ID:

dsi_27623

 Coordinate:

3l:13674036-13674315 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-47.4 -47.4 -47.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGTGGCGGGCGAAAGGCCCCAACAGTCATCGAGTATTACAATAAGCAGGGGTAAGTGTTAGTGATTTAGAGAAAAATAAGATTAAATCATTAATAATTATTACATCAGGCTTTTAAATGTAAACGGTTTAAAATCGATTAGTTTGTCAATTGATGTTTCAAATGATCGATTGTCAATTTGGTATAAACAATCGATAGTTAGATTGTCTAGTGTCAAAGTTTGTATTTACAATTATCGGCCAACTAGTTAGTAGTTTTGTTTCAGTCGCAGATTAAAATTGTCATATTTTTTAAAAAAGATCAATTCCTAATTACAATTCTTCAATTGCAGCGTGAATAGCATAGTTGGCAGCAGCAATAACCTGGCCCAAAGCACCAGTA
**************************************************((((.((((((((((((((............)))))))))))))).)))).(((((((.....(((((.(((.(((((...))))).))))))))....)))))))..(((.(((..((((((.((((.((.....((((((........))))))((((((((.....((((....)))).....)))..)))))....((((((((..((.......)).))))))))....((((((....)))))).....)).))))))))))..))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M025
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................................................ATTTGCAATTGTCGGCCAACT........................................................................................................................................ 21 2 1 2.00 2 0 0 0 0 2 0 0 0 0
....................................................................................................................................................................................................................................................................TCAGTCGCAGATTAAAATTG.................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.....................ACGGTCATCGAGTATTACAATAAGCA............................................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................GTATTACAATAAGCAGGGC......................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................CGAGTATTACAATAAGCAGGGC......................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................AATAGCATAGTTGGCAGC............................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTGACTAGTGTCAAGGT................................................................................................................................................................. 18 2 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................TAGCGTAGTTGGGAGTAGCAATA..................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................AGCATAGTTGGCAGCAGC......................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................ATTGCAGCGTGAATAGCATAGTTGG................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................GTCATCGAGTATTACAATAAGCAGGGC......................................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................TGAACTTTCTAATGATCGATT................................................................................................................................................................................................................. 21 3 3 0.67 2 0 0 0 0 0 0 0 2 0
.............................................................................................TAAGTATTACATCAGG............................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0
..............................GAGTATTACAATAGGCAGGAC......................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................TATTACATCAAGCTTTTA......................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................GCGTGTATAGCATAGTGG................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................ACGGTTTAAATTCGA................................................................................................................................................................................................................................................... 15 1 17 0.18 3 0 0 0 0 0 3 0 0 0
.................................................................................................................................................................................................................................................................GTTTCAGTCGTAGAT............................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1
............................................................GTGGTTTAGAGAAAA................................................................................................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GATTGAAAATTTGGTATAA.................................................................................................................................................................................................. 19 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.....................................................................AGAAAAGTAAGATTTAATC.................................................................................................................................................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................................CACCGGCAATACCCTGGCCC............ 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................AAAAAGATCAAGTCC......................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................TCTTATTTTTTAAAAAA................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.GTGGCGAGCGAAAGG............................................................................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
GGTGGCTGGAGAAAGGC........................................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCACCGCCCGCTTTCCGGGGTTGTCAGTAGCTCATAATGTTATTCGTCCCCATTCACAATCACTAAATCTCTTTTTATTCTAATTTAGTAATTATTAATAATGTAGTCCGAAAATTTACATTTGCCAAATTTTAGCTAATCAAACAGTTAACTACAAAGTTTACTAGCTAACAGTTAAACCATATTTGTTAGCTATCAATCTAACAGATCACAGTTTCAAACATAAATGTTAATAGCCGGTTGATCAATCATCAAAACAAAGTCAGCGTCTAATTTTAACAGTATAAAAAATTTTTTCTAGTTAAGGATTAATGTTAAGAAGTTAACGTCGCACTTATCGTATCAACCGTCGTCGTTATTGGACCGGGTTTCGTGGTCAT
