ID:

dsi_27581

 Coordinate:

2l:2763113-2763262 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.6 -20.5

Flybase annnotation

exon [2l_2762971_2763112_-]; CDS [2l_2762971_2763112_-]; intron [2l_2763113_2765282_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTAATATTTGAGCAGCAAACAACTGAAATGTGTTCCGACCAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAGAGGCAACGGAACGAGCCATGAAATACGAATATAAGCTGGTAGACCCGAAGAACTTGGCCAAGAAAAACCATCAATAAACCATTAGTAGTCGGTCACAAAACTAATTTGCCTTCCGCCTTTTCAGCTGGCCACGGATGAGAAGCCACCGCGGCGGAAAAGCAGTGGATCGCCAAA
**************************************************.((((........)))).....((.(((((((....((.(((..................))).)).((((.((......(((.....................))).......))))))...........)))))))..))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
........................................................................................................................................................................................................................AGCCCCCGCGGCGGA................... 15 1 1 2.00 2 0 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................TGCTGGCCACGGATGAGAAGC............................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0
..................................................................................................ATACGAATATAAGCTGGTAGACC................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................ACGGATGAGAAGCCACCGCGGCGGAAA................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........TGAGCAGCAAACAACTGAAATGTGTTC...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................CAACGGAACGAGCCATGAAATACGAA................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CCACGGATGAGAAGCCACCGCGGCG..................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................CAGCCATGAAATACGAATATAAGCTG........................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TCCGCCTTTTCAGCTGGCCACGGATGAGA.................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................AGCCACCGCGGCGGAAAA................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................CAAGCCCCCGCGGCGGA................... 17 2 10 0.20 2 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................GTGAAGCCCCCGCGGCGGAC.................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
......................................................................................................GAATATCAGCTGGTA..................................................................................................................................... 15 1 16 0.13 2 0 0 0 0 0 0 0 0 2
......................................................................................................................................................................................................................CAAGCCCCCGCGGCGG.................... 16 2 20 0.10 2 0 1 1 0 0 0 0 0 0

