dsi_27604

GCCGTTATGTCTGCAACATCGACCTCTGAACGCTCCAACTCCGAAGACAGGTAATAGATAGGCATCCAAAAATCCACGTTTTGGCCATAATATCCCGCTTCCAGCCCGTCGAATCCCTGCCTAACGGAGGTGCTCAGGAATTGTGCCAATATCCAGTCGCTGGAGAGCTTGAACTACGAATATAACGACGTTCTGCTGACCGAACCCAACGAGGGGAAGATGATTACGCCGAATCCGTACTCCTTTAGCG ************************************************..........(((((((((((.......))))))..............(((((((((.(((.............))).)).)))..))))..)))))....(((((...))))).(((..((((..((.......))..)))).)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M023 head	M053 female body	SRR902008 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553487 NRT_0-2 hours eggs
...........TGCAACATCGACCTCTGAACG..........................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTCTGCTGACCGAACCCAACGAGGGGA.................................	27	0	2	0.50	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GCTGACCGAATCCAACGA......................................	18	1	2	0.50	1	0	1	0	0	0	0	0	0	0
............................................................................................................TCGAATCCCTGCTTAACCGAG.........................................................................................................................	21	2	3	0.33	1	0	0	1	0	0	0	0	0	0
.............................................................................................................................................TGTGCCAATATCCAGTCGCTGGAGAGCT.................................................................................	28	0	3	0.33	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................CCTAACGGAGGTGCTCAGGAG..............................................................................................................	21	1	3	0.33	1	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................TTGAACTACGAATATAACGACGTC..........................................................	24	1	3	0.33	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................AACGGAGGTGCTCAGGAA..............................................................................................................	18	0	3	0.33	1	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................CCTAACCCAAGGAGGG...................................	16	2	13	0.08	1	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................TAACGATGTTCCGCTGACT.................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................GAAGCGAACGAGGGGAA................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1

