ID:

dsi_27617

 Coordinate:

2l:23529269-23529418 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.0 -16.0 -15.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. dsi_27617  2l:23529323-23529343 -
  2. dsi_27501  x:19732359-19732379 +
star
  1. 2l:20636911-20636931 +
  2. 2l:22477713-22477733 -
  3. dsi_27617  2l:23529269-23529289 -
  4. 2r:1307060-1307080 -
  5. 3l:21281506-21281526 -
  6. 3r:198783-198803 +
  7. 3r:9549043-9549063 +
  8. 4:12289-12309 -
  9. x:17986379-17986399 -
  10. dsi_27501  x:19732413-19732433 +

Sense Strand Reads

GTCGGCCATAACTACATTGATCACCAGTGATCGGCTCGACATCATACGAAGTAAGTGGTAGTACCCTAAAATTACAATAATTGCATTCAGATATTTTTGCATAGGGTTACTGTGTAAACAAAATTTCTAATGTTCCCAACTTCGCAGGGTTAAGTTATTGGGTATAGGATTTGTGGTTTTTATACCCGCTACTCGTAGAGAAAAGGGGTATACTAGATTCATTGAAGAGTATGTAACAGGCAGAAGGAAG
*****************************************************************************************************************************..............(((.((.((((..(((....((((((((((........))))))))))))))))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................................................................AAGAGTATGTAACAGGCAGAAGGA.. 24 0 4 1.00 4 3 0 1 0 0 0 0 0
.............................................................................................................................TCTAATGTTCCCAACTTCGCA........................................................................................................ 21 0 2 0.50 1 0 1 0 0 0 0 0 0
...............ATTGATCACCAGTGATCGGCT...................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0
.........................................................................................................GTTACTGTGTAAACAAAAT.............................................................................................................................. 19 0 2 0.50 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TCGTAGAGAAAAGGGGTATACTA................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGAAGAGTATGTAACAGGCAGAAGGA.. 26 0 4 0.50 2 0 0 0 2 0 0 0 0
.................................................................................................................................ATGTTTCCGACTTCGCAGGATT................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................TTATACCCGCTACTCGTAGAG.................................................. 21 0 10 0.30 3 0 0 1 0 0 1 0 1
.................................................................................................................................................................................................................................AGAGTATGTAACAGGCAGA...... 19 0 4 0.25 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGAGTATGTAACAGGCAGAAGG... 23 0 4 0.25 1 1 0 0 0 0 0 0 0
....................................................................................AGTGAGATATTTATGCATAGG................................................................................................................................................. 21 3 8 0.25 2 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGTGTATGTAACAGGCAGAAGGA.. 24 1 9 0.22 2 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................................AGGAGTATGTAACAGGCAGAAGGAA. 25 1 5 0.20 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGAGTATGTAACAGGCAGAACGAA. 25 1 5 0.20 1 0 0 0 0 0 0 1 0
.........................................................................................................................................ATCTTCGCAGGGTTA.................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................GAAGAGTATGTAACAGG.......... 17 0 7 0.14 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGAGTATGTAACAGGAAGAAGGAAG 26 1 11 0.09 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGAGTATGTAACAGGAAGAAGGA.. 24 1 13 0.08 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTAGAGTAAAGGGGTATACGAGATTCA............................. 27 2 13 0.08 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TGAAGAGTATGTAACA............ 16 0 14 0.07 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAGGGGTATACTAGA................................. 16 0 15 0.07 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TCGTAGAGCAAAGGGGTATACTACTT................................ 26 3 16 0.06 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................TGAAGAGTATTTAACAGGCAGA...... 22 1 17 0.06 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGA.. 19 0 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAA. 20 0 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................GTATAGGACGTGTGGT......................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TCTGTAACAGGCAGAAGG... 18 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TATAGGATTTTTGGT......................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CAGCCGGTATTGATGTAACTAGTGGTCACTAGCCGAGCTGTAGTATGCTTCATTCACCATCATGGGATTTTAATGTTATTAACGTAAGTCTATAAAAACGTATCCCAATGACACATTTGTTTTAAAGATTACAAGGGTTGAAGCGTCCCAATTCAATAACCCATATCCTAAACACCAAAAATATGGGCGATGAGCATCTCTTTTCCCCATATGATCTAAGTAACTTCTCATACATTGTCCGTCTTCCTTC
**************************************************..............(((.((.((((..(((....((((((((((........))))))))))))))))))).)))***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
.........................................................................................................................................................................................................................AAGTAACTTCTCATACATTGTCCGT........ 25 0 3 3.00 9 5 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATACATTGTCCGTCTTCCT.. 21 0 20 2.30 46 46 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTCATACATTGTCCGTCTTCCT.. 22 0 4 1.00 4 0 0 0 4 0 0 0 0 0 0 0
.............................................................................................................................................AGCGTCCCAATTCAATAACCCATATCCT................................................................................. 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.................................CGAGCTGTAGTATGCTTCATTCACCAT.............................................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAAGTAACTTCTCATACATTGTCCGT........ 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCTCATACATTGTCCGTCTTCCTT. 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTAAGTAACTTCTCATACATTGTCCGT........ 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AGCAAAAATATGGTCGATGAGCAACT................................................... 26 3 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTCATACATTGTCCGTCTTCCTT. 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................ACGGATCCCAATGACTC........................................................................................................................................ 17 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................GTTATTAACGAAAGTCAATA............................................................................................................................................................ 20 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................ACCTCTTATCCCCATATTAT................................... 20 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTCATACAATGTCCGTCTTCCTT. 24 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACCTCTTATCCCCATATTA.................................... 19 3 20 0.20 4 0 0 1 0 1 0 1 0 0 0 1
