGGTA---A-------------------ACA-AAAGGAACACCGAAAACAAC-GATTAAAACGTAAA---------AA---AGTG------------TTTGAAAAATGCAAATGCGAAAGCGA----------------TTGCCCGAGAAGTGAGAGGGTGTGAGTGTTT--GCTGTATG--TTTGTGTGCG-------------T---------------GTAAGAAGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGTT-------TGACAAATAATTGT-------------GGCGCAAAATCATTACATGATTTTCAAGAC----------GGTT
droEug1 scf7180000409711:4979991-4980372 + CAGTAGGTTTT---------TATCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTACGTGAATTCGAAAGAGAAAGTGGTACAAA-AT----GTAGATAACC-ACCGAA-----ATCTAGATCGGCG---A-------------------ATG-G-AAAAACATCGATAATGAT-AATAAAAACGTAAA---------AA---AATG------------ATTGAAAAATGCAAATGCAAAAGCGA----------------ATGCCCGAGATGTGAGAGGGTATGCGAGTG----TTGAGTG--TGTGTTTGTG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAA-------ATATAAATAATAGTCTCCAAGTACCGTTGTT-------TGACAAATAATTGT-------------GTCGTAAAATGATTAAATGGCATTTAAGCC----------GAGT
droBia1 scf7180000302193:5021832-5022113 + -----------------------------------------------------------------------------------------------------------------------------------------------------CGAATGCGAAAGAGAAAGTGGCCCAAA-AT----GTAAAACACC-AGCGAA-----AACTAGATCGGTA---A-------------------CCT-CAAAGAACGCCGAAATGATA-GAATCAAACGTGAATTTAAT---AG---GGTG------------ATCGAAAAATGCAAATGCAAAAGCGA----------------ATGCCCGAGAAGTGAAGAGGTGTGCGTGC----GCTGTGTG----TGTGTGTG-------------T---------------GAAAGAAGA---GCTGCAACAAATGAA-------ATACAAATAATAGTGCACAAGTGCCGTTGTA-------TGACCGATAATTGT-------------GGCGCAAATGGATTA-ATGGCATTTAAGCC----------GTGT
droTak1 scf7180000415319:85075-85414 - -------------------------------------------------------------------GTT-TTCATCGATGTTTCTC-CACCT-CTATTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGAATGCGAATGCGAAAGAGAAAGTGGCACAAA-AT----GTAAAAAACC-AGCGAA-----AACTAGATCGGTA---AA------------------TCC-CAAAGAACGCCGAAAATAAG-GAGTGAAACGGA------------------TG------------ATCGAATAATGCAAATGCAAAAGCGA----------------ATGGCCGA---------AGGTGTGCGTGTATGTGCTGTGCGGGTGTGTGTGTG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAA-------ATATAAATAATAGTGCACAAGTGCCGTTGTG-------CGACAAGTAATTGT-------------GGCGCAAAGTGATTGAATGGCATTTAAGCC----------GTGT
droEle1 scf7180000491193:2341236-2341589 + ---------------------------CAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTTTGCGAATGCCAAAGAGAAAGTGGCACAAA-AT----GTAAAAAACC-TGCGAA-----AACTAGATCGGCA---A-------------------TCT-AAAAGAACACCGAAAAAAAT-A-ATAAAACGTAAA---------AA---TAAG------------ATCGAAAAGTGCAAATTCAAAAGCGA----------------ATGTCCGAGAAGAGA-----TGTGCGATTGT--GG--------TGTGTGTGTG-------------T---------------GAAAGAATA---GCTGCAACAAATTAA-------ATATAAATAATAGTGC-CAAGTGTTGATTTA-------TGACGAATGATTGT-------------GGCGCAAAATGATTAAATGGCATTTAAGCC----------GTGT
droRho1 scf7180000779801:57802-58156 - ---------------------------CAACACTGGCTACGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT--TGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGTGAATGCGAAAAAGAAAGTGGCACAAA-AT----GTAAAAAACC-AGCGAA-----AACTAGATCGGCA---A-------------------CCG-A-AAAAACACCGAAAATATC-AAATAAAACGTAAA---------AA---AAAG------------ATCAAAAAATGCAAATGCAAAAGCGA----------------ATGCCCGAGAAGTGAGAGGGTGTACGTGTGT--G-----------TGTGTGAG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAA-------ATATAAATAATAGTGC-CAAGTGCCGTTGTA-------TGACAAATAATTGT-------------GGCGCAAAATGATTAAATCGCATTTAAGCC----------GTGC
droFic1 scf7180000453929:171370-171712 - ------------------------------------CTCTACCG-------------CCGACGGCAAGTT--T-----------CCCTGATAT-TTGTTGCGAA---TTG---TTAAA-AAA--ATCGATCGCAGATTT-TC-CGTATGCGAATGCGAAAGAGAAAGTGGCACAAA-AT----GTAAAAA-CT-AGTGAA-----AACTAGATCGGCA---A-------------------ACG-CTTAGAACACCGAAAATAAT-GTTTAAAACGTAAA---------AA---A--G------------ATCGAAAAATGCAAATGCAGAAGCGA----------------ATGCCCGAGAAGTGAGAGGGTGTGCGTTCAA-------G------TGTGTGTG-------------T---------------GAAAGAAGA---GCTGCAACGAATTAA-------ATATAAATAATAATGC-CAAGTGCCGTTGAA-------TGACGAATAGTTGT-------------GGCGCAAAATGATTAAATGGCATTTAAGCC----------GTGT
droKik1 scf7180000302601:156091-156418 - --------------------------------------------------------------------------------------CTGATAT-TTGTTGCTAA---TTACAATTACA-AGA--ACCGATCGCAGATTTTTCCCGTGTCCGAAATCGAAAGTGAAAGTGGCACAAA-AT----GTAAAAAACCAAG--ATTGCTGCAT--GAGCGATA---AGATA-------------A-TTGTGAAATA----------------------AC-----------AAAAAAA---AGACTACGCGAAATGCCGAAAAACGCA-ATGCAAAA-------------------------------GTGAGAGGGCCTACGTGTGTGT-GTGTGTG--TCTGTGTCTGTGTGGTACTGCA-T---------------GAAAGAAGA---GCTGCAACAAATTA--------GTAAAAATAACAGTGC-CAAGTGCCGTTGGA-------TTGCAAATTGTTTT-------------CGCGCAAAGTGGC-AAATTGCCTTTGAGCC----------GTGT