CGGCAATACAGACGTTGTAGCTGGAGACTTGCGAGGTTGAGGCTTCTGTCCATTATCTATCCGTAGGTTTTTAGGTGCAAAACCGGTATTATAGGGCGAAGGTCGGGCAGCTTAGGGACGGATTGCCTCCACGAGTCCTTAACACGGTTATAGGTCAGCGACCTCTCGAACTTGATGCTTATATTGCTGCAAGACGACTGGCTTGGGTTGCTCCCCTTCTACTAATGCGGCTTAGGCATGAGGAAATCGC ************************************************..........(((((((((((.......))))))..............(((((((((.(((.............))).)).)))..))))..)))))....(((((...))))).(((..((((..((.......))..)))).)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR1275483 Male prepupae	SRR902009 testis	O002 Head	SRR1275485 Male prepupae	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................GCGACCTCTCGAACTTGATGCTT......................................................................	23	0	3	0.67	2	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCGGCTTAGGCATGAGGAAAT...	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CGGCTTAGGCATGAGGAAATC..	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TGCGGCTTAGGCATGAGGAAA....	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATGCGGCTTAGGCATGAGGAA.....	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GGCTTAGGCATGAGGAAATC..	20	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................GCTGGAGACTTGCGAGGTTGA..................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGACGACTGGCTTAGGTTGCT......................................	21	1	2	0.50	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................ACACGGTTATAGGTCAGCGAC........................................................................................	21	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CGGATTGCCTCCACGAGTCCTTAACACGGT......................................................................................................	30	0	3	0.33	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................CTTATATTGCTGCAGAACGA.....................................................	20	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................AGGTCGGGCAGCTTAGGGACG..................................................................................................................................	21	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0
.....................................................................TCTAGCTGCAGAACCGGTATTAT..............................................................................................................................................................	23	3	4	0.25	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................TCCACGAGTCCTCGACAC.........................................................................................................	18	2	9	0.22	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................GCAAGACGGCTGGCTTGA............................................	18	2	5	0.20	1	0	0	0	0	1	0	0	0	0	0
.....................................................................TCTAGCTGCAGAACCGGTATTA...............................................................................................................................................................	22	3	5	0.20	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................GCAAGACGGCTGACTTG.............................................	17	2	9	0.11	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................ATGCAAGATGGCTGGCTTG.............................................	19	3	10	0.10	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................ATTTCCTCCACTAGTC.................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................ATGATTGGCCTGGGTTGC.......................................	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TCATAATGCTGCCAGACG......................................................	18	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................TGCTCCCCTTCTATTAT.........................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:8441813-8442062 -	dsi_27604	G-CCGTTATGTCTGCAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAA------TA---------------------------GATAGGCATCCAA-----------------AAATCCACGTTTTGGCC----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGCCCGTCGAATCCCTGCCTAACGGAGGTGCTCAGGAATTGTGCCAATATCCAGTCGCTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTCTGCTGACCGAACCCAAC---GAGG---GGAAGATGATTACGCCGAAT---CCGTACTCCTTTAGC------G
droSec2	scaffold_1721:1600-1848 -		G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAG------TA---------------------------GATAGGCATCCAA-----------------A-ATCTATATTATGGCC----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGTCCGTCGAATACCTGCCTAACAGAGGTGCTCAGGAATTGTGCCAATATCCAGTCGTTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTCTGCTGACCGAACCCAAC---GAGG---GGAAGATGATTACGTCGAAT---CCGTACTCCTTTAGC------G
dm3	chr3R:12818853-12819102 +		G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAG------TA---------------------------GATAGGCATTCAA-----------------AAATCCATGTAATGACC----------------------AA-----------------AAT------ATCCCG----CTTC-----CAGCCCGTTGAATCCCTGCCTAACGGAGGTCCTCAGGAATTGTGCCAACATTCAGTCGCTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTTTGCTGACCGAAGACAAC---GTGG---GGAAGATGATTACGCCGAAT---CCGTATTCCTTTAGT------G
droEre2	scaffold_4770:8816234-8816482 -		G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAT-------A---------------------------CCCGGGCATCCGA-----------------AAATCAACGTAATGGTC----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGCCCATCGAATCCCTGCTTAACGGAGGTGCTCAGGAACTGTGCCAATATCCAGTCACTGGAGAGCTTG------------------AA---CTACGAATACAACGACGTTCTGTTGACCGAATCCAGC---GAGG---GGAAGATGATTACGCCGAAT---CCGTACTCCTTTAGC------G
droYak3	3R:11569385-11569634 -		G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAGGACAGGTAG------TA---------------------------GATGGGCATCCAA-----------------AAATCCACGGCATGGTC----------------------AT-----------------AAT------ATTCCG----CTTG-----CAGCCCATCGAATCCCTGCCTAACGGAGGTGCTCAGGAACTGTGCCAATATCCAGTCCCTGGAGAGCTTG------------------AA---CTACGAATACAACGACGTGTTGTTAAGCGAATCCAAC---GAGG---GGAAGATGATTACGCCGAAT---CCGTACTCCTTTAGC------G
droEug1	scf7180000409804:251551-251804 +		G-GCGTTATGTCTGGAACATCGACATCTGAAC---GCTCCAACTCTGAAGACAGGTGA------GAT---CA---------------------GCTGAGTAGTCAA-----------------AGATCCAGATTATAATC----------------------CT------A----------AAT------GTTCCC----ATTC-----CAGTCCATCGAATCCCGGCCTGACGGAGGTGCTCAGAAATTGTGCGAATATCCAGTCACTGGAAAGCCTG------------------AA---CTACGAATACAACGACGTCTTCCTCACCGAATCCAGC---GAGG---GAAAGATGATAACACCGAAT---CCATACTCTTTCAGC------G