...................................................................................................................TTTGTTTTAGAGATCAGAAGGG................................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................TCTCATACAATGTCCGTCTTCCT.. 23 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................ACGGATCCCAATGAC.......................................................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATGAGCATCTCTTTTTCCCATATGAT................................... 26 1 20 0.15 3 0 0 2 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TCTCATACATTGTACGTCTTCCTT. 24 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATACATTGTCCGTCTTCCTT. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATACATTGTCCGTCTTC.... 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATGGGCGATGAGCATCT................................................... 19 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATAATTTCTCATACATTGTCCGTCTT..... 27 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATCTTATAGATTGTCCGTCTTCCT.. 24 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGGGCGATGAGCATCT................................................... 16 0 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................CCCATATGATCTAAGTAA........................... 18 0 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................CTCATACTTTGTCCCTCTTCAT.. 22 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTCATACATTGTCCGTCTTT.... 21 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................AACCCTAGCCGAGCTGTA................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCACATACATTGTCAGTCTTCCT.. 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAAATGCATCACAATGAC.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................ATGACCCATCTCCTAA............................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CATACATTGTCCGTCTTCCT.. 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................TTTCTCATACATTGTCAGTCTTCCT.. 25 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:23529219-23529468 - dsi_27617 GTCGGCC-ATAA-CTACATTGATCACCAGTGATCGGCTCGAC--A--TCATACGAAGTAAGTGGTAGTACC---C-TAAAATTACA----------------------------ATAATTGCATTCAGATATTTTTGCA-------------------------------------------------------------TAGGGTTACTGTG-------TAAACAAAATTTCT------------------------------------------------------------------------------------A-AT-GTTCCC-AACTTCG--CAG-GGTTAA-----GTT----ATTGGGTATA---GG------------------A-----------------------TTTG--TGGTTT---TTATACCCGCTACTCGTA------G-AG-AAAAGGGGTATACTAGATTCATTG-AA-------GAGTATGTAACAGGCAGAAGGAAG
droSec2 scaffold_8:3287190-3287439 + GTCGGCC-ATAA-CTACATTGATCACCAGTGATCGGCTCGAT--A--TCATACGAAGTAAGTGGTAGTACC---C-TAAAATTACA----------------------------ATAATTACATTCAGATATTTTTGCA-------------------------------------------------------------TAGGGTTACTGTG-------TAAACAAACTTTCT------------------------------------------------------------------------------------A-AT-GTTCCC-AACTTCG--CAG-GGTTAA-----GTT----ATTGGGTATA---GG------------------A-----------------------TTTG--TGGTTT---TTATACCCGCTACTCGTA------G-AG-AAAAAGGGTATACTAGATTCATTG-AA-------GAGTATGTAACAGGCAGAAGGAAG
dm3 chr4:410228-410467 + TGAA-C----------------------------GGTGTGAT--C--TCAGGAACTGTAAAAGCTTGAAAG---T-TAAGATTA-GACAATTGTATTCT---------------------------AGAAGTTTTTACA----TTTTACAAATTTGTAAATTTGTA--------------------TTTCCCA---TTAA---------------A------CACAAAAACTAT------------------------------------------------------------------------------------C-AC-GCCTTC-AACTTTC--CAA-AAT-GC-----GTT----GATGCGTGT----TG------------------A-----------------------T-TT--TTGTTT---TCATACCCATTACTCGTA------G-AG-GGAAAGTGTATACTAGATTTGTTT-AA-------AGGTATGTAACAGGTAGAAGGAAG
droEre2 scaffold_4929:145742-145953 + AATA-ATA----------------------------------------------------------ATATA---A-TAATAATAAA----------------------------ATAATAATAATAAAATAATTCATGATACAT-ATACAAATGTATAAACTT-TG--------------------TTATC---------CATTGCGAAG---------------------------------------------------------------------------------------------------------------A-ATTTTC-AACCTAT--CTG-AAT-GCTCTTATTT----GTTATAAATT---GT------------------T-----------------------TTTA--TTCTTT---TTATATCCGTTGCTCGCA------G-AG-TAAAAGTGTATACTAGATTCGTTG-GA-------AAGTATGTAACAGGTAGAAGGAAA
droYak3 v2_chrUn_2695:11514-11703 - TAGA-ACA---------------------CA----------------------------------AAC------A-CAAGAATAAA---------------------TTGCATA----------TCATTTATTTTCACA------------------------------------------------------A------TAAGAAAACTGTAAAAT------------------------------TTGGTCAAAAC--------------------------------------------T----------CTGTAA-AT-TGTTTGTA----------------AA-----ATA----TTTGAGGAAT---GT------------------T-----------------------TATG--GAATAT---TTATACCCGTTACTCGTA------G-AG-TAAAAGGGTATACTAGATTCGTTG-AA-------AAGTATGTAACAGGCAGAAGGAAG
droEug1 scf7180000409667:20663-20870 - ACAA-T-------------------------------------------ATATGATGTAAATATTAACAAT---T-TGAA--TAAA------------------------------------------A-----TATAATATAT-GTT----------------------------------------------------------------------------------------------------------------TTACAG-------------------------TTTCA----CTTTGTTTTACTTTT---A-TT-TTTCAC-AATTTTGATCAAAATAAAA-----GAT----TTTCAGTTTA---A-------------------TTGA--------------------TTTATGCAATATTTATTTTACCCGTTATTCGTT------G-AT-TAATAGGGTATATTAGATTCGTTG-AC-------AAGTATGTTACAGGTAGAAGCAAG
droBia1 scf7180000301359:6599-6762 + CTAA-AT--------------------------------------------------------------------------GTATT----------------------------TTTATTATATTCATGTATTATTACT-------------------------------------------------------------TAAGTATCC-TTA-------TAACTAAAAACTAC--------------------------------------------------------------------------------------------------TTTTT--TAC-A-TTGA-----ACT----GT-----------TG------------------A-----------------------TAGT--TGATAA---TTATACCCGTTACTCGTA------G-AG-TAGAAGGGTATACTAGATTAGTCG-AA-------AAGTATGTAACAAGTAGAAGGAAG
droTak1 scf7180000415114:8465-8661 - TCGC-TCG---------------------TGATCGGTTCTAT--T--TCACTTGGGCTCTGTGATTTT----------------CA----------------------------AAGATGATTTTCAG---TTTTTGTG------------------------------------------------------------------------TA-------TAATCAATTTTT-T-----AACCAAGTTTAGCCTAACC-----------------------------------------------------------------------------------------GC-----CG-------------TGTTTGTGTTTT-------------A------------------------ATT--TGGTAG---TTATACCCGTTACTCGCA------G-AG-TAAAAGAGTATATTGTATTCGTGC-AA-------AAGTATGTAACAGGGAGAAGGAAG
droEle1 scf7180000490905:11186-11404 + ACTA-T---------------------------------------------ATGACTGAAATTATAATACC---C-TCTG--------------------------------------------------------------------CAAGGGTATAAAAAT-TGGACAGTTTTGTTTTTTAATTGTTACT-GTTATAA---------------A------AGCATAAA------ATATCTTA--------------------------------------------------------ATTTACTTTACT-----------------------------T-G----------CG-------------TATACGTCTAAA-------------AACATTGAAGCTATGACGATTTGCAGCT--CAATTA---TTATACCCT-----TGCA--------------GAGGGTATTGTAATTTCAGTC-AG-------AAGTTTGCAACGCATTGAAGGAGA