droAna3 scaffold_13337:8676225-8676607 + ------------------GCTGCATGGTCACACTGCGTTAACCGTCTCGACTCACGACTCACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCAAA---TTG---TTACAGAAA--ATCGATCGCAGATT--TC-GGTGTGAGATTCAAATAGAGAAAGTGACACAAAAAT----GTAAATCGCCGAG--AA-----AAT--GATCGAAATGAATAATGGAATTCGCTAAAAA-TAA--------ACGAAAAGCAAGCATGTAAAACCAAAA------AAAAAAAAAACG------------ATT---C-------------------GAAATGCAAGTGCGA-A-----------------GGTGT-------------------------------GTGGGAGTGCG-T---------------GAAAGAAGAGCTGCTGCAACAAAATTA-------ATATAAATAACAGTGC-CAAGTGCCGTTGCTTTTGCTTTTGCAAATTGTTTT-------------CGCGCTAAATTGTAAA---GCGTTTAGGCCGTAAATTGC-GTGT
droBip1 scf7180000396541:817754-818085 + CA----------------------------------------------------------ACGGCAAGTT-TT-----------CCCCGATAT-TTGTTGCAAA---TTG---TTACAGAAA--ATCGATCGCAGATTTTTC-GGTGTGAGAATTAAATAGAGAAAGTGTCACAAAAAT----GTGAAACGCCGAG--AA-----AATT--ATCGATA---ATAAACGAATTTTTGAAAAA-TAA--------ACGCAAAACAAGCACGTAAAA------------------------------------GCCAAAAAATTC--------------GAAATGCAAGTGCGA-ACGAACG---TGTGG-------------------------------GAGTGCG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAATATATGTATATAAATAACAGTGC-CAAGTGCCGTTGCTT------TTGTAAATTGTTTT-------------CGCGCTAAATTGCAAA---GCGTTTAGGCCGTAAATTGC-GTGT
dp5 XR_group6:1128504-1128889 + TAGTATTTTTCCGTA-ACGCTCGACGGTCACAC----------------------------CGGCCAGTTTTT-----------CCCTGATATTTTGTTGCAAA-ATTTT---TTACAAAAAATATCGATCGCAGATTTTTCCCGT--------------GAGAAAGTGGCACAAAAATAAACGGAAAAAACCCAG--AATA--------AAGCGATA---AGAAATG---TCTCCAAAAA-TGT--------ACCCAGAA----------AAAC-----------AAAAAAAA---A------------CCCGTTC-------------------G--ATGCCAGTGTGTAA------TGGAGAGAGACCGATTGCGTGTGTGT-TTGGATG--TGTGTGTGTGTGTGTTAGTGCGGTGGAGGGGATACCGCAGATAGCTGC---GCTGCAACAAATTAA-------A-ATAAATAACAGTAT-CAAGTGCCGTTGCGTT-----CCACG-GGGATTGTGAATGTGTTTTTTCCCGCAAAATGTT------------------------GCGGCAT
droPer2 scaffold_12:1816673-1817057 + TAGTATTTTTCCGTA-ACGCTCGACGGTCACAC----------------------------CGGCCAGTTTTT-----------CCCTGATATTTTGTTGCAAAAATTTG---TTACAAAAAATATCGATCGCAGATTTTTCCCGT--------------GAGAAAGTGGCACAAAAATAAACGGAAAAAACCCAG--AATA--------AAGCGATA---AGAAATG---TCTCCAAAAA-TGT--------ACCCAGAA----------AAAC-----------AAAAAAAA---A------------CCCGTTC-------------------G--ATGCCAGTGTGTAA------TGGAGAGAGACCGATTGCGTGTGTGT-TTGGATG--TGTGTGTGTG--TGTTAGTGCGGTGGAGGGGATACCGCAGATAGCTGC---GCTGCAACAAATTAA-------A-ATAAATAACAGTAT-CAAGTGCCGTTGCGTT-----CCACG-GGGATTGTGAATGTGTTTTTTCCCGCAAAATGTT------------------------GCGGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGTATGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGATAAATAAAGTGGCACAAA-AT----GTAAAGATTCAAGTCAA-----GATTATATCGGTA---A-------------------TCG-GAAAGAACAGCGAAAACGGT-GATTGAAACGTAGA---------AA---AGTG------------ATC-AAAAATGCAAATGCAAAAGCGA----------------TTGCCCGAGAAGTGAGAGGGTGTGCGTGTGT--GCTGTATG--CTTGTGTGCG-------------T---------------GCAAAAAGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGGT-------TGACAAATAATTGT-------------GGCGCAAAATCATTAAATGATTTTCAAGAC----------GTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................CGTGTGT--GCTGTATG--CTTGTG................................................................................................................................................................................2112.00200000010010000000
...........................................................................................................TTG---TTATA-AAA--ATCGATCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000010000001000
.......................CTGGCAACACTGGCTCTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
..................................................................................................................................................................................................................................................CG-GAAAGAACAGCGAAAACGG.........................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
...............................................................GCAAGTT-TT-----------CCCTGATAT-TTGTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
....................................................................................................................................................................................................................................................................................TAGA---------AA---AGTG------------ATC-AAAAATGCA..............................................................................................................................................................................................................................................................2211.00100000010000000000