droBia1	scf7180000299102:764329-764584 +		G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAGGACAGGTGA------GAG---TC---------------------GCGGGGCACCAAA-----------------GAGTATAGTTAACAATG----------------------TT-----------------AAT------ATCCCC----ATGG-----CAGCCCATTGAATCCGTGCCTGACGGAGGTGCTCAGGACCTGTGCCAACATCCAGTCGATAGAGAGCTTG------------------AA---CTACGAGTACAACGACGTGTTCCTCACCGAATCCAGC---GAGGGAGGCAAAATGATAACGCCGAAT---CCGTACTCCTTCAGT------G
droTak1	scf7180000415377:344577-344837 -		G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GTTCCAACTCCGAAGACAGGTGA------GACAC-TCT-----TT----------------GTGAGTCTAA-----------------AAATTCAGATAATAATC----------------------TT-----------------TAT------ATGGCT----ATTC-----CAGCCCATCGAATCCAGGCCTGACGGAGGTGCTCAGGAACTGTGCAAATATCCAGTCGGTAGAAAGCTTA------------------AA---CTACGAATATAACGACGTTTTCCTGACCGAATCCAAC---GAGG---GCAAGATGATAACCCCAAAT---CCATACTCCTTCAACCTTTCGG
droEle1	scf7180000486474:1885752-1886000 +		G-CAGTTATGTCTGGAACATCGACTTCTGAAC---GCTCCAACTCCGAAGACAGGTAA------GAC-G-TT------------------------GGACACCCAC-----------------GCTTCCAGAACAGAGCC----------------------TC-----------------CAT------ATCCCG----GTTC-----CAGCCCATCTAATCCCGGCCTGACGGAGGTGCTCAGGACCTGTGCAAACATTCAGTCGGTGGAGAGCTTG------------------AA---CTACGAATACAACGACGTTTTTCTGACCGGTCCCAGC---AACGGTAGCAAGATGCTTTCGCCGAAT---CCGTACTCCTT-----------
droRho1	scf7180000777248:22647-22895 -		G-CAGTAATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTGA------GTC-G-TT------------------------GCACTCCCAC-----------------GAATTCAGAATAAAGCC----------------------TC-----------------CAT------AATCCG----GTTC-----CAGCCCATCTAATCCCTGCCTGACGGAGGTGCTCAGGACCTGTGCAAACATCCAGTCGCTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTTTTCTGAGCGGTCCCAAC---AACGGTCGCAAGATGCTCTCGCCGAAT---CCGTACTCCTT-----------
droFic1	scf7180000452523:273881-274135 +		G-CAGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAAAGG---GA---------------------------AACCAGCAACCAA-----------------AATTATATCAAA----------------------------T---------------AAGATATCCTCATCCCA----CATT-----TAGTCCATCGAATCCCGGCCTGACGGAGGTGCTCAGGAACTGTGCGAACATCCAGTCGCTGGAGAGCTTG------------------AA---CTTCGAATACAACGACGTTTTCCTAACCGGACCCAGC---GAGG---GCAAGATGATCTCGCCGAAC---CCGTACTCCTTCAGC------G
droKik1	scf7180000302313:302361-302609 +		G---------TCTGGGACATCCACCTCCGAAC---GCTCAAACTCCGAAGACAGGTGA------GAG-G-TTG-----TC---C----AT---CATACCCACCCTA-----------------AAATATCATCAGTAATC----------------------AG-----------------TTC------GTCCGC----GTGC-----CAGCCCATCGAATCTCTGCCTGACGGAGGTGCTCAGGACTTGTGCCAACATACAGTCGCTGGAGAGTCTC------------------AA---CTACGAGTACAACGACGTCTACCTGACTGGACCCAGT---GAGG---GCAAGATGATATCTCCGAAT---CCGTAC---TTCAGC------G
droAna3	scaffold_13340:7082960-7083230 -		G-CCGTTATGTCCGGGACATCGAACTCTGAAC---GCTCCAACTCCGAAGACAGGTAA------GAA-G-CTT-----CAATAC----G---------------GAAAAATCGGAAAAAATAAG----------------TTCCCTCAATGACTTCTCAAT---------------AT---AAT--------ACCC----GGTG-----CAGTCCATCCAATCCCTGCCTGACGGAGGTACTGCGAAACTGTGCTAACATCCAATCTCTGGAAAGTCTA------------------AA---CTACGAGTACAACGACGTTTACTTCAACGGTTCCAGT---GAGG---GAAAGATGATCTCACCGAAT---CCCTACTCCTTCAGT------G
droBip1	scf7180000396708:1770726-1770983 +		G-CCGTTATGTCCGGGACATCGAACTCTGAAC---GCTCCAACTCCGAAGACAGGTGA------GAC-G-CT-----TGGATTC------CTG-----G------------AGA---AAAT---AAAG------------TACTTTCAAAG---T-------AT---------------AAAAT------AT--CC----GGTG-----CAGTCCATCCAATCCCTGCCTGACGGAGGTACTGCGGAACTGTGCAAACATCCAATCCCTGGAAAGTCTA------------------AA---CTACGAGTACAACGACGTTTATTTCAACGGTTCTAGT---GAAG---GCAAGATGATCTCACCGAAT---CCTTACTCCTTCAGT------G
dp5	2:17825432-17825685 +		A-TAGTTATGTCTCGAGCAGCGACATCTGAAC---GGTCCAACTCTGAAGACAGGTAG------GTG-G-TCC-----CTGCGC----GTCTA-----G------------CGAAGCAAATGAT-TTCTG----------TA------------TCTTGGT---------------CTC---G-------------CACCC---TGAAGTAGCAACGCACATACTTGCTTGACCGAGGTGCTCAGGAACTGTGCCGATATTCAATCGCTGGAAAGCTTG-AGCCTGCCCCAC-----AG---CTACGACTACTAC---------------------AAC---GAGC---GGAAGATGATTTCGCCAAAC---CCGTATTCTTTCAGC------G
droPer2	scaffold_0:11684434-11684687 +		A-TAGTTATGTCTCGAGCAGCGACATCTGAAC---GGTCCAACTCTGAAGACAGGTAG------GTG-G-TCC-----CTGCAC----GTCTA-----G------------CGAAGCAAATGAT-TTCTG----------TA------------TCTTGGT---------------CTC---A-------------CACCC---TGAAGTAGCAACGCACATACTTGCTTGACCGAGGTGCTCCGGAACTGTGCCGATATTCAATCGCTAGAAAGCTTG-AGCCTGCCCCAC-----AG---CTACGACTACTAC---------------------AAC---GAGC---GGAAGATGATTTCGCCAAAC---CCGTATTCTTTCAGC------G
droWil2	scf2_1100000004943:16397705-16397963 +		G----TTATGTCGGAGGCATCGACATCGGGCTCTGGTTCTCATTCCGAAGACAGGTAG------GTC-A-TT-------------------------GCTCTTCAG-----GGTAACAA------TTTTG----------TC------------TCATCA---T-----------------CTC------ATCATA----ATCA-----CAGTAATGCGAATAGCTCTTTGAACGCTGTCCTAAAGTCCTGTGCCAAAATTCAATCACTGGAGAGCCTT-GGACCGCCCAT-----AGA---CTACGACTATAACGACGTCTATTTGG------CTAGC---GAGG---CCAAGATGATTTCACCGAAT---CCGTACTCCTTCAGT------G
droVir3	scaffold_12855:237486-237770 -	dvi_3260	G-CAGGCATGTCTGAAGAATCAGCGTCTGCCC---GTTCGCACTCAGAAGATCTTTCTAGGTATCTG-TCTATTACTTGTAATG---------GTTTAGAGTG-GA----------------AG-TTATA----------TT------------TATTGATCGT-----------------TAT------G--------CCTTA---CACAGCAA---CAATTGTCGCTTGCAAGAGGTGCTTAAGACGTGTGCTAACATTCAGTCGCTGGAGTCGCTGTATCCATGCCCTCCGCTAGA---CAACGACTTTAACGACGTGTACATTTCGTCTACTACA---GGGG---AGAAGATGATCACTCCCAAT---CCATGCTCGTTCAGT------G
droMoj3	scaffold_6540:2113272-2113548 +		T-CAGTAATGTCCGAAACATCGACGTCTGGCC---GCTCTCATTCCGAAGATCTTTCTAGGTAGCTA-T-TATCACTTCCATTC----G--TT----GAACT-----------------ATAAT-CTCAA----------TT------------TATAGGTCGT------------CCC---A-------------TATGC---TCCGCCAGTAA---CAATTGTCGCCTGCAAGAGATCTTGAAGGCTTGTGCCAACATTCAGTCACTGGAATCGCTGTCTCCGTACGCTCAGCTGGA---CAACGACATAAACGACA---------CGTACGCCACG---GCAG---AGAATATGATTACTCCCGAT---CCGTACTCATTCAAT------G
droGri2	scaffold_14906:13036882-13037176 +		TTCCAGTATGTCTGAAGAATCAACATCTGGCC---GTTCGCACTCCGAGGATCTATCTAGGTAGCTA-A-TCTCACT--CACTCGCTCA-CTG-----G------A------AGAGCC-----A-CTCAA----------TT------------TATAGGTCGTTCTTTTGACTCGCTC---G-------------CACTC---GTACACAGTAA---CAATTATCGCTTGGAAGAGGTGCTGAAGACTTGTGCGAACATCCAGTCAATGGAATCGCTC------------------ACTGTTAACGACTACAATGATGTTTACATCGCTACACCTGCAGAAGAAGGAGAGAAGATGATCTCGTCCAGTACTCGCTACTCCTTCAGC------G