droRho1 scf7180000779739:56055-56266 + CTAT-A-----A-TTTCATAAATCAACAATTCTCGCTACCAT--C--GCA--CAACAAATGG------ACC---C-AAAAA---------------------------------AAAATAATATTCAGGTGTAA----------------------------------------------------------------------------GTG-------TAAACAAAAAATGT------------------------------------------------------------------------------------AA-A-AAAGTC-ACTCGAC--TAA-ATT-GA-----AGC----TTTTTGT------CT------------------A------------------------CAC--AGATAT---TTATACCCGTTACTCGTA------G-AG-TAAAAGGGTATATTGTATTCGTGC-AA-------AAGTATGTAACAGCTAGAAGGAAG
droFic1 scf7180000453824:370232-370438 + TCAT-G----------------------------------------------CAAAGCAACCACTAATTGG---T-TAAAGTCTAA----------------------------ATGAATG-GTACAAGTATTATTACC-------------------------------------------------------------TATTGTAAAGGTA-------TAAAGAACGTTT------TTTTGAAA---------------------------------------------------------------------------T-GTT------------------------ATTACAC----CATTTAAATC---GGATTTAATTTTATAAAAA-A-----------------------C-TT--AACTTA---TTATACCC-----TTGCA------G-AG-CAA-AGGGTATTATAATTTCAGTC-AG-------AAGTTTGCAACGCAGTGAAGGAGA
droKik1 scf7180000302707:573753-573959 - CAGT--------------------------GGCCAATTTGGCATT--TCATAAAAAGTAAAGATAAATTTA---C-CAAGTTTGCA----------------------------ATTT--------------TTATG--------------------------------------------AAATTTTTACCT---ATAA---------------A------AAAATAAA------A----------------------------------CT------------TCACACCTTTA----ATTTAATTTACT--------------TTTAA------------TT--AA-----AAA----ATTTTTTTTT---TA------------------A-----------------------TTTT--TAATTT---TTATACCCT-----TGC----------------AGGGTATTATAATTTCAGTC-AG-------AAGTTTGCAACGCAGTGAAGGAGA
droAna3 scaffold_13339:194940-195151 + GGTA-G-----------------------------GTTTTAT--A--TTATATGTAGTTTAAGGTTGTCATACTT-AGACATCGGA----------------------------ATTTGCATATTCGCATATTTTTA----------------------------------------------------------------AGGGTT--TAAG-------TT----------------ATTTGAAT--------------------------------------------------TCTG------------------A-AA-ACACCA-AACTTCA--TTT-CAATGA-----ATA----GATAGTTAAA---AA----------------CGA------------------T----CAGC--ATATTT---TTATACCCT-----TGCA--------------GAGGGTATTATAATTTTGGTC-AA-------AAGTGTGCAACGCAGTGAAGGAGA
droBip1 scf7180000393485:4381-4571 + ACGA-AGT----------------------------CA---------------------------AAAACC---C-AAAAGTTGTG----------------------------TCAATTTTGAGCTATTAAGTTAACA-------------------------------------------AGCGTTTCCT-GTT---------------------------ACTAAAATAATAATGTTCGAA--------------------------------------------------------AATTCCCT---------------------------TG--CAA-GAATAG-----GAT----ATTCTAGATAT--TT------------------A-----------------------TGTT--TATTTT---TTATACCCT-----TGC--------------AGAGGGTATTATAATTTTGTCC-AA-------AAGTGTGCAACGCAGTGAAGGAGA
dp5 XL_group3a:1753493-1753726 + GGCT-CTA---G-TTCCAGCGAATGCCAGTGAT----GCCAT--AGAATCTACAGGCTAAGTGGCAACGCC---C-AAAAATTAAG----------------------------TTGGCAGTA-----------------------------------------------------------------------------------------------------------------------------------------CCAAAATGCATTT------------TTTCGGTGGGA----ATT----------CC---A-ATTATTTTGGA----------------GA-----ATAAGCAGGTGATGGTAC--TA------------------G-----------------------TTAT--CACTTT---TTATACCCGATACTCAAA----GTG-AG-TATTGGGGTATATTAGATTTGTGG-TAAAAGTGGATGTGTGTAACCTCCAGAAGGAAT
droPer2 scaffold_187:59401-59599 - CATA------------------------------------------------CAAGATGTGTGCTTTT--------AAAAATAATGATTTTCTTATTCTAAGATTTTTAGCATG----------ACTAATATTTTTATT------------------------------------------------------A----------------TTG-------TGACTAATATTTGT------------------------------------------------------------------------------------AT-T-A-------------------------------TT----AATACTGGT----TG------------------G-----------------------TTTT--TGTTTT---TTATACCCGATACTCAAA----ATG-AG-TATTGGGGTATATTAGATTTGTGG-TAAAAGTGTATGTGTGTAACGTCCAGAAGGAAT
droWil2 scf2_1100000008394:1070-1290 + ATCAGTC-ATGATATTCATTACTTAACACTGATCGATTCGCC--T--TAACAGTAGG------------CA---C-ACAATTCAAA----------------------------TTATTTGAAATGCCTAATTCATGTA--------------------------------------------TATGATAC-------------------GTA-------TATATAAAATATGT------------------------------------------------------------------------------------AGAG-GTTCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------TGTT--TTTTTT---TTATACCATACACCCTTA------G-GG-TGAAATGGTATATTAAAGACGCCA-AA-------ATGTATGTAACAGGCAGAAGAAAG
droVir3 scaffold_12723:572630-572879 + TCGC-TTA-TTT-CTGGATTAATGGCC-------GATTGGCTAAT--TCGTACAGGGAAAATGTC---------CATAAATTCAGA-------------------------ACGAAAATTATTTACATTTATTGGTGAG-------------------------------------------------------------TACAGTT----TTAAATATGACAACAAGTCTGGT------------------------------------------------------------------------------------T-AT-GCTCTGTAATTTAT--CAA-GGT-GA-----GGA----ATTTCGTTTA---GA------------------ACCT--------------------TTCA--ATTTTT---TTTTACCCTGAACCCAATAAAAATG-GG-TATAAGGGTATATTGTATTTGTGCAAA-------ATGGATGCAACAGACAGAA-----
droMoj3 scaffold_6490:87150-87339 + AGTG-AG------------------------------------------------------CTATCATACC---T-CATAATGACA----------------------------AT----GGATTCTGACATACCTGTA-------------------------------------------------------------------------------------------------------------------------TCAAAGCCTAGTC----------------------A----GTTTGTACTACTTCT---A-TTTATTC---------A--CA----AAAG-----GCA----ATTGAGTATA--------------------------------------------------T--TGGTTT---TTATACCCTGAACCCATTAAAAATTGGGAAATCAGGGTATACTTGTTTTGTT--AA-------ATGTATGTAACAGGCAGAAGGAGG
droGri2 scaffold_15110:22587104-22587299 + CATC-ATA------------------------------------------TGTAATGAATGTATT---------T-ATAAAT--------------------------------------ATAATTTGGCGTAATTGCA----T-ATATATATAGTTATA---------------------AAATGTTCTC-------------------------------------------------CAGAAA-TTACCCTAATCTGCCAAGAG-TTTTTGTTTGGTTGAAG-----------TTTA------------------A-AA---------------------------------------TATTTAAATT---GT--------------------------------------------AT--TTCTCT---TTATACCCTGTACCCATTAAAAATA-AG-TA---------------------G------------CAAAGTAACAGGCAGAATGAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCGGCC-ATAA-CTACATTGATCACCAGTGATCGGCTCGAC--A--TCATACGAAGTAAGTGGTAGTACC---C-TAAAATTACA----------------------------ATAATTGCATTCAGATATTTTTGCA-------------------------------------------------------------TAGGGTTACTGTG-------TAAACAAAATTTCT------------------------------------------------------------------------------------A-AT-GTTCCC-AACTTCG--CAG-GGTTAA-----GTT----ATTGGGTATA---GG------------------A-----------------------TTTG--TGGTTT---TTATACCCGCTACTCGTA------G-AG-AAAAGGGGTATACTAGATTCATTG-AA-------GAGTATGTAACAGGCAGAAGGAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------GAGTATGTAACAGGCAGAAGGA..2441.00400000000103000000
.......................................................................................................................................................................................................................................TCT------------------------------------------------------------------------------------A-AT-GTTCCC-AACTTCG--CA...................................................................................................................................................................................2120.50100000100000000000
.................ATTGATCACCAGTGATCGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110000000000000000
............................................................................................................................................................................................................GTTACTGTG-------TAAACAAAAT..................................................................................................................................................................................................................................................................................................1920.50100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA------G-AG-AAAAGGGGTATACTA...........................................2320.50100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-AA-------GAGTATGTAACAGGCAGAAGGA..2640.50200000020000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCGCTACTCGTA------G-AG-..........................................................21100.30300000001110000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GAGTATGTAACAGGCAGA......1940.25100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------GAGTATGTAACAGGCAGAAGG...2340.25100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AA-------GAGTATGTAACAGG..........1770.14100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-AA-------GAGTATGTAACA............16140.07100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGGTATACTAGA.........................................16150.07100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGA..19200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAA.20200.05100000010000000000
droSec2
GTCGGCC-ATAA-CTACATTGATCACCAGTGATCGGCTCGAT--A--TCATACGAAGTAAGTGGTAGTACC---C-TAAAATTACA----------------------------ATAATTACATTCAGATATTTTTGCA-------------------------------------------------------------TAGGGTTACTGTG-------TAAACAAACTTTCT------------------------------------------------------------------------------------A-AT-GTTCCC-AACTTCG--CAG-GGTTAA-----GTT----ATTGGGTATA---GG------------------A-----------------------TTTG--TGGTTT---TTATACCCGCTACTCGTA------G-AG-AAAAAGGGTATACTAGATTCATTG-AA-------GAGTATGTAACAGGCAGAAGGAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAA.19200.0510100
dm3
TGAA-C----------------------------GGTGTGAT--C--TCAGGAACTGTAAAAGCTTGAAAG---T-TAAGATTA-GACAATTGTATTCT---------------------------AGAAGTTTTTACA----TTTTACAAATTTGTAAATTTGTA--------------------TTTCCCA---TTAA---------------A------CACAAAAACTAT------------------------------------------------------------------------------------C-AC-GCCTTC-AACTTTC--CAA-AAT-GC-----GTT----GATGCGTGT----TG------------------A-----------------------T-TT--TTGTTT---TCATACCCATTACTCGTA------G-AG-GGAAAGTGTATACTAGATTTGTTT-AA-------AGGTATGTAACAGGTAGAAGGAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................TT----GATGCGTGT----TG------------------A-----------------------T-TT--TTGT............................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000002000000000000000010000000000000000000000000
................................................CAGGAACTGTAAAAGCTTGAAAG---T-............................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTCGTA------G-AG-GGAAAGTG..................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................T--C--TCAGGAACTGTAAAAGCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000
....................................TGTGAT--C--TCAGGAACTGTAAAAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------G-AG-GGAAAGTGTATA..............................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAT------------------------------------------------------------------------------------C-AC-GCCTTC-AACTTTC--CAA-AAT-GC-----......................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GTGAT--C--TCAGGAACTGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------G-AG-GGAAAGTGTATACTAG..........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................T----GATGCGTGT----TG------------------A-----------------------T-TT--TTGTT...........................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTA------G-AG-GGAAAGTGT.................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTT-AA-------AGGTATGTAACAGGTAGA......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACCCATTACTCGTA------G-AG-G.........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------G-AG-GGAAAGTGTATA..............................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
........................................AT--C--TCAGGAACTGTAAAAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2161.3380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000110000001100000000100000000000000100100000000000000000
TGAA-C----------------------------GGTGTGAT--C--TCAGGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTTGTTT-AA-------AGGT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTC--CAA-AAT-GC-----GTT----GATGCGT........................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TA--------------------TTTCCCA---TTAA---------------A------CACAAAAACTAT------------------------------------------------------------------------------------..........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTTC--CAA-AAT-GC-----GTT----GATGCGTGT----..................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TT----GATGCGTGT----TG------------------A-----------------------T-TT--TTGTT...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................C-AACTTTC--CAA-AAT-GC-----GTT----GAA............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AA-------AGGTATGTAACAGGTAGAAG....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AACTGTAAAAGCTTGAAAG---T-TAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGTGAT--C--TCAGGAACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CTTTC--CAA-AAT-GC-----GTT----GATGCGTGT----T.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGTGAT--C--TCAGGAACTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTTGTTT-AA-------AGGTAT..................2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT---TCATACCCATTACTCG.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AATTGTATTCT---------------------------AGAAGTTTTT................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TGTATTCT---------------------------AGAAGTTTTTACA----TTTTAC...................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTGAAAG---T-TAAGATTA-GACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTTGTTT-AA-------AGGTATGT................2411.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTT---TCATACCCATTACTC........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA------G-AG-GGAAAGTGTATACTAGA.........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GGTGTGAT--C--TCAGGAACTGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................A---TTAA---------------A------CACAAAAACTAT------------------------------------------------------------------------------------C-AC-GCCTT................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AGGTATGTAACAGGTAGAAG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTTT-AA-------AGGTATGTAACAGG..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------G-AG-GGAAAGTGTATACT............