......................................................................................................AA---TTG---TTATA-AAA--ATCGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................GAA---TTG---TTATA-AAA--ATCGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
....................................................................................................CGAA---TTG---TTATA-AAA--ATCGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.......................CTGGCAACACTGGCTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.............................................................................................................G---TTATA-AAA--ATCGATCGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
......................................................................................................AA---TTG---TTATA-AAA--ATCGATCGCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
....................................................................................................CGAA---TTG---TTATA-AAA--ATCGATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000100000000000
..................................................................................................................TATA-AAA--ATCGATCGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGCG-------------T---------------GCAAAAAGA---GCTGCAGC...........................................................................................................................2211.00100000000001000000
...............TGTGCTACCTGGCAACACTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
......................CCTGGCAACACTGGCTCTGCCG-------------CCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.............................................................................................................G---TTATA-AAA--ATCGATCGCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................AATGCAAAAGCGA----------------TTGCCCGAGA.......................................................................................................................................................................................................................2311.00100010000000000000
.....................................................................T-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...........................................................................................................................................................................................................................................................................ATTGAAACGTAGA---------AA---AGTG------------AT.........................................................................................................................................................................................................................................................................2111.00100000000000001000
.............................................................................................................G---TTATA-AAA--ATCGATCGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...............................ACTGGCTCTGCCG-------------CCGACGGCAAGTT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
...........................................................GACGGCAAGTT-TT-----------CCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
..........................GCAACACTGGCTCTGCCG-------------CCGACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.......................CTGGCAACACTGGCTCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.........................................................................................................................................................................................................................A---A-------------------TCG-GAAAGAACAGCGAAAACGGT-GA.....................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
................................................................................................GTTGCGAA---TTG---TTATA-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
..............................................................................................................................................................................................TTCAAGTCAA-----GATTATATCGG.........................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................TTCAAGTCAA-----GATTATATCGGTA---A-------------------TCG-GA..........................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