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

G-CCGTTATGTCTGCAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAA------TA---------------------------GATAGGCATCCAA-----------------AAATCCACGTTTTGGCC----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGCCCGTCGAATCCCTGCCTAACGGAGGTGCTCAGGAATTGTGCCAATATCCAGTCGCTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTCTGCTGACCGAACCCAAC---GAGG---GGAAGATGATTACGCCGAAT---CCGTACTCCTTTAGC------G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............TGCAACATCGACCTCTGAAC---G......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTCTGCTGACCGAACCCAAC---GAGG---GGA..........................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGTGCCAATATCCAGTCGCTGGAGAGCT.....................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CCTAACGGAGGTGCTCAGGAG..................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTG------------------AA---CTACGAATATAACGACGTC.........................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................AACGGAGGTGCTCAGGAA..................................................................................................................................................	18	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAG------TA---------------------------GATAGGCATCCAA-----------------A-ATCTATATTATGGCC----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGTCCGTCGAATACCTGCCTAACAGAGGTGCTCAGGAATTGTGCCAATATCCAGTCGTTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTCTGCTGACCGAACCCAAC---GAGG---GGAAGATGATTACGTCGAAT---CCGTACTCCTTTAGC------G	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............AACATCGACCTCTGAAC---GCTC...................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0
...............AACATCGACCTCTGAAC---GCT....................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	1	0	0	0