**************************************************((((.((((((((((((((............)))))))))))))).)))).(((((((.....(((((.(((.(((((...))))).))))))))....)))))))..(((.(((..((((((.((((.((.....((((((........))))))((((((((.....((((....)))).....)))..)))))....((((((((..((.......)).))))))))....((((((....)))))).....)).))))))))))..))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 M023
head
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................................................CATTCACAATCACTAAAT........................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TAGCCGCTTGATAAATCATC............................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AAAAAAATTTTTTCTAGTGAA........................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AAAAATTTTTTCTAGTGAT........................................................................... 19 2 16 0.38 6 6 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TAGGCAGCTGATCAATCAT................................................................................................................................ 19 3 7 0.29 2 0 0 0 1 0 0 1 0 0
....................................................................................................................................................................................................................AGTTTCAGACATAAAT........................................................................................................................................................ 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................GTTTACAAGCTAGCCGTTAAA......................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................TCAAGCAGTGAACTACGAAG............................................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................CCGATAACAGTTTCAAACAAA........................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................AAAATTTTTTCTAGTGAT........................................................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTTTCTAGTTCAGGA........................................................................ 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0
..............................................................................................................AAAATTTAAAGTTGCCAAAT.......................................................................................................................................................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AAATTTTGTCTAGTTA............................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................AAAAAAAAGTCAGCGCC.............................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................AAATATTGTATCTAGTTAAG.......................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GACAGGTTCAAACATGAAT........................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:13673986-13674365 + dsi_27623 GGTGGC------GGGCGAAA---GGCCCCAACAGTCATCGAGTATTACAATAAGCAGGGGTAAGTGT----------------------TAGTGAT---------------TTAGA-----GAAAAAT--------AAGATTAA---------------------------------------------------------------------------------------------------ATCATTAATAATTATTAC------------AT--------------------------------------------------------------------------------------------------CAGGC-TTTTAAATGTAA-----ACGGTTTA------------------AAATCGATTAGTTTGTCAATT-----GATGT-T---------TCA-AA-TGATCGATTGTCAATTTGGTATA--AACAA-TCGAT---------------------------------------------AGTTAGA----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCAAAG---TTTGTATTTACAATTATCGGCCA--ACTAGTTAGTAGTTTT----------GTTTCAGTCGCAG------------------------------------------------------------------A-TTAAAATT-----G-------------TCATATTTTTTAAAAAAGATC-------AATTCCTAATT----A-CAATTCTTCAAT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGCAG---CAGCAATAACCTGGCCCAAAGCACCAGTA------------------------------------
droSec2 scaffold_0:6149260-6149662 + GGTGGC------GGGCGAAA---GGCCCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT----------------------TAGTGAT---------------TTAGA-----GAAAAAT--------AAAATTAA---------------------------------------------------------------------------------------------------ATCATTAATAATTATTAC------------AT--------------------------------------------------------------------------------------------------CAGGC-TTTTAAATGTAA-----ACAGTTTT------------------AAATCGATTAGTTTGTCAAGTGAGCCGATGT-T---------TTA-AA-TGATCGATTGTCAATTTGGTATA--AAACA-TCGAT---------------------------------------------AGTTAGA----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCAAAG---TTTGTATTTACAACTATCGGCCA--ACTAGTTAGTAGTTTT----------ATTTCAGT---A---AAAATAGCCTCGTCAATGG------------------------------------------CGGATTTTAAATT-----G-------------TCATATTT-TCAAAAAAGATC-------AATTCCTAATT----C-CAATTCTTTAAT----------------------------------------------------TGCAGCGTGAATAACATAGTTGGCAG---CAGCAATAACCTGGCCCAAAGCACCAGTA------------------------------------
dm3 chr3L:14002768-14003180 + GGTGGC------GGGCGAAA---GGCGCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT----------------------TAATGAT---------------TTACA-----GAAAAAT--------AAGATTAA---------------------------------------------------------------------------------------------------ATCATTAATCATCATTAA------------AT--------------------------------------------------------------------------------------------------GAGGC-TTTTAAATGTAA-----ACGGTTTTA-----------------GAATCGAGTAGTTAGTCAAATGTATCGATGT-T---------TCA-AA-TA----ATTGTCAATTTGGTGCA--AGGCA-TCGAT---------------------------------------------AGTTAGC----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCAAAG---TTTGTATTTACAACTATCGGCCA--ATTAGTTAGTAGTTTT----------ATTGCAGTCGCAGTACAAATAGTCTCGTCAATGG------------------------------------------CGGATTTCAAATT-----G-------------TCATATTT-TCAAAAAAGATCAAATAGAAATTCCTAATT----A-TAATTCTTCAAT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGCAG---CAGCAATAACCTGGCCCAAAGCAACAGTA------------------------------------