............................................................................................................................ATCGATCGCAGATTTTTC-CG................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................AAGCGA----------------TTGCCCGAGAAGTGA..................................................................................................................................................................................................................2111.00100000000010000000
........................................................................................................................AA--ATCGATCGCAGATTTTTC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.............................................................................................................................................................................................................................A-------------------TCG-GAAAGAACAGCGAAAACGCA-A......................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
................................................................................................................................................................................................................................................................GAAAACGGT-GATTGAAACGT............................................................................................................................................................................................................................................................................................................2011.00100000000100000000
.......................................................................................................A---TTG---TTATA-AAA--ATCGATCGCAGATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................CGA----------------TTGCCCGAGAAGTGAGAG...............................................................................................................................................................................................................2111.00100000000001000000
droSec2
TAGTATGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGATAGATAAAGTGGCACAAA-AT----GTAAAGATTCAAGTCCA-----GATTATATCGGTA---A-------------------TCG-GAAAGAACAGCGAAAACGGT-GATTAAAACGTAGA---------AA---AGTG------------ATC-AAAAATGCAAATGCAAAAGCAA----------------A--CCCGAGAAGTGAGAGGGTGTGAGTGTGT--GTTGTATG--CTTGTGTGCG-------------T---------------GCAAAAAGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGGT-------TGACAAATAATTGT-------------GGCGCAAAATCATTAAATGATTTTCAAGAC----------GTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGTGCG-------------T---------------GCAAAAAGA---GC.................................................................................................................................2211.0010010
......................................................................................................AA---TTG---TTATA-AAA--ATCGATCGCAGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
.....TGTTTCTGTCTGTGCTACCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.................................................................................................................................................................ATAAAGTGGCACAAA-AT----G.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTGCG-------------T---------------GCAAAAAGA---GCTG...............................................................................................................................2011.0010001
...TATGTTTCTGTCTGTGCTACCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
..............................................................................................................................................................................................................................................................GCGAAAACGGT-GATTAAAACG.............................................................................................................................................................................................................................................................................................................2111.0011000
dm3