dm3

G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAG------TA---------------------------GATAGGCATTCAA-----------------AAATCCATGTAATGACC----------------------AA-----------------AAT------ATCCCG----CTTC-----CAGCCCGTTGAATCCCTGCCTAACGGAGGTCCTCAGGAATTGTGCCAACATTCAGTCGCTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTTTGCTGACCGAAGACAAC---GTGG---GGAAGATGATTACGCCGAAT---CCGTATTCCTTTAGT------G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................TATAACGACGTTTTGCTGACC................................................................	21	2	9.50	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTTTGCTGACCGAAGACAAC---G...................................................	21	2	7.50	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GTTTTGCTGACCGAAGACAAC---GTGG---GG...........................................	27	2	4.50	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AGGAATTGTGCCAACATTCA...................................................................................................................................	20	2	4.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................CATTCAGTCGCTGGAGAGCTT....................................................................................................................	21	2	4.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CGGAGGTCCTCAGGAATTGTG.............................................................................................................................................	21	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GACAAC---GTGG---GGAAGATGATTA.................................	22	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CCTCAGGAATTGTGCCAACA.......................................................................................................................................	20	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................ACAAC---GTGG---GGAAGATGA....................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AC---GCTCCAACTCCGAAGAC......................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CGTTATGTCTGGAACATC.....................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GACGTTTTGCTGACCGAAGAC..........................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAT-------A---------------------------CCCGGGCATCCGA-----------------AAATCAACGTAATGGTC----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGCCCATCGAATCCCTGCTTAACGGAGGTGCTCAGGAACTGTGCCAATATCCAGTCACTGGAGAGCTTG------------------AA---CTACGAATACAACGACGTTCTGTTGACCGAATCCAGC---GAGG---GGAAGATGATTACGCCGAAT---CCGTACTCCTTTAGC------G	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................C----------------------AT-----------------AAT------ATCCCG----CTTC-----CAGCC....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................ACTGGAGAGCTTG------------------AA---CTACGA......................................................................................	21	2	1.00	2	0	0	0	0	1	1	0
.......................................................................................................................................................................................................................................................................GTCACTGGAGAGCTTG------------------AA---CTA.........................................................................................	21	2	1.00	2	0	0	0	0	1	1	0
................ACATCGACCTCTGAAC---GCTCC..................................................................................................................................................................................................................................................................................................................................................................	21	3	0.67	2	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGG---GGAAGATGATTACGCCGA...........................	21	3	0.67	2	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................TAACGGAGGTGCTCAGGAACT................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................ATCCAGTCACTGGAGAGCTTG------------------.................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................CGGAGGTGCTCAGGAACTGTG.............................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................CTGCTTAACGGAGGTGCTCAGG....................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................TATCCAGTCACTGGAGAGCTTG------------------A................................................................................................	23	2	0.50	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................TTAACGGAGGTGCTCAGGAAC.................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................TCGAATCCCTGCTTAACGGAG.............................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................GGAGGTGCTCAGGAACTGTGC............................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTAACGGAGGTGCTCAGGAA..................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TACGCCGAAT---CCGTACTCCTT...........	21	3	0.33	1	1	0	0	0	0	0	0
.............................AAC---GCTCCAACTCCGAAGACAGCC..................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	1	0	0
..........................CTGAAC---GCTCCAACTCCGA..........................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATGATTACGCCGAAT---CCGTAC................	21	3	0.33	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................AGAGCTTG------------------AA---CTACGAATACAACGACGTT.........................................................................	29	3	0.33	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................G------------------AA---CTACGAATACAACGACGT..........................................................................	21	3	0.33	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................ACCGAATCCAGC---GAGG---GGAAG........................................	21	3	0.33	1	0	0	0	0	1	0	0
.................CATCGACCTCTGAAC---GCTCCA.................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTG------------------AA---CTACGAATACAACGT.............................................................................	20	3	0.33	1	0	0	0	0	1	0	0
..............GAACATCGACCTCTGAAC---GCT....................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0
.....................GACCTCTGAAC---GCTCCAACTC.............................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0
..............GAACATCGACCTCTGAAC---GCTT...................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................CGAATACAACGACGTTCTGTT....................................................................	21	3	0.33	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................A---CTACGAATACAACGACGTTC........................................................................	21	3	0.33	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATCCAGC---GAGG---GGAAGATGA....................................	21	3	0.33	1	0	0	0	0	1	0	0
................................................AGACAGGTAT-------A---------------------------CCCGGGCATC...................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................TACGAATACAACGACGTTCTG......................................................................	21	3	0.33	1	1	0	0	0	0	0	0
......................ACCTCTGAAC---GCTCCAACTCC............................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................ACGTTCTGTTGACCGAATCCAG........................................................	22	3	0.33	1	1	0	0	0	0	0	0
.........................TCTGAAC---GCTCCAACTCCGAAGACA.....................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAAGATGATTACGCCGAAT---CC....................	21	3	0.33	1	0	0	0	0	0	1	0
................ACATCGACCTCTGAAC---GCTCCAACTCC............................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0
..........................CTGAAC---GCTCCAACTCCGAAG........................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	1	0	0	0	0	0	0