droEre2 scaffold_4784:13994769-13995167 + GGTGGC------GGGCGAAA---GGCCCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT-----------------------AATGAT---------------TTAGG-----GATAAAT--------AAAATTAA---------------------------------------------------------------------------------------------------ATAATT----------GCAATAAA------A-------------------------AGGGGCAAAA----------------------------------------------------------------GGGAC-TTTTAAATGTAA-----ACGATTTA------------------GAATCGATTTATTAGTCAAATG-----------------------------ATCGATTCTCAATTT---------AACA-TCGAT---------------------------------------------AGTTATC----------------------------------------------------------------------------------------------------------------------------------------T---TCTAATGTCAAAG---TTTCTATTTACAACTATCGGCCA--ACTAGTCAGTAGTTTT----------ATTGCAGTCGCAGTAAAAGTAGCCTCGTCTATGG------------------------------------------CGGAGTTCAAATTGTGTTG-------------TGATATTT-TCAAAAGAGATCAAACAGCAATTCCTAATT----A-CAATTCCCTAAT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGTAG---CAGCAATAACCTGAGCCAAAGCACCAGTA------------------------------------
droYak3 3L:14090522-14090959 + GGTGGC------GGGCGAAA---GGCCCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT---------CGACATGGA---ATAATGAT---------------TTAGA-----GATAAAT--------GAGATTTA---------------------------------------------------------------------------------------------------ATAATT----------GCAATAAATGTAAAG---------------------------------------------------------------------------------------------------TAGGC-TTTAAAATGCAAACGAAACGATTTA------------------GAATCGATTTGTTAGTCAAAAGTGCCGATGT-T---------TCG-CA-TGATCGATTGTCAATTTAGTACA--AAGCA-TCGAT---------------------------------------------AGTTATC----------------------------------------------------------------------------------------------------------------------------------------TTCTGCTAATGTCAAAG---TTTGTATTTACAACTATCGGCCA--GCTAGTCAGTAGTTTT----------ATTGCATTCGCAGTAAAAGTAGCCTCGTCAATGG------------------------------------------CGGAGTTCAAATTGTGTTG-------------TGATATTT-TCAAAAGGAATCTAACAGCAATTTCTAATT----A-TAATTTCCCAAC----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGCAG---CGGCAATAACCTGGCCCAAAGCACCAGTA------------------------------------
droEug1 scf7180000409456:188368-188867 + GGTGGC------GGTCGCAA---GGCTCCAACGGTCATAGAGTATTACAACAAACACGGGTAAGAGT---------TAACA----------GTGAT---------------TAAGGATATCGCTAAGT--------ATAAATATTCAAACGAATTT--TAAAGAG---------------------------T-------------------------------------------------------------------CACTAGT------T-------------------------AGGGGCATACGTTTTTGATTAGAAATCAAATTTAGTCAAAGATTAAATTCCAATAAAACCTTTCCAAACATTCTTTAGC-TTTTAAGGGTAA-----ACCATTTC------------------GAATCGATTTGTCTGTCAAATATCTTGATGT-T---------TCG-AATTTACCGATTGTCAATTTTGGTTA--AATAA-TCGAT---------------------------------------------AGTTACT----------------------------------------------------------------------------------------------------------------------------------------TGTTTTTATTGTCAAAA---CCAGTATTTACAACTATCGAATA--GTTGGTCAGTTCAAAT----------ATTGCAATAGAA---GAATTAGTCTCGTCAATGG------------------------------------------CGAAGCATAAGCTGTATTC-------------TGGAGTTT-TTAAAAG----------CCACTCCCTAATA----A-AGAACCCTTCAT----------------------------------------------------TGCAGAGTGAATAGCATAATCGGCAG---CGGCAATAGCCTGACTCAAAGTACCAGTA------------------------------------
droBia1 scf7180000302428:5910371-5910668 - C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGC-TTTTAAGTGG-A-----ACCGTTCC------------------TAATCGATTTGTCAGTCTAATGTCTTCAGAGTC---------TGG-GA-CGATCGATTGTCAATATTCCACC--AAGCATTCGAT---------------------------------------------ATCTA--------------------------------------------------------------------------------------------------------------------------------------------TTACTTCTGTCAAACAT-TTCGTATTTACAACTATCGGCCA--GCTAGTCACTT---CT----------ATTGCAGTAGGA---GAAAAAGCCTCGTCAATGG------------------------------------------CGAAGCATAAATTGTGTTG-------------TGATATTT-TCAAGACC---------------GCTTATCAA-GA-CAATTCCCTTAT----------------------------------------------------TCCAGCGTGAACAACGTAATCGGCAG---CAGCAATAGCCTGTCCCAAAGCGCCAGCA------------------------------------
droTak1 scf7180000415667:114751-115069 - G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TTTTAAATGTA------ACCGTTTA------------------GAATCGATTTGTCCGTCAACTGTCTCGATGT-TGTATCGAGATGT-GA-TGATCGATTGTACATTTTCTTCG--AAGCA-TCGAT---------------------------------------------AGTTAAC----------------------------------------------------------------------------------------------------------------------------------------TTTTACTACTGTCAAAA---TTCATATTTACAACTATCGGCCA--GTTGGTCAATT---CT----------ACTGCAGTAGGA---GATTTAGCCTCGTCAATGG------------------------------------------CGAAGCACAAATTGTGTTG-------------TGATACTT-TTAAGAAATCTCGAACGGCAGTTCCTAACCAC-AG-CTATTCCTTGAT----------------------------------------------------TGCAGCGTGAACAGCATAATCGGCAG---CAGCAATAGCCTGACCCAAAGCACCAGCA------------------------------------
droEle1 scf7180000491255:2458075-2458396 + TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGC------------AT------------------------------------------------------------------------------------------------TTTGAGC-TTTCAAATGTAA-----ACAATTTA------------------GAATCGATTTGTCTGTCAAATGTGTCGATAC-T---------TAG-GA-TGATCGATTGCCAATTTTTTACA-AAAGCA-TCGAT---------------------------------------------AGTTGGC----------------------------------------------------------------------------------------------------------------------------------------TTTCTCTAGTGTCAAAA---TTCGTATTTACACCTATCGGCTA--ACTGCTCAGTTGTC-------------TTGCAGTAGGA---GAATTAGTCTCGCCAATGG------------------------------------------CAAAACGCA---------G-------------TGACATTT-TCAAGAAAGTCCGAATCGCAGTCACTAATTAATAATCAATCCGTGAAT----------------------------------------------------TGCAGCGTCAACAGCATCGTCGGCAG---CAGCAGCAGCCTCACCCAAAGTAACAGCA------------------------------------