TAGTAGTTTTCTGTCTGTGCTAGCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTCATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGATAGATAAAGTGGCACAAA-AT----GTAAAGATTCAAGACAA-----GTTTACATCGGTA---G-------------------TCG-GAAAGAACATCAAAAACGGC-GATTAAAACGTAGA---------AA---AGTG------------ATC-AAAAATGCAAATGCAAAAGCGA----------------TTGCCCGAGAAGTGAGAGGGTGTGCGTGTGT--GCTGTATG--CGTGTATGCG-------------T---------------GC---AAGA---GGTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGTT-------TGACAAATAATTGT-------------GGCGCAAAATCATTAAATGATTTTCAAGAC----------GTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................TGTGCGTGTGT--GCTGTATG--CG....................................................................................................................................................................................2117.0070000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GCGTGTGT--GCTGTATG--CGTG..................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GAGGGTGTGCGTGTGT--GCTGTAT.........................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTGT--GCTGTATG--CGTGTATGC.............................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATAT-TTGTTGCGAA---TTG---T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCG-------------T---------------GC---AAGA---GGTGCA.............................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGTT-------TGACAAATAATTGT-------------............................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TATA-AAA--ATCGATCGCAGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTAGTTTTCTGTCTGTGCTAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000001000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................T--GCTGTATG--CGTGTATGCG-------------T---------------G..............................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000010000000000
................................................................................................................................................................................................................................................................AAAAACGGC-GATTAAAACGTAGA---------A...............................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TTGCCCGAGAAGTGAGAGGGTG...........................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AAGTGGCACAAA-AT----GTAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................ATA-AAA--ATCGATCGCAGATTTTTC-..................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGTGT--GCTGTATG--C.....................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGCG-------------T---------------GC---AAGA---GGTGCAGA...........................................................................................................................1912.0020000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGAGGGTGTGCGTGTGT--GCTG............................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010
............................................................................................................................ATCGATCGCAGATTTTTC-CG................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................ACTGGCTCTGCCG-------------CCGACGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................AA---TTG---TTATA-AAA--ATCGATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000
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droEre2
TAGTAGGTTTCTGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGAGAGATAATGTGGCAGAAA-AT----GTAAAGAATCAAGCGAA-----AACTAGATCGGTA---A-------------------TCC-G-AAGGATACCGAAAACAAC-GATTAAAACGTAGA---------AA---AGTG------------ATCGAAAAATGCAAATGCGAAAGCGA----------------ATGCCCGAGAAGTGAGAGGGTATGCGTGTGC--GCTGTATG--CTTGTGTGTG-------------T---------------GTAAGAGGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGCT-------TGACAAATAGTTGT-------------GGCGCAAAATCATTAAATAATTTTCAAGAC----------G-ATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................AAGTT-TT-----------CCCTGATAT-TTGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000020
........................................................................................GATAT-TTGTTGCGAA---TTG---TTATA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
..........................................................................................................................................................................................................................................................................................................................................AAGCGA----------------ATGCCCGAGAAGTGAGA................................................................................................................................................................................................................2311.0010001000
..............................CACTGGCTCTGCCG-------------CCGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000
......GTTTCTGTCTGTGCTACCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...............................................................................................................................................................................................................CTAGATCGGTA---A-------------------TCC-G-AAGGATACCG................................................................................................................................................................................................................................................................................................................................2611.0010000010
..................................................................................................................................................................................................................................................................................................................................................................GCCCGAGAAGTGAGAGGGTATGCGTG.....................................................................................................................................................................................................2611.0010000100
droYak3
TAGTACGTTTCAGTCTGTGCTACCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTAATAT-TTGTTGCGAA---TTG---GTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGCGAATGCGAAAGAGAAAGTGGCACAAA-AT----GTAAAAAGTCAATCCAA-----AACTAGATCGGTA---A-------------------ACA-AAAGGAACACCGAAAACAAC-GATTAAAACGTAAA---------AA---AGTG------------TTTGAAAAATGCAAATGCGAAAGCGA----------------TTGCCCGAGAAGTGAGAGGGTGTGAGTGTTT--GCTGTATG--TTTGTGTGCG-------------T---------------GTAAGAAGA---GCTGCAGCAAATTAA-------ATATAAATAATAATGCCCAAGTGCCGTTGTT-------TGACAAATAATTGT-------------GGCGCAAAATCATTACATGATTTTCAAGAC----------GGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................GTA---A-------------------ACA-AAAGGAACACCGAAAA............................................................................................................................................................................................................................................................................................................................2320.50110000000000
..................................................................................................TGCGAA---TTG---GTATA-AAA--ATCGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000010000
..................................................................................................................TATA-AAA--ATCGATCGCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCG-------------T---------------GTAAGAAGA---GCTG...............................................................................................................................2120.50101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAATTGT-------------GGCGCAAA....................................1920.50100000010000
.....................................................................................................................................................CGAATGCGAAAGAGAAAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100010000000
..................GCTACCTGGCAACACTGGCTCTGCCG-------------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50101000000000
............................AACACTGGCTCTGCCG-------------CCGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
droEug1
CAGTAGGTTTT---------TATCTGGCAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTACGTGAATTCGAAAGAGAAAGTGGTACAAA-AT----GTAGATAACC-ACCGAA-----ATCTAGATCGGCG---A-------------------ATG-G-AAAAACATCGATAATGAT-AATAAAAACGTAAA---------AA---AATG------------ATTGAAAAATGCAAATGCAAAAGCGA----------------ATGCCCGAGATGTGAGAGGGTATGCGAGTG----TTGAGTG--TGTGTTTGTG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAA-------ATATAAATAATAGTCTCCAAGTACCGTTGTT-------TGACAAATAATTGT-------------GTCGTAAAATGATTAAATGGCATTTAAGCC----------GAGTSizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------------------------------------------------------------------------------------------------------------------CGAATGCGAAAGAGAAAGTGGCCCAAA-AT----GTAAAACACC-AGCGAA-----AACTAGATCGGTA---A-------------------CCT-CAAAGAACGCCGAAATGATA-GAATCAAACGTGAATTTAAT---AG---GGTG------------ATCGAAAAATGCAAATGCAAAAGCGA----------------ATGCCCGAGAAGTGAAGAGGTGTGCGTGC----GCTGTGTG----TGTGTGTG-------------T---------------GAAAGAAGA---GCTGCAACAAATGAA-------ATACAAATAATAGTGCACAAGTGCCGTTGTA-------TGACCGATAATTGT-------------GGCGCAAATGGATTA-ATGGCATTTAAGCC----------GTGTSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------------GTT-TTCATCGATGTTTCTC-CACCT-CTATTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGAATGCGAATGCGAAAGAGAAAGTGGCACAAA-AT----GTAAAAAACC-AGCGAA-----AACTAGATCGGTA---AA------------------TCC-CAAAGAACGCCGAAAATAAG-GAGTGAAACGGA------------------TG------------ATCGAATAATGCAAATGCAAAAGCGA----------------ATGGCCGA---------AGGTGTGCGTGTATGTGCTGTGCGGGTGTGTGTGTG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAA-------ATATAAATAATAGTGCACAAGTGCCGTTGTG-------CGACAAGTAATTGT-------------GGCGCAAAGTGATTGAATGGCATTTAAGCC----------GTGTSizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------CAACACTGGCTCTGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTTTGCGAATGCCAAAGAGAAAGTGGCACAAA-AT----GTAAAAAACC-TGCGAA-----AACTAGATCGGCA---A-------------------TCT-AAAAGAACACCGAAAAAAAT-A-ATAAAACGTAAA---------AA---TAAG------------ATCGAAAAGTGCAAATTCAAAAGCGA----------------ATGTCCGAGAAGAGA-----TGTGCGATTGT--GG--------TGTGTGTGTG-------------T---------------GAAAGAATA---GCTGCAACAAATTAA-------ATATAAATAATAGTGC-CAAGTGTTGATTTA-------TGACGAATGATTGT-------------GGCGCAAAATGATTAAATGGCATTTAAGCC----------GTGTSizeHit CountTotal NormTotal
No Reads
droRho1
---------------------------CAACACTGGCTACGCCG-------------CCGACGGCAAGTT-TT-----------CCCTGATAT--TGTTGCGAA---TTG---TTATA-AAA--ATCGATCGCAGATTTTTC-CGTATGTGAATGCGAAAAAGAAAGTGGCACAAA-AT----GTAAAAAACC-AGCGAA-----AACTAGATCGGCA---A-------------------CCG-A-AAAAACACCGAAAATATC-AAATAAAACGTAAA---------AA---AAAG------------ATCAAAAAATGCAAATGCAAAAGCGA----------------ATGCCCGAGAAGTGAGAGGGTGTACGTGTGT--G-----------TGTGTGAG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAA-------ATATAAATAATAGTGC-CAAGTGCCGTTGTA-------TGACAAATAATTGT-------------GGCGCAAAATGATTAAATCGCATTTAAGCC----------GTGCSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------CTCTACCG-------------CCGACGGCAAGTT--T-----------CCCTGATAT-TTGTTGCGAA---TTG---TTAAA-AAA--ATCGATCGCAGATTT-TC-CGTATGCGAATGCGAAAGAGAAAGTGGCACAAA-AT----GTAAAAA-CT-AGTGAA-----AACTAGATCGGCA---A-------------------ACG-CTTAGAACACCGAAAATAAT-GTTTAAAACGTAAA---------AA---A--G------------ATCGAAAAATGCAAATGCAGAAGCGA----------------ATGCCCGAGAAGTGAGAGGGTGTGCGTTCAA-------G------TGTGTGTG-------------T---------------GAAAGAAGA---GCTGCAACGAATTAA-------ATATAAATAATAATGC-CAAGTGCCGTTGAA-------TGACGAATAGTTGT-------------GGCGCAAAATGATTAAATGGCATTTAAGCC----------GTGTSizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------------------------------------------------------------------CTGATAT-TTGTTGCTAA---TTACAATTACA-AGA--ACCGATCGCAGATTTTTCCCGTGTCCGAAATCGAAAGTGAAAGTGGCACAAA-AT----GTAAAAAACCAAG--ATTGCTGCAT--GAGCGATA---AGATA-------------A-TTGTGAAATA----------------------AC-----------AAAAAAA---AGACTACGCGAAATGCCGAAAAACGCA-ATGCAAAA-------------------------------GTGAGAGGGCCTACGTGTGTGT-GTGTGTG--TCTGTGTCTGTGTGGTACTGCA-T---------------GAAAGAAGA---GCTGCAACAAATTA--------GTAAAAATAACAGTGC-CAAGTGCCGTTGGA-------TTGCAAATTGTTTT-------------CGCGCAAAGTGGC-AAATTGCCTTTGAGCC----------GTGTSizeHit CountTotal NormTotal
No Reads
droAna3
------------------GCTGCATGGTCACACTGCGTTAACCGTCTCGACTCACGACTCACGGCAAGTT-TT-----------CCCTGATAT-TTGTTGCAAA---TTG---TTACAGAAA--ATCGATCGCAGATT--TC-GGTGTGAGATTCAAATAGAGAAAGTGACACAAAAAT----GTAAATCGCCGAG--AA-----AAT--GATCGAAATGAATAATGGAATTCGCTAAAAA-TAA--------ACGAAAAGCAAGCATGTAAAACCAAAA------AAAAAAAAAACG------------ATT---C-------------------GAAATGCAAGTGCGA-A-----------------GGTGT-------------------------------GTGGGAGTGCG-T---------------GAAAGAAGAGCTGCTGCAACAAAATTA-------ATATAAATAACAGTGC-CAAGTGCCGTTGCTTTTGCTTTTGCAAATTGTTTT-------------CGCGCTAAATTGTAAA---GCGTTTAGGCCGTAAATTGC-GTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................GTTGCAAA---TTG---TTACAGAAA--ATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
........................................................................................................................................................................................TAAATCGCCGAG--AA-----AAT--GATCGAAATGA....................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...................................................................................................GCAAA---TTG---TTACAGAAA--ATCGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
...................................................................................................................ACAGAAA--ATCGATCGCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAAGAGCTGCTGCAACA..........................................................................................................................2111.001100000