droYak3

G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAGGACAGGTAG------TA---------------------------GATGGGCATCCAA-----------------AAATCCACGGCATGGTC----------------------AT-----------------AAT------ATTCCG----CTTG-----CAGCCCATCGAATCCCTGCCTAACGGAGGTGCTCAGGAACTGTGCCAATATCCAGTCCCTGGAGAGCTTG------------------AA---CTACGAATACAACGACGTGTTGTTAAGCGAATCCAAC---GAGG---GGAAGATGATTACGCCGAAT---CCGTACTCCTTTAGC------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................CGACGTGTTGTTAAGCGAATCCAAC---GAG.................................................	28	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10
.....................................................................................................................................................................................................................................TAACGGAGGTGCTCAGGAACT................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................G------------------AA---CTACGAATACAACGACGT..........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...CGTTATGTCTGGAACATCGA...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAAGATGATTACGCCGAAT---C.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................CTCTGAAC---GCTCCAACTCCGA..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CTGCCTAACGGAGGTGCTCAGG....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........TCTGGAACATCGACCTCTGA............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................A---CTACGAATACAACGACGTGT........................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................CTGCCTAACGGAGGTGCTCAG.....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................ATCCAGTCCCTGGAGAGCT.....................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................A---CTACGAATACAACGACGT..........................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AACGACGTGTTGTTAAGCGAA.............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................ATCGACCTCTGAAC---GCTCCAACT..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................TCGACCTCTGAAC---GCTCCAA................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................C---GCTCCAACTCCGAGGACAGCC..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TCGAATCCCTGCCTAACGGAG.............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

G-GCGTTATGTCTGGAACATCGACATCTGAAC---GCTCCAACTCTGAAGACAGGTGA------GAT---CA---------------------GCTGAGTAGTCAA-----------------AGATCCAGATTATAATC----------------------CT------A----------AAT------GTTCCC----ATTC-----CAGTCCATCGAATCCCGGCCTGACGGAGGTGCTCAGAAATTGTGCGAATATCCAGTCACTGGAAAGCCTG------------------AA---CTACGAATACAACGACGTCTTCCTCACCGAATCCAGC---GAGG---GAAAGATGATAACACCGAAT---CCATACTCTTTCAGC------G	Size	Hit Count	Total Norm	Total
No Reads

droBia1

G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAGGACAGGTGA------GAG---TC---------------------GCGGGGCACCAAA-----------------GAGTATAGTTAACAATG----------------------TT-----------------AAT------ATCCCC----ATGG-----CAGCCCATTGAATCCGTGCCTGACGGAGGTGCTCAGGACCTGTGCCAACATCCAGTCGATAGAGAGCTTG------------------AA---CTACGAGTACAACGACGTGTTCCTCACCGAATCCAGC---GAGGGAGGCAAAATGATAACGCCGAAT---CCGTACTCCTTCAGT------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G-CCGTTATGTCTGGAACATCGACCTCTGAAC---GTTCCAACTCCGAAGACAGGTGA------GACAC-TCT-----TT----------------GTGAGTCTAA-----------------AAATTCAGATAATAATC----------------------TT-----------------TAT------ATGGCT----ATTC-----CAGCCCATCGAATCCAGGCCTGACGGAGGTGCTCAGGAACTGTGCAAATATCCAGTCGGTAGAAAGCTTA------------------AA---CTACGAATATAACGACGTTTTCCTGACCGAATCCAAC---GAGG---GCAAGATGATAACCCCAAAT---CCATACTCCTTCAACCTTTCGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G-CAGTTATGTCTGGAACATCGACTTCTGAAC---GCTCCAACTCCGAAGACAGGTAA------GAC-G-TT------------------------GGACACCCAC-----------------GCTTCCAGAACAGAGCC----------------------TC-----------------CAT------ATCCCG----GTTC-----CAGCCCATCTAATCCCGGCCTGACGGAGGTGCTCAGGACCTGTGCAAACATTCAGTCGGTGGAGAGCTTG------------------AA---CTACGAATACAACGACGTTTTTCTGACCGGTCCCAGC---AACGGTAGCAAGATGCTTTCGCCGAAT---CCGTACTCCTT-----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

G-CAGTAATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTGA------GTC-G-TT------------------------GCACTCCCAC-----------------GAATTCAGAATAAAGCC----------------------TC-----------------CAT------AATCCG----GTTC-----CAGCCCATCTAATCCCTGCCTGACGGAGGTGCTCAGGACCTGTGCAAACATCCAGTCGCTGGAGAGCTTG------------------AA---CTACGAATATAACGACGTTTTTCTGAGCGGTCCCAAC---AACGGTCGCAAGATGCTCTCGCCGAAT---CCGTACTCCTT-----------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G-CAGTTATGTCTGGAACATCGACCTCTGAAC---GCTCCAACTCCGAAGACAGGTAAAGG---GA---------------------------AACCAGCAACCAA-----------------AATTATATCAAA----------------------------T---------------AAGATATCCTCATCCCA----CATT-----TAGTCCATCGAATCCCGGCCTGACGGAGGTGCTCAGGAACTGTGCGAACATCCAGTCGCTGGAGAGCTTG------------------AA---CTTCGAATACAACGACGTTTTCCTAACCGGACCCAGC---GAGG---GCAAGATGATCTCGCCGAAC---CCGTACTCCTTCAGC------G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G---------TCTGGGACATCCACCTCCGAAC---GCTCAAACTCCGAAGACAGGTGA------GAG-G-TTG-----TC---C----AT---CATACCCACCCTA-----------------AAATATCATCAGTAATC----------------------AG-----------------TTC------GTCCGC----GTGC-----CAGCCCATCGAATCTCTGCCTGACGGAGGTGCTCAGGACTTGTGCCAACATACAGTCGCTGGAGAGTCTC------------------AA---CTACGAGTACAACGACGTCTACCTGACTGGACCCAGT---GAGG---GCAAGATGATATCTCCGAAT---CCGTAC---TTCAGC------G	Size	Hit Count	Total Norm	Total
No Reads