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CTAT------------------------------------------------------------------------------------C-AC-GCCTTC-AACTTTC--C....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTATACTAGATTTGT....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTTGTTT-AA-------AGGTAT..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TA--------------------TTTCCCA---TTAA---------------A------CACAAAAACTAT------------------------------------------------------------------------------------C-AC-G....................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-AA-------AGGTATGTAACAGGTAGAAGG...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TT----GATGCGTGT----TG------------------A-----------------------T-TT--TTGTTT---TCA....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................CAGGAACTGTAAAAGCTTGAAAG---T-T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTC--CAA-AAT-GC-----GTT----GATGCGTG.......................................................................................................................................................2211.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGTGAT--C--TCAGGAACTGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TT----GATGCGTGT----TG------------------A-----------------------T-TT--TTG.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................A-GACAATTGTATTCT---------------------------AGAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................T-GC-----GTT----GATGCGTGT----TG------------------A-----------------------T-TT--TTGT............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTATACTAGATTTGTTT-AA-------AGGT....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATACTAGATTTGTTT-AA-------AGGTA...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................GGTGTGAT--C--TCAGGAACTGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA------G-AG-GGAAAGTGTATACTAGATTT......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGTAAAAGCTTGAAAG---T-TAAGATTA-GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CCTTC-AACTTTC--CAA-AAT-GC-----GTT----GAT............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AA-------AGGTATGTAACAGGTA........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................AACTGTAAAAGCTTGAAAG---T-TAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AG-GGAAAGTGTATACTAGATTTGTT...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CAA-AAT-GC-----GTT----GATGCGTGT----T.................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..AA-C----------------------------GGTGTGAT--C--TCAGGAACTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010000000000000000000000000000003000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGG...19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000100000000000000100000010000000000000000000000000000
...............................................TCAGGAACTGTAAAAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAA.20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000
.........................................T--C--TCAGGAACTGTAAAAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................AT--C--TCAGGAACTGTAAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCATTACTCGTA------G-AG-..........................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATA-ATA----------------------------------------------------------ATATA---A-TAATAATAAA----------------------------ATAATAATAATAAAATAATTCATGATACAT-ATACAAATGTATAAACTT-TG--------------------TTATC---------CATTGCGAAG---------------------------------------------------------------------------------------------------------------A-ATTTTC-AACCTAT--CTG-AAT-GCTCTTATTT----GTTATAAATT---GT------------------T-----------------------TTTA--TTCTTT---TTATATCCGTTGCTCGCA------G-AG-TAAAAGTGTATACTAGATTCGTTG-GA-------AAGTATGTAACAGGTAGAAGGAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG-GA-------AAG.....................20100.1010000010
droYak3
TAGA-ACA---------------------CA----------------------------------AAC------A-CAAGAATAAA---------------------TTGCATA----------TCATTTATTTTCACA------------------------------------------------------A------TAAGAAAACTGTAAAAT------------------------------TTGGTCAAAAC--------------------------------------------T----------CTGTAA-AT-TGTTTGTA----------------AA-----ATA----TTTGAGGAAT---GT------------------T-----------------------TATG--GAATAT---TTATACCCGTTACTCGTA------G-AG-TAAAAGGGTATACTAGATTCGTTG-AA-------AAGTATGTAACAGGCAGAAGGAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..GA-ACA---------------------CA----------------------------------AAC------A-CAAGAATAAA---------------------TTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
TAGA-ACA---------------------CA----------------------------------AAC------A-CAAGAATAAA---------------------TTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..............................A----------------------------------AAC------A-CAAGAATAAA---------------------TTGCATA----------TCATT.......................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
......CA---------------------CA----------------------------------AAC------A-CAAGAATAAA---------------------TTGCATA----------............................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TATG--GAATAT---TTATACCCGTTACTCG.......................................................................2611.00100000010000
..................................................................................TAAA---------------------TTGCATA----------TCATTTATTTTCACA------------------------------------------------------A------................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................TA----TTTGAGGAAT---GT------------------T-----------------------TATG--GAATAT---T......................................................................................2630.33101000000000
............................................................................................................................TCATTTATTTTCACA------------------------------------------------------A------TAAGAAAACTG.....................................................................................................................................................................................................................................................................................................................2730.33101000000000
................................................................................................................TA----------TCATTTATTTTCACA------------------------------------------------------A------TAAGAAAAC.......................................................................................................................................................................................................................................................................................................................2730.33101000000000
...................................................................................................................................................................................................................................................................................................................................................................TA----TTTGAGGAAT---GT------------------T-----------------------TATG--GAATAT---TT.....................................................................................2730.33100000010000