...................................................................................................................................GCAGATT--TC-GGTGTGAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..............................................................................................................................................................................................................................................................................AAAACCAAAA------AAAAAAAAAAC........................................................................................................................................................................................................................................................................................2130.331010000
..............................................................................................................................................................................................................................................................................AAAACCAAAA------AAAAAAAAAA.........................................................................................................................................................................................................................................................................................20200.204040000
droBip1
CA----------------------------------------------------------ACGGCAAGTT-TT-----------CCCCGATAT-TTGTTGCAAA---TTG---TTACAGAAA--ATCGATCGCAGATTTTTC-GGTGTGAGAATTAAATAGAGAAAGTGTCACAAAAAT----GTGAAACGCCGAG--AA-----AATT--ATCGATA---ATAAACGAATTTTTGAAAAA-TAA--------ACGCAAAACAAGCACGTAAAA------------------------------------GCCAAAAAATTC--------------GAAATGCAAGTGCGA-ACGAACG---TGTGG-------------------------------GAGTGCG-------------T---------------GAAAGAAGA---GCTGCAACAAATTAATATATGTATATAAATAACAGTGC-CAAGTGCCGTTGCTT------TTGTAAATTGTTTT-------------CGCGCTAAATTGCAAA---GCGTTTAGGCCGTAAATTGC-GTGTSizeHit CountTotal NormTotal
No Reads
dp5
TAGTATTTTTCCGTA-ACGCTCGACGGTCACAC----------------------------CGGCCAGTTTTT-----------CCCTGATATTTTGTTGCAAA-ATTTT---TTACAAAAAATATCGATCGCAGATTTTTCCCGT--------------GAGAAAGTGGCACAAAAATAAACGGAAAAAACCCAG--AATA--------AAGCGATA---AGAAATG---TCTCCAAAAA-TGT--------ACCCAGAA----------AAAC-----------AAAAAAAA---A------------CCCGTTC-------------------G--ATGCCAGTGTGTAA------TGGAGAGAGACCGATTGCGTGTGTGT-TTGGATG--TGTGTGTGTGTGTGTTAGTGCGGTGGAGGGGATACCGCAGATAGCTGC---GCTGCAACAAATTAA-------A-ATAAATAACAGTAT-CAAGTGCCGTTGCGTT-----CCACG-GGGATTGTGAATGTGTTTTTTCCCGCAAAATGTT------------------------GCGGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................GTTTTT-----------CCCTGATATTTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................GCTCGACGGTCACAC----------------------------CGGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
..............A-ACGCTCGACGGTCACAC----------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
............................................................................................................TT---TTACAAAAAATATCGATCGCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----CCACG-GGGATTGTGAATGT...................................................2111.0010000001000
..............A-ACGCTCGACGGTCACAC----------------------------CGGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCCCGCAAAATGTT------------------------GCG....2111.0010010000000
.....................................................................TTTT-----------CCCTGATATTTTGTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TAGTATTTTTCCGTA-ACGCTCGACGGTCACAC----------------------------CGGCCAGTTTTT-----------CCCTGATATTTTGTTGCAAAAATTTG---TTACAAAAAATATCGATCGCAGATTTTTCCCGT--------------GAGAAAGTGGCACAAAAATAAACGGAAAAAACCCAG--AATA--------AAGCGATA---AGAAATG---TCTCCAAAAA-TGT--------ACCCAGAA----------AAAC-----------AAAAAAAA---A------------CCCGTTC-------------------G--ATGCCAGTGTGTAA------TGGAGAGAGACCGATTGCGTGTGTGT-TTGGATG--TGTGTGTGTG--TGTTAGTGCGGTGGAGGGGATACCGCAGATAGCTGC---GCTGCAACAAATTAA-------A-ATAAATAACAGTAT-CAAGTGCCGTTGCGTT-----CCACG-GGGATTGTGAATGTGTTTTTTCCCGCAAAATGTT------------------------GCGGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................GATTGCGTGTGTGT-TTGGATG--TGT...................................................................................................................................................................................2411.001000001
............................CACAC----------------------------CGGCCAGTTTTT-----------CCCTGATAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
......TTTTCCGTA-ACGCTCGACGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................GATTGCGTGTGTGT-TTGGA..........................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGCGGTGGAGGGGATA....................................................................................................................................................2111.001000001

Generated: 05/19/2015 at 02:30 PM