droAna3

G-CCGTTATGTCCGGGACATCGAACTCTGAAC---GCTCCAACTCCGAAGACAGGTAA------GAA-G-CTT-----CAATAC----G---------------GAAAAATCGGAAAAAATAAG----------------TTCCCTCAATGACTTCTCAAT---------------AT---AAT--------ACCC----GGTG-----CAGTCCATCCAATCCCTGCCTGACGGAGGTACTGCGAAACTGTGCTAACATCCAATCTCTGGAAAGTCTA------------------AA---CTACGAGTACAACGACGTTTACTTCAACGGTTCCAGT---GAGG---GAAAGATGATCTCACCGAAT---CCCTACTCCTTCAGT------G	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................GTTCCAGT---GAGG---GAAAGATGATCTCACC.............................	28	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................CAGTCCATCCAATCCCTGCCTGAC.................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAGT---GAGG---GAAAGATGAA...................................	18	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................................................................................AGTCCATCCAATCCCTGCCTGACGGA..............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................CGAACTCTGAAC---GCTCCAACTCC............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droBip1

G-CCGTTATGTCCGGGACATCGAACTCTGAAC---GCTCCAACTCCGAAGACAGGTGA------GAC-G-CT-----TGGATTC------CTG-----G------------AGA---AAAT---AAAG------------TACTTTCAAAG---T-------AT---------------AAAAT------AT--CC----GGTG-----CAGTCCATCCAATCCCTGCCTGACGGAGGTACTGCGGAACTGTGCAAACATCCAATCCCTGGAAAGTCTA------------------AA---CTACGAGTACAACGACGTTTATTTCAACGGTTCTAGT---GAAG---GCAAGATGATCTCACCGAAT---CCTTACTCCTTCAGT------G	Size	Hit Count	Total Norm	Total
No Reads

dp5

A-TAGTTATGTCTCGAGCAGCGACATCTGAAC---GGTCCAACTCTGAAGACAGGTAG------GTG-G-TCC-----CTGCGC----GTCTA-----G------------CGAAGCAAATGAT-TTCTG----------TA------------TCTTGGT---------------CTC---G-------------CACCC---TGAAGTAGCAACGCACATACTTGCTTGACCGAGGTGCTCAGGAACTGTGCCGATATTCAATCGCTGGAAAGCTTG-AGCCTGCCCCAC-----AG---CTACGACTACTAC---------------------AAC---GAGC---GGAAGATGATTTCGCCAAAC---CCGTATTCTTTCAGC------G	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................CCCCAC-----AG---CTACGACTACTAC---------------------..........................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................CAACTCTGAAGACAGGTAG------GT........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................ACCC---TGAAGTAGCAACGCACATACT.........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

A-TAGTTATGTCTCGAGCAGCGACATCTGAAC---GGTCCAACTCTGAAGACAGGTAG------GTG-G-TCC-----CTGCAC----GTCTA-----G------------CGAAGCAAATGAT-TTCTG----------TA------------TCTTGGT---------------CTC---A-------------CACCC---TGAAGTAGCAACGCACATACTTGCTTGACCGAGGTGCTCCGGAACTGTGCCGATATTCAATCGCTAGAAAGCTTG-AGCCTGCCCCAC-----AG---CTACGACTACTAC---------------------AAC---GAGC---GGAAGATGATTTCGCCAAAC---CCGTATTCTTTCAGC------G	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................GAAC---GGTCCAACTCTGAAGAC......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droWil2

G----TTATGTCGGAGGCATCGACATCGGGCTCTGGTTCTCATTCCGAAGACAGGTAG------GTC-A-TT-------------------------GCTCTTCAG-----GGTAACAA------TTTTG----------TC------------TCATCA---T-----------------CTC------ATCATA----ATCA-----CAGTAATGCGAATAGCTCTTTGAACGCTGTCCTAAAGTCCTGTGCCAAAATTCAATCACTGGAGAGCCTT-GGACCGCCCAT-----AGA---CTACGACTATAACGACGTCTATTTGG------CTAGC---GAGG---CCAAGATGATTTCACCGAAT---CCGTACTCCTTCAGT------G	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................GCTCTTTGAACGCTGTCCT........................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
..............................................................................................................................................................................................................................AGCTCTTTGAACGCTGTCC.........................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................CACTGGAGAGCCTT-GGACCGC...........................................................................................................	21	1	1.00	1	1	0	0	0	0
............................GGCTCTGGTTCTCATTCCGAAG........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0