droRho1 scf7180000760202:89678-90202 - AGTGGC------GGGCGGAA---GGCCCCTACGGTCATCGAGTATTACAACAAGCACGGGTAAGCACTCCTTCGCATGGCAATGTAATTAAATATC---------------TAACT-----AATAACATCTTTTGAT---------ATACGTACTTTTAAA--CGCTAAGATTATTT---TAAAAATAATAGTCGCTGTAAAGCCTTTTCTATTTAACTGACATAAATGACTTTCGAGTTTAAATATTT----------GCATTGA----C--AT-------------------------------------------------------------------------------------------------CTAAGC-TTTTAAATGTTA-----ACCGTTTA------------------GAATCGATTTGTCTGTCAAATGTATCGATGT-T---------TAGGGA-TGAAAAATTGACAATGTTTCACA-AAAGCA-TCGAT---------------------------------------------AATTTGC----------------------------------------------------------------------------------------------------------------------------------------TTTCACTAGTGTCAAAA---TTCGTATTTACGTCTGTCGGCCA--GCTGCTCAGTTGT-------------ATTGCATTAGAA---GAATTAGCTTCGTCAATGG------------------------------------------CAAAGCATAAAAT-----G-------------TGACATTT-CCAAGAAAGCTCGAACCGCTCAATCTAATA----A-CAATCCCTGAAT----------------------------------------------------TGCAGCGTGAACAGCATCATCGGAAG---CAGCAATAGCCTGGCCCAAAGCCACAGCA------------------------------------
droFic1 scf7180000453784:323292-323782 + GCCGGT------GGACGAAA---GGCACCCACGGTCATTGAGTATTACAACAAGCATGGGTAAGTAA---------TGGCAGGGAAACTCAATCTT---------------TTATC-----AGTAAAA--------A---------AAGGGAACTTTTTAAAGTGC----ATTATTTGGTTAA-------AGT---TG-GAAACCTTTAGTATTTATTTGGCACAACTGACATTTAAGTTGA------------------------------------------------------------------------------------------------------------------------------------AAGCTTTTTAAATGTAA-----AGCGTTTA------------------GAATCGATTTGTCTGTCAAATGTTTCGATTT-T---------CGT-GA-TGTTCGATAATCAATATTTCTCGAAAAGCA-TCGGT---------------------------------------------AGTTGGT----------------------------------------------------------------------------------------------------------------------------------------C-TCACTATTGTCAAAA---T-CGTATTTACGACATTCGGGCAGAGCTGGTCAGTTCG-------------GTTGTAGTATTA---GAACTAGCCTCGTCAATGG------------------------------------------GGAAGCACAAACTGTTTTG-------------TGATATTT-TCAAGAAAGCTCGATTGGCAGTGTCTAATAAA-AA-CAATCCCTGAAT----------------------------------------------------TGCAGCGTGAACAGCATCATCGGCAGCAGCAGCAGTAGCCTAACCCAAAGCAACAGCA------------------------------------
droKik1 scf7180000302441:2820739-2820980 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA------------------AAATCGATTTGTTTGTTAAATGACGGCTCGT-T---------CCG-GA-TGAAC-----------------------AA-GCGAT---------------------------------------------AGTTTTC----------------------------------------------------------------------------------------------------------------------------------------TCCCACAAGTGTCAGAA---TT-GCAT---CAACTATCGGGCT--G--GGCCAGCTGTTTTGATCAGTTCTAT------GTGA---GAAT---------------------------------------------------------------------TGTGT---------------------GT------------------------TGTGA--------CATCTCTCCTGTATTCACACGTGCTGCGTATCTTAACTTTTCAGCG---TGAACCAA----------------CACAGCAGCAGCAGCAA---CAGCAGTAACCTGACCCATAGCAATAGCA------------------------------------
droAna3 scaffold_13337:11940481-11940557 - TGGAAG-------AGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTTCCTAATC----C-AAATCC-------------------------------------------------ATC-TCTATTTTAGTG---------------TCAA---CAGCAGCAACTTGACCCACAGCAGCAGCC------------------------------------
droBip1 scf7180000396589:2045338-2045799 + AGCGTG------GCCAGGAA---GGTGCCGACGGTCATCGAGTATTACAATAAGCATGGGTAACTAA---------AG-----AT---TTGTATTATTTTAATTAAAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTGGGAAGGATTAGTAGGC------------TTAT--------------------------------------------------------------------------------GAGT-------------------------------------------------------------------------------------------TATT--------------------------------------------GGGGGAATTTTGACAGATTCCT--GGATTAAAGTAGACCCGATTTATGACCCGAAAGATGGAAAATATAGGAAGGAG----GTCAAGTTGGAATGAAAACAAATGGCTCGGAACGGGCGCACTCATCCGTTGGTGACAATCAAGTTCAATTATTTTCT---TCGATTGTTGGAT--GTTTAGATTC---------------------------------------------------------------------------CGGATCGATTAATATTTTGGCTGTCAAGCACCTGTTTCTGTTGCCAGTTTCATATT-----GTCAGTTGGAGAACTT-AGCTCTCTAGAAAGGAAC---------------ATCAA-AG-CGGAATCTCTAA----------------------------------TCCAACTCTATTTTCAATTCCAGTGC---------------CAA---CAGCAGCAACCTGACCCACAGCAGCAGCC------------------------------------
dp5 2:14501604-14501693 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATGG-----GCCGTATT------------------AAATAGAATATTTTGTGAATTGATCT------C---------CTG-TA-TAACTGTCTG----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATT----T-TAATTTTAACAT----------------------------------------------------TCTAGTGTT-------------------------------------------------------------------------------------
droPer2 scaffold_0:5919748-5919831 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATGG-----GCCGTATT------------------AAATAGAATATTTTGTGAATTGATCT------C---------CTG-TA-TAACTGTCTG----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATT----T-------AAATAT----------------------------------------------------TCTAGTGTT-------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:6270702-6271104 - GCTGCA---AATGCACGGAAAATGTCGTCCACAGTTATTGAATATTACAGCAAGCACGGGTGAGTCT---------A------CT---TTACTTTTCTTTCATTCAAAGTC--------------------------------G---------------------------------------------------------------------------------------------------TCAAGT-------------------GTGACACAAGTCTCAGAAACGATGAATATAC------------TTTT--------------------------------------------------------------------------------GACGTCTCA------------------GAGACGACT----------------------------CACGAGAC-GT-TAATTGAAAAAAAATTTCTATCG--AAATA-TCGAAGCATGATACAAATTTTTTGACAAGAGGAGTCTAGTCACTTGTGC--TTTTTGTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------T----------------ATAGTTTTTGTCGA--GTTAGATG------------------------------------TCAACCTTATTAGTTG------------------------------------------TAACCTGTA---------A-------------TAAG----------------------------TTTATTC----A-AATGTTTCTATT----------------------------------------------------TCTAGCATGAACAATATAAGC------------AGTAACTTGAATAATAATAGCAGTAATAACGTTTCGGCTTCGCCACTTGGTAATAATAATC
droVir3 scaffold_13047:6128215-6128268 + GTAAGT------GGAA-------------------------------------------------------------------------TAATAGT---------------TTAAA-----GAAATGT--------ATGATTAA---------------------------------------------------------------------------------------------------ATGTATAATTATTATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:26929777-26929834 + TTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGATA-------AACTTTTATTT----A-CAATTTTTTATT----------------------------------------------------TTAGATACGAGTATTTTAGCT-------------------------------------------------------------------------