droEug1
ACAA-T-------------------------------------------ATATGATGTAAATATTAACAAT---T-TGAA--TAAA------------------------------------------A-----TATAATATAT-GTT----------------------------------------------------------------------------------------------------------------TTACAG-------------------------TTTCA----CTTTGTTTTACTTTT---A-TT-TTTCAC-AATTTTGATCAAAATAAAA-----GAT----TTTCAGTTTA---A-------------------TTGA--------------------TTTATGCAATATTTATTTTACCCGTTATTCGTT------G-AT-TAATAGGGTATATTAGATTCGTTG-AC-------AAGTATGTTACAGGTAGAAGCAAGSizeHit CountTotal NormTotal
No Reads
droBia1
CTAA-AT--------------------------------------------------------------------------GTATT----------------------------TTTATTATATTCATGTATTATTACT-------------------------------------------------------------TAAGTATCC-TTA-------TAACTAAAAACTAC--------------------------------------------------------------------------------------------------TTTTT--TAC-A-TTGA-----ACT----GT-----------TG------------------A-----------------------TAGT--TGATAA---TTATACCCGTTACTCGTA------G-AG-TAGAAGGGTATACTAGATTAGTCG-AA-------AAGTATGTAACAAGTAGAAGGAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TCGC-TCG---------------------TGATCGGTTCTAT--T--TCACTTGGGCTCTGTGATTTT----------------CA----------------------------AAGATGATTTTCAG---TTTTTGTG------------------------------------------------------------------------TA-------TAATCAATTTTT-T-----AACCAAGTTTAGCCTAACC-----------------------------------------------------------------------------------------GC-----CG-------------TGTTTGTGTTTT-------------A------------------------ATT--TGGTAG---TTATACCCGTTACTCGCA------G-AG-TAAAAGAGTATATTGTATTCGTGC-AA-------AAGTATGTAACAGGGAGAAGGAAGSizeHit CountTotal NormTotal
No Reads
droEle1
ACTA-T---------------------------------------------ATGACTGAAATTATAATACC---C-TCTG--------------------------------------------------------------------CAAGGGTATAAAAAT-TGGACAGTTTTGTTTTTTAATTGTTACT-GTTATAA---------------A------AGCATAAA------ATATCTTA--------------------------------------------------------ATTTACTTTACT-----------------------------T-G----------CG-------------TATACGTCTAAA-------------AACATTGAAGCTATGACGATTTGCAGCT--CAATTA---TTATACCCT-----TGCA--------------GAGGGTATTGTAATTTCAGTC-AG-------AAGTTTGCAACGCATTGAAGGAGASizeHit CountTotal NormTotal
No Reads
droRho1
CTAT-A-----A-TTTCATAAATCAACAATTCTCGCTACCAT--C--GCA--CAACAAATGG------ACC---C-AAAAA---------------------------------AAAATAATATTCAGGTGTAA----------------------------------------------------------------------------GTG-------TAAACAAAAAATGT------------------------------------------------------------------------------------AA-A-AAAGTC-ACTCGAC--TAA-ATT-GA-----AGC----TTTTTGT------CT------------------A------------------------CAC--AGATAT---TTATACCCGTTACTCGTA------G-AG-TAAAAGGGTATATTGTATTCGTGC-AA-------AAGTATGTAACAGCTAGAAGGAAGSizeHit CountTotal NormTotal
No Reads
droFic1
TCAT-G----------------------------------------------CAAAGCAACCACTAATTGG---T-TAAAGTCTAA----------------------------ATGAATG-GTACAAGTATTATTACC-------------------------------------------------------------TATTGTAAAGGTA-------TAAAGAACGTTT------TTTTGAAA---------------------------------------------------------------------------T-GTT------------------------ATTACAC----CATTTAAATC---GGATTTAATTTTATAAAAA-A-----------------------C-TT--AACTTA---TTATACCC-----TTGCA------G-AG-CAA-AGGGTATTATAATTTCAGTC-AG-------AAGTTTGCAACGCAGTGAAGGAGASizeHit CountTotal NormTotal
No Reads
droKik1
CAGT--------------------------GGCCAATTTGGCATT--TCATAAAAAGTAAAGATAAATTTA---C-CAAGTTTGCA----------------------------ATTT--------------TTATG--------------------------------------------AAATTTTTACCT---ATAA---------------A------AAAATAAA------A----------------------------------CT------------TCACACCTTTA----ATTTAATTTACT--------------TTTAA------------TT--AA-----AAA----ATTTTTTTTT---TA------------------A-----------------------TTTT--TAATTT---TTATACCCT-----TGC----------------AGGGTATTATAATTTCAGTC-AG-------AAGTTTGCAACGCAGTGAAGGAGASizeHit CountTotal NormTotal
No Reads
droAna3
GGTA-G-----------------------------GTTTTAT--A--TTATATGTAGTTTAAGGTTGTCATACTT-AGACATCGGA----------------------------ATTTGCATATTCGCATATTTTTA----------------------------------------------------------------AGGGTT--TAAG-------TT----------------ATTTGAAT--------------------------------------------------TCTG------------------A-AA-ACACCA-AACTTCA--TTT-CAATGA-----ATA----GATAGTTAAA---AA----------------CGA------------------T----CAGC--ATATTT---TTATACCCT-----TGCA--------------GAGGGTATTATAATTTTGGTC-AA-------AAGTGTGCAACGCAGTGAAGGAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTC-AA-------AAGTGTGCAACGC...........24200.153000030
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTC-AA-------AAGTGTGCAACGCAGT........26200.153300000
.............................................................................................................................................................................................................................T----------------ATTTGAAT--------------------------------------------------TCTG------------------A-AA-ACACC................................................................................................................................................................................................21200.051010000
droBip1
ACGA-AGT----------------------------CA---------------------------AAAACC---C-AAAAGTTGTG----------------------------TCAATTTTGAGCTATTAAGTTAACA-------------------------------------------AGCGTTTCCT-GTT---------------------------ACTAAAATAATAATGTTCGAA--------------------------------------------------------AATTCCCT---------------------------TG--CAA-GAATAG-----GAT----ATTCTAGATAT--TT------------------A-----------------------TGTT--TATTTT---TTATACCCT-----TGC--------------AGAGGGTATTATAATTTTGTCC-AA-------AAGTGTGCAACGCAGTGAAGGAGASizeHit CountTotal NormTotal
No Reads
dp5
GGCT-CTA---G-TTCCAGCGAATGCCAGTGAT----GCCAT--AGAATCTACAGGCTAAGTGGCAACGCC---C-AAAAATTAAG----------------------------TTGGCAGTA-----------------------------------------------------------------------------------------------------------------------------------------CCAAAATGCATTT------------TTTCGGTGGGA----ATT----------CC---A-ATTATTTTGGA----------------GA-----ATAAGCAGGTGATGGTAC--TA------------------G-----------------------TTAT--CACTTT---TTATACCCGATACTCAAA----GTG-AG-TATTGGGGTATATTAGATTTGTGG-TAAAAGTGGATGTGTGTAACCTCCAGAAGGAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG-TAAAAGTGGATGTGT..................222093.1018620186200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG-TAAAAGTGGATGTGT..................21209.45189018600300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG-TAAAAGTGGATGTGTGTAACC............2832.6780000003050
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG-TAAAAGTGGATGTGTG.................21202.004000000004000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGG-TAAAAGTGG........................21201.853700000000370
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG-TAAAAGTGGATGTGTGTA...............23200.751500000001500