droVir3

G-CAGGCATGTCTGAAGAATCAGCGTCTGCCC---GTTCGCACTCAGAAGATCTTTCTAGGTATCTG-TCTATTACTTGTAATG---------GTTTAGAGTG-GA----------------AG-TTATA----------TT------------TATTGATCGT-----------------TAT------G--------CCTTA---CACAGCAA---CAATTGTCGCTTGCAAGAGGTGCTTAAGACGTGTGCTAACATTCAGTCGCTGGAGTCGCTGTATCCATGCCCTCCGCTAGA---CAACGACTTTAACGACGTGTACATTTCGTCTACTACA---GGGG---AGAAGATGATCACTCCCAAT---CCATGCTCGTTCAGT------G	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................GCTAGA---CAACGACTTTAACGACGTGTA.......................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCATGTCTGAAGAATCAG...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAGCGTCTGCCC---GTTCGCACTCAG...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CTACTACA---GGGG---AGAAGATGATCA.................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATGCCCTCCGCTAGA---CAAC........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................AATCAGCGTCTGCCC---GTTCGC.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CTAACATTCAGTCGCTGGAGT........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GTATCCATGCCCTCCGCTAGA---CAAC........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-CAGTAATGTCCGAAACATCGACGTCTGGCC---GCTCTCATTCCGAAGATCTTTCTAGGTAGCTA-T-TATCACTTCCATTC----G--TT----GAACT-----------------ATAAT-CTCAA----------TT------------TATAGGTCGT------------CCC---A-------------TATGC---TCCGCCAGTAA---CAATTGTCGCCTGCAAGAGATCTTGAAGGCTTGTGCCAACATTCAGTCACTGGAATCGCTGTCTCCGTACGCTCAGCTGGA---CAACGACATAAACGACA---------CGTACGCCACG---GCAG---AGAATATGATTACTCCCGAT---CCGTACTCATTCAAT------G	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................GCAAGAGATCTTGAAGGCTTG...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................TCGACGTCTGGCC---GCTCTCATTC.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................TCCGTACGCTCAGCTGGA---CAAC........................................................................................	22	1	1.00	1	0	0	0	0	1	0

droGri2

TTCCAGTATGTCTGAAGAATCAACATCTGGCC---GTTCGCACTCCGAGGATCTATCTAGGTAGCTA-A-TCTCACT--CACTCGCTCA-CTG-----G------A------AGAGCC-----A-CTCAA----------TT------------TATAGGTCGTTCTTTTGACTCGCTC---G-------------CACTC---GTACACAGTAA---CAATTATCGCTTGGAAGAGGTGCTGAAGACTTGTGCGAACATCCAGTCAATGGAATCGCTC------------------ACTGTTAACGACTACAATGATGTTTACATCGCTACACCTGCAGAAGAAGGAGAGAAGATGATCTCGTCCAGTACTCGCTACTCCTTCAGC------G	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................................................GAATCGCTC------------------ACTGTTAACGACT....................................................................................	22	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................AAGGAGAGAAGATGATCTCGTC.............................	22	1	1.00	1	0	1
........................................................................................................................................................................................................................................................................................................................AATGATGTTTACATCGCTACACCTGCA.......................................................	27	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................GCAGAAGAAGGAGAGAAGATGATC..................................	24	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................CCTGCAGAAGAAGGAGAGAAGATG.....................................	24	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................................ACCTGCAGAAGAAGGAGAGAAGAT......................................	24	1	1.00	1	0	1
.............................................................................................................................................................................................................................TTATCGCTTGGAAGAGGTGCTG.......................................................................................................................................................	22	1	1.00	1	0	1
...............................................................................................................................................................................................................................ATCGCTTGGAAGAGGTGCTG.......................................................................................................................................................	20	1	1.00	1	0	1
...................................................................................................................................................................................................................................................................................................................................CATCGCTACACCTGCAGAAGAAGGAGA............................................	27	1	1.00	1	1	0
..................................................................................................................................................................................................................................GCTTGGAAGAGGTGCTGAA.....................................................................................................................................................	19	1	1.00	1	0	1
......................................................................................................................................................................................................................A---CAATTATCGCTTGGAAGAG.............................................................................................................................................................	20	1	1.00	1	0	1
...................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAGAGAAGATGATCTCG...............................	24	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................................CCTGCAGAAGAAGGAGAGAAG........................................	21	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAGAGAAGATGATCTCGT..............................	25	1	1.00	1	0	1
...................................................................................................................................................................................................................................................................................................................................................GAAGAAGGAGAGAAGATGATCTCGTCCA...........................	28	1	1.00	1	0	1
.........GTCTGAAGAATCAACATCTGGCC---G......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0

dsi_27604

3r:8441863-8442012 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-29.1	-29.0	-29.0