droGri2 scaffold_15110:18372149-18372578 + GCATCAGCCATCATCCGCAAGCCGCCCCCCAATGTGGTCGAGTATTACA---AACACAGGTGAGAAA---------TA-----AA---TTATTCTC---------------TTACT-----ACTTAAT--------AAGATTAA---------------------------------------------------------------------------------------------------TCAAATAAT----------------ATAAAA---------------------------------------------------------------------------------------------------TAAAC-ATTCTAATAACA--------GCCATAGTGTTGGATACTATTCGAAATC---------------------------A---------TCG-AA-TGATATATTGACATTCTGTTGTC--------------------------------------------AAGGCACTTTCGATATTTTTGTTTTTCTTAGTTTAGATCTAGTTTGTCGTTTGACAGTTGATTGAATTAAACAGAATTTGGACAAAATTTGCCTGACAAT---------GCAGGACTCATACCCATCTATTACTAAT-----------------------------------------------------------------------------G-------------TTGACAGAATCA---AATTTAGCTCTCTTTATGG------------------------------------------AGATCCGTTTACTTCTTCA-------------CA------------------------------ACTAACAAA-AA-CCAT----------------------------------------------------------------TTGTGTTTCTCGTTTTCCTCTG---CGACCACAGCCTGAGCAATAGCACCAG--------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGTGGC------GGGCGAAA---GGCCCCAACAGTCATCGAGTATTACAATAAGCAGGGGTAAGTGT----------------------TAGTGAT---------------TTAGA-----GAAAAAT--------AAGATTAA---------------------------------------------------------------------------------------------------ATCATTAATAATTATTAC------------AT--------------------------------------------------------------------------------------------------CAGGC-TTTTAAATGTAA-----ACGGTTTA------------------AAATCGATTAGTTTGTCAATT-----GATGT-T---------TCA-AA-TGATCGATTGTCAATTTGGTATA--AACAA-TCGAT---------------------------------------------AGTTAGA----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCAAAG---TTTGTATTTACAATTATCGGCCA--ACTAGTTAGTAGTTTT----------GTTTCAGTCGCAG------------------------------------------------------------------A-TTAAAATT-----G-------------TCATATTTTTTAAAAAAGATC-------AATTCCTAATT----A-CAATTCTTCAAT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGCAG---CAGCAATAACCTGGCCCAAAGCACCAGTA------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGCAG------------------------------------------------------------------A-TTAAAATT-----G-------------...........................................................................................................................................................................................................2012.00200200000000000000
.........................................GTATTACAATAAGCAGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
......................................CGAGTATTACAATAAGCAGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCATAGTTGGCAG---C................................................................1811.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATAGTTGGCAG---CAGC.............................................................1811.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGG.......................................................................2511.00100010000000000000
.................................GTCATCGAGTATTACAATAAGCAGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
droSec2
GGTGGC------GGGCGAAA---GGCCCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT----------------------TAGTGAT---------------TTAGA-----GAAAAAT--------AAAATTAA---------------------------------------------------------------------------------------------------ATCATTAATAATTATTAC------------AT--------------------------------------------------------------------------------------------------CAGGC-TTTTAAATGTAA-----ACAGTTTT------------------AAATCGATTAGTTTGTCAAGTGAGCCGATGT-T---------TTA-AA-TGATCGATTGTCAATTTGGTATA--AAACA-TCGAT---------------------------------------------AGTTAGA----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCAAAG---TTTGTATTTACAACTATCGGCCA--ACTAGTTAGTAGTTTT----------ATTTCAGT---A---AAAATAGCCTCGTCAATGG------------------------------------------CGGATTTTAAATT-----G-------------TCATATTT-TCAAAAAAGATC-------AATTCCTAATT----C-CAATTCTTTAAT----------------------------------------------------TGCAGCGTGAATAACATAGTTGGCAG---CAGCAATAACCTGGCCCAAAGCACCAGTA------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACCTGGCCCAAAGCACCAGT.....................................2411.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGA----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCA................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
GGTGGC------GGGCGAAA---GGCGCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT----------------------TAATGAT---------------TTACA-----GAAAAAT--------AAGATTAA---------------------------------------------------------------------------------------------------ATCATTAATCATCATTAA------------AT--------------------------------------------------------------------------------------------------GAGGC-TTTTAAATGTAA-----ACGGTTTTA-----------------GAATCGAGTAGTTAGTCAAATGTATCGATGT-T---------TCA-AA-TA----ATTGTCAATTTGGTGCA--AGGCA-TCGAT---------------------------------------------AGTTAGC----------------------------------------------------------------------------------------------------------------------------------------TT-GTCTAGTGTCAAAG---TTTGTATTTACAACTATCGGCCA--ATTAGTTAGTAGTTTT----------ATTGCAGTCGCAGTACAAATAGTCTCGTCAATGG------------------------------------------CGGATTTCAAATT-----G-------------TCATATTT-TCAAAAAAGATCAAATAGAAATTCCTAATT----A-TAATTCTTCAAT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGCAG---CAGCAATAACCTGGCCCAAAGCAACAGTA------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...GGC------GGGCGAAA---GGCGCCAACGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AAA---GGCGCCAACGGTCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................ACGGTCATCGAGTATTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAGCATAGTTGGCAG---CA...............................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAATAGCATAGTTGGCAG---CAGCA............................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAATAGCATAGTTGG.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................GCCAACGGTCATCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATAGTTGGCAG---CAGCAAT..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGCAGTACAAATAGTC...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATAGTTGGCAG---CAGC.............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....C------GGGCGAAA---GGCGCCAACGGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ATCGAGTATTACAATAAGCACGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATAGCATAGTTGGCAG---CAGCAA...........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTGGCAG---CAGCAATAACCTGGCATC...............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GC------GGGCGAAA---GGCGCCAACGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAATAGAAATTCCTAATT----A-..............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCTGGCCCAAAGCAACA.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAATT----A-TAATTCTTCAAT----------------------------------------------------TGCA..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCTCGTCAATGG------------------------------------------CGGA.......................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................GCGCCAACGGTCATCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAAG---TTTGTATTTACAACTATCG.......................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAATAGCATAGTTGGCA.....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGTGGC------GGGCGAAA---GGCGCCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAGTCTCGTCAATG......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCA-TCGAT---------------------------------------------AGTTAGC----------------------------------------------------------------------------------------------------------------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCATAGTTGGCAG---CAGCAATAACC......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAATGG------------------------------------------CGGATTTCAAATT-----G-------------TCA........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTATCGGCCA--ATTAGTTAGTAG.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCATAGTTGGCAG---CAGCAATAACC......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGCCCAAAGCAACAGT.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............................CAACGGTCATCGAGTATTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----A-TAATTCTTCAAT----------------------------------------------------TGCAG.........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAACCTGGCCCAAAGCAACAGTA------------------------------------2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAACGGTCATCGAGTATTACAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTATTACAATAAGCACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAAA---GGCGCCAACGGTCATCGAGTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TAATTCTTCAAT----------------------------------------------------TGCAG.........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGATCAAATAGAAACG...........................................................................................................................................................................19120.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATCGATGT-T---------TCA-TG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
droEre2
GGTGGC------GGGCGAAA---GGCCCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT-----------------------AATGAT---------------TTAGG-----GATAAAT--------AAAATTAA---------------------------------------------------------------------------------------------------ATAATT----------GCAATAAA------A-------------------------AGGGGCAAAA----------------------------------------------------------------GGGAC-TTTTAAATGTAA-----ACGATTTA------------------GAATCGATTTATTAGTCAAATG-----------------------------ATCGATTCTCAATTT---------AACA-TCGAT---------------------------------------------AGTTATC----------------------------------------------------------------------------------------------------------------------------------------T---TCTAATGTCAAAG---TTTCTATTTACAACTATCGGCCA--ACTAGTCAGTAGTTTT----------ATTGCAGTCGCAGTAAAAGTAGCCTCGTCTATGG------------------------------------------CGGAGTTCAAATTGTGTTG-------------TGATATTT-TCAAAAGAGATCAAACAGCAATTCCTAATT----A-CAATTCCCTAAT----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGTAG---CAGCAATAACCTGAGCCAAAGCACCAGTA------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATAACCTGAGCCAAAGCACC........................................2411.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCCAAAGCACCAGT.....................................1811.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAG---CAGCAATAACCTGAGC.................................................2111.0010000100
droYak3
GGTGGC------GGGCGAAA---GGCCCCAACGGTCATCGAGTATTACAATAAGCACGGGTAAGTGT---------CGACATGGA---ATAATGAT---------------TTAGA-----GATAAAT--------GAGATTTA---------------------------------------------------------------------------------------------------ATAATT----------GCAATAAATGTAAAG---------------------------------------------------------------------------------------------------TAGGC-TTTAAAATGCAAACGAAACGATTTA------------------GAATCGATTTGTTAGTCAAAAGTGCCGATGT-T---------TCG-CA-TGATCGATTGTCAATTTAGTACA--AAGCA-TCGAT---------------------------------------------AGTTATC----------------------------------------------------------------------------------------------------------------------------------------TTCTGCTAATGTCAAAG---TTTGTATTTACAACTATCGGCCA--GCTAGTCAGTAGTTTT----------ATTGCATTCGCAGTAAAAGTAGCCTCGTCAATGG------------------------------------------CGGAGTTCAAATTGTGTTG-------------TGATATTT-TCAAAAGGAATCTAACAGCAATTTCTAATT----A-TAATTTCCCAAC----------------------------------------------------TGCAGCGTGAATAGCATAGTTGGCAG---CGGCAATAACCTGGCCCAAAGCACCAGTA------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................AA---GGCCCCAACGGTCATCGAGTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATAGCATAGTTGGCAG---C................................................................2111.00100001000000
................GAAA---GGCCCCAACGGTCATCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATTGTGTTG-------------TGAT.......................................................................................................................................................................................................1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA--AAGCA-TCGAT---------------------------------------------AGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
droEug1
GGTGGC------GGTCGCAA---GGCTCCAACGGTCATAGAGTATTACAACAAACACGGGTAAGAGT---------TAACA----------GTGAT---------------TAAGGATATCGCTAAGT--------ATAAATATTCAAACGAATTT--TAAAGAG---------------------------T-------------------------------------------------------------------CACTAGT------T-------------------------AGGGGCATACGTTTTTGATTAGAAATCAAATTTAGTCAAAGATTAAATTCCAATAAAACCTTTCCAAACATTCTTTAGC-TTTTAAGGGTAA-----ACCATTTC------------------GAATCGATTTGTCTGTCAAATATCTTGATGT-T---------TCG-AATTTACCGATTGTCAATTTTGGTTA--AATAA-TCGAT---------------------------------------------AGTTACT----------------------------------------------------------------------------------------------------------------------------------------TGTTTTTATTGTCAAAA---CCAGTATTTACAACTATCGAATA--GTTGGTCAGTTCAAAT----------ATTGCAATAGAA---GAATTAGTCTCGTCAATGG------------------------------------------CGAAGCATAAGCTGTATTC-------------TGGAGTTT-TTAAAAG----------CCACTCCCTAATA----A-AGAACCCTTCAT----------------------------------------------------TGCAGAGTGAATAGCATAATCGGCAG---CGGCAATAGCCTGACTCAAAGTACCAGTA------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGC-TTTTAAGTGG-A-----ACCGTTCC------------------TAATCGATTTGTCAGTCTAATGTCTTCAGAGTC---------TGG-GA-CGATCGATTGTCAATATTCCACC--AAGCATTCGAT---------------------------------------------ATCTA--------------------------------------------------------------------------------------------------------------------------------------------TTACTTCTGTCAAACAT-TTCGTATTTACAACTATCGGCCA--GCTAGTCACTT---CT----------ATTGCAGTAGGA---GAAAAAGCCTCGTCAATGG------------------------------------------CGAAGCATAAATTGTGTTG-------------TGATATTT-TCAAGACC---------------GCTTATCAA-GA-CAATTCCCTTAT----------------------------------------------------TCCAGCGTGAACAACGTAATCGGCAG---CAGCAATAGCCTGTCCCAAAGCGCCAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TTTTAAATGTA------ACCGTTTA------------------GAATCGATTTGTCCGTCAACTGTCTCGATGT-TGTATCGAGATGT-GA-TGATCGATTGTACATTTTCTTCG--AAGCA-TCGAT---------------------------------------------AGTTAAC----------------------------------------------------------------------------------------------------------------------------------------TTTTACTACTGTCAAAA---TTCATATTTACAACTATCGGCCA--GTTGGTCAATT---CT----------ACTGCAGTAGGA---GATTTAGCCTCGTCAATGG------------------------------------------CGAAGCACAAATTGTGTTG-------------TGATACTT-TTAAGAAATCTCGAACGGCAGTTCCTAACCAC-AG-CTATTCCTTGAT----------------------------------------------------TGCAGCGTGAACAGCATAATCGGCAG---CAGCAATAGCCTGACCCAAAGCACCAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGC------------AT------------------------------------------------------------------------------------------------TTTGAGC-TTTCAAATGTAA-----ACAATTTA------------------GAATCGATTTGTCTGTCAAATGTGTCGATAC-T---------TAG-GA-TGATCGATTGCCAATTTTTTACA-AAAGCA-TCGAT---------------------------------------------AGTTGGC----------------------------------------------------------------------------------------------------------------------------------------TTTCTCTAGTGTCAAAA---TTCGTATTTACACCTATCGGCTA--ACTGCTCAGTTGTC-------------TTGCAGTAGGA---GAATTAGTCTCGCCAATGG------------------------------------------CAAAACGCA---------G-------------TGACATTT-TCAAGAAAGTCCGAATCGCAGTCACTAATTAATAATCAATCCGTGAAT----------------------------------------------------TGCAGCGTCAACAGCATCGTCGGCAG---CAGCAGCAGCCTCACCCAAAGTAACAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGTGGC------GGGCGGAA---GGCCCCTACGGTCATCGAGTATTACAACAAGCACGGGTAAGCACTCCTTCGCATGGCAATGTAATTAAATATC---------------TAACT-----AATAACATCTTTTGAT---------ATACGTACTTTTAAA--CGCTAAGATTATTT---TAAAAATAATAGTCGCTGTAAAGCCTTTTCTATTTAACTGACATAAATGACTTTCGAGTTTAAATATTT----------GCATTGA----C--AT-------------------------------------------------------------------------------------------------CTAAGC-TTTTAAATGTTA-----ACCGTTTA------------------GAATCGATTTGTCTGTCAAATGTATCGATGT-T---------TAGGGA-TGAAAAATTGACAATGTTTCACA-AAAGCA-TCGAT---------------------------------------------AATTTGC----------------------------------------------------------------------------------------------------------------------------------------TTTCACTAGTGTCAAAA---TTCGTATTTACGTCTGTCGGCCA--GCTGCTCAGTTGT-------------ATTGCATTAGAA---GAATTAGCTTCGTCAATGG------------------------------------------CAAAGCATAAAAT-----G-------------TGACATTT-CCAAGAAAGCTCGAACCGCTCAATCTAATA----A-CAATCCCTGAAT----------------------------------------------------TGCAGCGTGAACAGCATCATCGGAAG---CAGCAATAGCCTGGCCCAAAGCCACAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCCGGT------GGACGAAA---GGCACCCACGGTCATTGAGTATTACAACAAGCATGGGTAAGTAA---------TGGCAGGGAAACTCAATCTT---------------TTATC-----AGTAAAA--------A---------AAGGGAACTTTTTAAAGTGC----ATTATTTGGTTAA-------AGT---TG-GAAACCTTTAGTATTTATTTGGCACAACTGACATTTAAGTTGA------------------------------------------------------------------------------------------------------------------------------------AAGCTTTTTAAATGTAA-----AGCGTTTA------------------GAATCGATTTGTCTGTCAAATGTTTCGATTT-T---------CGT-GA-TGTTCGATAATCAATATTTCTCGAAAAGCA-TCGGT---------------------------------------------AGTTGGT----------------------------------------------------------------------------------------------------------------------------------------C-TCACTATTGTCAAAA---T-CGTATTTACGACATTCGGGCAGAGCTGGTCAGTTCG-------------GTTGTAGTATTA---GAACTAGCCTCGTCAATGG------------------------------------------GGAAGCACAAACTGTTTTG-------------TGATATTT-TCAAGAAAGCTCGATTGGCAGTGTCTAATAAA-AA-CAATCCCTGAAT----------------------------------------------------TGCAGCGTGAACAGCATCATCGGCAGCAGCAGCAGTAGCCTAACCCAAAGCAACAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA------------------AAATCGATTTGTTTGTTAAATGACGGCTCGT-T---------CCG-GA-TGAAC-----------------------AA-GCGAT---------------------------------------------AGTTTTC----------------------------------------