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG-TAAAAGTGGATGTGTGTAACC............2730.6720000000020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGG-TAAAAGTGGATGTGTG.................24200.4080800000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTATATTAGATTTGTGG-.................................20200.3060600000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGG-TAAAAGTGG........................23200.2550000000050
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAA----GTG-AG-TATTGGGGTA................................................2150.2010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG-TAAAAGTGGATGTGTGT................23200.2040000000400
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAA----GTG-AG-TATTGGGGTAT...............................................2350.2010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TAAAAGTGGATGTGTGTA...............20200.2040000000040
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAA----GTG-AG-TATTGGGGTAT...............................................2150.2010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----GTG-AG-TATTGGGGT.................................................1850.2010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-TAAAAGTGGATGTGTG.................19200.1530300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG-TAAAAGTGGATGT....................20200.1530000030000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGTGG-.................................21200.1530000000300
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGG-TAAAAGTGGATGT....................24200.1530300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-AG-TATTGGGGTATATTT...........................................2090.1110100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGG-TAAAAGTGGA.......................24200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGG-TAAAAGT..........................21200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGGTATATTAGATTTGTGG-T................................23200.1020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TAAAAGTGGATGTGTGTAA..............20200.1020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-TAAAAGTGGATGTGTGTAA..............22200.1020000000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG-TAAAAGTGGAT......................18200.1020020000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGG-TAAAAGTGGATG.....................24200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGG-TAAAAGTGG........................20200.1020000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-AG-TATTGGGGTATATTG...........................................20110.0910000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG-TAAAAGTGGATGTGTGTAACCC...........29170.0610000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG-TAAAAGTGGATGTGTGTAACCC...........28170.0610000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGG-TAAAAGTGGATGG....................20200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGG-TAAAAGTGG........................25200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG-TAAAAGTGGATGTGTC.................21200.0510000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGG-TAA..............................20200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGG-TAAAA............................21200.0510000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGG-TAAAAGTGGATG.....................18200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGG-TAAAAGTGGAT......................28200.0510010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGATTTGTGG-TAAAA............................20200.0510000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGG-TAAAAGTGGATGTGT..................20200.0510000100000
droPer2
CATA------------------------------------------------CAAGATGTGTGCTTTT--------AAAAATAATGATTTTCTTATTCTAAGATTTTTAGCATG----------ACTAATATTTTTATT------------------------------------------------------A----------------TTG-------TGACTAATATTTGT------------------------------------------------------------------------------------AT-T-A-------------------------------TT----AATACTGGT----TG------------------G-----------------------TTTT--TGTTTT---TTATACCCGATACTCAAA----ATG-AG-TATTGGGGTATATTAGATTTGTGG-TAAAAGTGTATGTGTGTAACGTCCAGAAGGAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGTTTT---TTATACCCGATACTCAAA----A................................................................27120.081010000
droWil2
ATCAGTC-ATGATATTCATTACTTAACACTGATCGATTCGCC--T--TAACAGTAGG------------CA---C-ACAATTCAAA----------------------------TTATTTGAAATGCCTAATTCATGTA--------------------------------------------TATGATAC-------------------GTA-------TATATAAAATATGT------------------------------------------------------------------------------------AGAG-GTTCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------TGTT--TTTTTT---TTATACCATACACCCTTA------G-GG-TGAAATGGTATATTAAAGACGCCA-AA-------ATGTATGTAACAGGCAGAAGAAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................TACTTAACACTGATCGATTCGCC--T--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00404000
.......................TAACACTGATCGATTCGCC--T--TAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00402020
...............TCATTACTTAACACTGATCGATTCGCC--T--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00201010
..................TTACTTAACACTGATCGATTCGCC--T--T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
................................TCGATTCGCC--T--TAACAGTAGG------------CA---C-A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
....................................................................................................................................................................................................................A-------TATATAAAATATGT------------------------------------------------------------------------------------AGAG-GTTCGA-A.............................................................................................................................................................................................2630.33101000
.....................................................................................................................................................................................................................................................................................................................................TCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------TGTT--T...............................................................................................2430.33100010
.........................................................................................................................................................................................................................................T------------------------------------------------------------------------------------AGAG-GTTCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------T.....................................................................................................2730.33100010
.......................................................................................................................................................................................................................................................................................................................................GA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------TGTT--TTTT............................................................................................2530.33100010
.....................................................................................................................................................................................................................................................................................................................................TCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------TGTT--TTT.............................................................................................2630.33100010
...............................................................................................................................................................................................................................................................................................................................GAG-GTTCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------TG....................................................................................................2630.33101000
.........................................................................................................................................................................................................................................T------------------------------------------------------------------------------------AGAG-GTTCGA-ATCCTAG--CGG-AA-------------------------------------------------A-GT--------------------......................................................................................................2630.33100010
............................................T--TAACAGTAGG------------CA---C-ACAATTCAAA----------------------------TTAT..................................................................................................................................................................................................................................................................................................................................................................................................................28200.15303000
.........................................................................................................................................................................................................................................T------------------------------------------------------------------------------------AGAG-GTTCGA-ATCCTAG--CGG-.................................................................................................................................................................................21140.07100010
........................................................................................................................................................................................................................................GT------------------------------------------------------------------------------------AGAG-GTTCGA-ATCCTAG--CG...................................................................................................................................................................................21140.07101000
droVir3
TCGC-TTA-TTT-CTGGATTAATGGCC-------GATTGGCTAAT--TCGTACAGGGAAAATGTC---------CATAAATTCAGA-------------------------ACGAAAATTATTTACATTTATTGGTGAG-------------------------------------------------------------TACAGTT----TTAAATATGACAACAAGTCTGGT------------------------------------------------------------------------------------T-AT-GCTCTGTAATTTAT--CAA-GGT-GA-----GGA----ATTTCGTTTA---GA------------------ACCT--------------------TTCA--ATTTTT---TTTTACCCTGAACCCAATAAAAATG-GG-TATAAGGGTATATTGTATTTGTGCAAA-------ATGGATGCAACAGACAGAA-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTGCAAA-------ATGGATGCAACA............2411.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................AAATTCAGA-------------------------ACGAAAATTATTTACATT.......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
............................................................................TAAATTCAGA-------------------------ACGAAAATTATTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTATAT.............................................24200.5010002000003000000000000000020011000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTATATT............................................25200.153000000001000000000000000000020000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATG-GG-TATAAGGGTATATTGTAT........................................26200.153000000000000000000000000020100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTATATTG...........................................26190.112001000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTATATTGT..........................................27190.112000000000000000000000000011000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATTTGTGCAAA-------A.......................20200.102000000000000000000000000200000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAATAAAAATG-GG-TATAAGGGT.................................................26140.071000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GG-TATAAGGGTATATTGTATTTGTGC..................................27200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATTTGTGCAAA-------ATG.....................21200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTATATC............................................25200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTA................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG-GG-TATAAGGGTATATTGT..........................................21200.051000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAATG-GG-TATAAGGGTATA..............................................23200.051000000000000000000000001000000000000000000000000000000000000000
droMoj3
AGTG-AG------------------------------------------------------CTATCATACC---T-CATAATGACA----------------------------AT----GGATTCTGACATACCTGTA-------------------------------------------------------------------------------------------------------------------------TCAAAGCCTAGTC----------------------A----GTTTGTACTACTTCT---A-TTTATTC---------A--CA----AAAG-----GCA----ATTGAGTATA--------------------------------------------------T--TGGTTT---TTATACCCTGAACCCATTAAAAATTGGGAAATCAGGGTATACTTGTTTTGTT--AA-------ATGTATGTAACAGGCAGAAGGAGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCTGAACCCATTAAA..................................................................19200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AA-------ATGTATGTAACAGGCAG.......21200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAG.22200.051100000
droGri2
CATC-ATA------------------------------------------TGTAATGAATGTATT---------T-ATAAAT--------------------------------------ATAATTTGGCGTAATTGCA----T-ATATATATAGTTATA---------------------AAATGTTCTC-------------------------------------------------CAGAAA-TTACCCTAATCTGCCAAGAG-TTTTTGTTTGGTTGAAG-----------TTTA------------------A-AA---------------------------------------TATTTAAATT---GT--------------------------------------------AT--TTCTCT---TTATACCCTGTACCCATTAAAAATA-AG-TA---------------------G------------CAAAGTAACAGGCAGAATGAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:57 AM