------------------------------------------------------------------------------------------------TCCCACAAGTGTCAGAA---TT-GCAT---CAACTATCGGGCT--G--GGCCAGCTGTTTTGATCAGTTCTAT------GTGA---GAAT---------------------------------------------------------------------TGTGT---------------------GT------------------------TGTGA--------CATCTCTCCTGTATTCACACGTGCTGCGTATCTTAACTTTTCAGCG---TGAACCAA----------------CACAGCAGCAGCAGCAA---CAGCAGTAACCTGACCCATAGCAATAGCA------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGGAAG-------AGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTTCCTAATC----C-AAATCC-------------------------------------------------ATC-TCTATTTTAGTG---------------TCAA---CAGCAGCAACTTGACCCACAGCAGCAGCC------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGCGTG------GCCAGGAA---GGTGCCGACGGTCATCGAGTATTACAATAAGCATGGGTAACTAA---------AG-----AT---TTGTATTATTTTAATTAAAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTTGGGAAGGATTAGTAGGC------------TTAT--------------------------------------------------------------------------------GAGT-------------------------------------------------------------------------------------------TATT--------------------------------------------GGGGGAATTTTGACAGATTCCT--GGATTAAAGTAGACCCGATTTATGACCCGAAAGATGGAAAATATAGGAAGGAG----GTCAAGTTGGAATGAAAACAAATGGCTCGGAACGGGCGCACTCATCCGTTGGTGACAATCAAGTTCAATTATTTTCT---TCGATTGTTGGAT--GTTTAGATTC---------------------------------------------------------------------------CGGATCGATTAATATTTTGGCTGTCAAGCACCTGTTTCTGTTGCCAGTTTCATATT-----GTCAGTTGGAGAACTT-AGCTCTCTAGAAAGGAAC---------------ATCAA-AG-CGGAATCTCTAA----------------------------------TCCAACTCTATTTTCAATTCCAGTGC---------------CAA---CAGCAGCAACCTGACCCACAGCAGCAGCC------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATGG-----GCCGTATT------------------AAATAGAATATTTTGTGAATTGATCT------C---------CTG-TA-TAACTGTCTG----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATT----T-TAATTTTAACAT----------------------------------------------------TCTAGTGTT-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATGG-----GCCGTATT------------------AAATAGAATATTTTGTGAATTGATCT------C---------CTG-TA-TAACTGTCTG----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATT----T-------AAATAT----------------------------------------------------TCTAGTGTT-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GCTGCA---AATGCACGGAAAATGTCGTCCACAGTTATTGAATATTACAGCAAGCACGGGTGAGTCT---------A------CT---TTACTTTTCTTTCATTCAAAGTC--------------------------------G---------------------------------------------------------------------------------------------------TCAAGT-------------------GTGACACAAGTCTCAGAAACGATGAATATAC------------TTTT--------------------------------------------------------------------------------GACGTCTCA------------------GAGACGACT----------------------------CACGAGAC-GT-TAATTGAAAAAAAATTTCTATCG--AAATA-TCGAAGCATGATACAAATTTTTTGACAAGAGGAGTCTAGTCACTTGTGC--TTTTTGTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------T----------------ATAGTTTTTGTCGA--GTTAGATG------------------------------------TCAACCTTATTAGTTG------------------------------------------TAACCTGTA---------A-------------TAAG----------------------------TTTATTC----A-AATGTTTCTATT----------------------------------------------------TCTAGCATGAACAATATAAGC------------AGTAACTTGAATAATAATAGCAGTAATAACGTTTCGGCTTCGCCACTTGGTAATAATAATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................ATGTCGTCCACAGTTATTGAATAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200110
...GCA---AATGCACGGAAAATGTCGTCCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGTTTCGGCTTCGCCACT..............2211.00100010
.........................................ATATTACAGCAAGCACGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACT----------------------------CACGAGAC-GT-TAATTGAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
...............CGGAAAATGTCGTCCACAGTTATTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG------------------------------------------TAACCTGTA---------A-------------TAAG----------------------------TTTATT.....................................................................................................................................................................2411.00101000
...GCA---AATGCACGGAAAATGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
GTAAGT------GGAA-------------------------------------------------------------------------TAATAGT---------------TTAAA-----GAAATGT--------ATGATTAA---------------------------------------------------------------------------------------------------ATGTATAATTATTATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................AA-----GAAATGT--------ATGATTAA---------------------------------------------------------------------------------------------------ATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
droMoj3
TTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGATA-------AACTTTTATTT----A-CAATTTTTTATT----------------------------------------------------TTAGATACGAGTATTTTAGCT-------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCATCAGCCATCATCCGCAAGCCGCCCCCCAATGTGGTCGAGTATTACA---AACACAGGTGAGAAA---------TA-----AA---TTATTCTC---------------TTACT-----ACTTAAT--------AAGATTAA---------------------------------------------------------------------------------------------------TCAAATAAT----------------ATAAAA---------------------------------------------------------------------------------------------------TAAAC-ATTCTAATAACA--------GCCATAGTGTTGGATACTATTCGAAATC---------------------------A---------TCG-AA-TGATATATTGACATTCTGTTGTC--------------------------------------------AAGGCACTTTCGATATTTTTGTTTTTCTTAGTTTAGATCTAGTTTGTCGTTTGACAGTTGATTGAATTAAACAGAATTTGGACAAAATTTGCCTGACAAT---------GCAGGACTCATACCCATCTATTACTAAT-----------------------------------------------------------------------------G-------------TTGACAGAATCA---AATTTAGCTCTCTTTATGG------------------------------------------AGATCCGTTTACTTCTTCA-------------CA------------------------------ACTAACAAA-AA-CCAT----------------------------------------------------------------TTGTGTTTCTCGTTTTCCTCTG---CGACCACAGCCTGAGCAATAGCACCAG--------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:13 PM