Anti-sense strand reads

CAATTATAAACTCGTCGTTTGTTGACTTTACACAAGGCTGGTTCTTTGGCCGGTACGTATTTACACCTCGGTCGTCTCCGTTGCCTTGCTCGGTACTTTATGCTTATATTCGACCATCTGGGCTTCTTGAACCGGTTCTTTTTGGTAGTTATTTGGTAATCATCAGCCAGTGTTTTGATTAAACGGAAGGCGGAAAAGTCGACCGGTGCCTACTCTTCGGTGGCGCCGCCTTTTCGTCACCTAGCGGTTT
**************************************************.((((........)))).....((.(((((((....((.(((..................))).)).((((.((......(((.....................))).......))))))...........)))))))..))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M024
male body		 SRR618934
dsim w501 ovaries
..............................................................................................................................................................................................................................GCGCCGCCTTTTCGTCACCTAGC..... 23 0 1 1.00 1 0 1 0 0
...................................................................................................................................CTGGCTCTTTTTGGTAGTCAT.................................................................................................. 21 3 1 1.00 1 1 0 0 0
.......................GACTTTACAGAAGGC.................................................................................................................................................................................................................... 15 1 9 0.22 2 2 0 0 0
.........................................................................................................................................CTATTTGGTAGTCAATTGGT............................................................................................. 20 3 7 0.14 1 0 0 1 0
.......................................................................................................................................................................................................................................TTTAGTCACCTAGCG.... 15 1 11 0.09 1 0 0 0 1
.............................................................TACCCCTCGGGCGTCTC............................................................................................................................................................................ 17 2 14 0.07 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:2763063-2763312 - dsi_27581 G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CGAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAAAA--CCATCAATAAACCA-------------------------------------------------------TT--AGTA-------------------------GTCGGTC---------ACAAAACTAATT-------------------------------TGCC---------TTCCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCGCCAAA
droSec2 scaffold_5:1041654-1041903 - G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CGAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAAAA--CCATCAATAAACCA-------------------------------------------------------TC--AGTA-------------------------GTCGGTC---------AAAAAACTAATT-------------------------------TGTC---------TTCCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCGCCAAA
dm3 chr2L:2882784-2883033 - G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAG---AGGCAACG--------------GAA-CGAACCATGAAATACGAATATAAGCTGGTAGACC-CGATGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAAAACACCATCAAAT---------------------------------------------------------AACTG--AGTA-------------------------GTCGGTC---------ACAAAACTAATT-------------------------------TGTC---------TTTCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGTAGCGGATCACCAAA
droEre2 scaffold_4929:2929957-2930204 - G------------TTAATATTTGAGC--AG-----CAAACAACCG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGTACCATCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-GCAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAACT--GCATCAAAT---------------------------------------------------------AACTC--ACTT-------------------------GTCGGTA---------CCAAAACTAATT-------------------------------TGTT---------TGTCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCACCAAA
droYak3 2L:2877625-2877873 - G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGCGGTACCACCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CGAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAACT--CCATCAAAT---------------------------------------------------------AACCC-CATTC-------------------------TCCGGTC---------GCAAAACTAATT-------------------------------TGTT---------TTTCG------------CA--CTTTCAGCTGGCCACGGACGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCACCAAA
droEug1 scf7180000409554:3223261-3223503 + G------------TTAATATTTGAGG--AG-----CAAACAACTG------------AA-ATGTGTTCCAAC---AAAAAAACCGGCTATGCATAAATGTTGTGGTAGCAG---AGGGAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CAAATA-------------------------------ACTTA---------------------------------------------------------G-TC---------TGCGATAT--CTATTAAAT---------------------------------------------------------AACTC--ATTT-------------------------CTCAG-----------CCAAGTCTAACTC-------------------------------ATG---------T---A------------AA--TTTTCAGCTGGCCACGGACGAGAAACCGCCTCGG---------CGGAAAAGCAGTGGATCCCCAAA
droBia1 scf7180000302188:1904764-1905010 - G------------TTCATATTTGCAG--AG-----CCAACAGCAG------------AA-ATGTGTTTCAAC---AAAGAAACCGGCTATGCATAAATGTTGCGGCACCGA---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-AAGAGA-----------------------AAA-----ACTAG---------------------------------------------------------A-CC---------A-----AT--CCATTAAGT---------------------------------------------------------AATCC--ATTT-------------------------TTAGA-----------CCAGAACTAATC--------------------------------AAT---------TTTCG--TTA------CAC--CTTCCAGCTGGCCACGGACGAGAAGCCGCCGCGG---------CGGAAAAGCAGCGGTTCACCCAG
droTak1 scf7180000412794:41830-42078 + G------------TTAAAATTGGAAA--AG-----CAAACAACTG------------AA-ATGTGTTCCAAG---CAAGAGACCGGCTATGCATAAATGCTGTGGCACCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-GAAAA---------------------------TGGAAACTAG---------------------------------------------------------A-GCAAACAACCCAAA--AAA--CTATTAAAT---------------------------------------------------------AACTC--ACTT----------------------------------------------ACTAATT--------------------------------AAT---------TTTCC---TA------TAT--TTTCCAGCTGGCCACGGATGAGAAGCCGCCGCGG---------CGGAAAAGCAGTGGATCCCCTAA
droEle1 scf7180000491046:1557911-1558158 - G------------TTAATATTTAAAG--AG-----CAAACAACTG------------AA-ATGTGTTTCAAC---CAAGTCACCGGCAATGCATAAATGTTGTGGCATAGC---AGGCAACG--------------AAA-CGAGCCATGAAATACGAATATAAACTGGTAGACCACAAATA-------------------------------TTTTA---------------------------------------------------------G-CC---------AACAATATCACTA-AAAAT---------------------------------------------------------ACTTC--ATTC-------------------------TCCAA-----------CCGAGACTAATT--------------------------------GAA---------TGTCA-----------CAT--GTTTCAGCTGGCCACGGATGAGAAGCCGCCGCGG---------CGGAAAAGCAGTGGATCCCCAAA
droRho1 scf7180000779483:501333-501579 - G------------TTAATATTTGAAG--AG-----CAAACAACTG------------AA-ATGTGTTTCAAC---CAAGAAGCCGGCAATGCATAAAAGTTGTGGTATTGC---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CCA-TA-------------------------------TCTAT---------------------------------------------------------G-CC---------AAAAATATCACTA-TAAAT---------------------------------------------------------AACCT--ACTT-------------------------TCCGA-----------CCGAGACTAATT--------------------------------GAT---------TTACG------------CATTTTTTTAGCTGGCCACGGATGAGAAACCGCCGCGG---------CGGAAAAGCAGTGGTTCCCCAAA
droFic1 scf7180000453924:856278-856522 - G------------TTAATATTTGAGG--AG-----CAAACAACTG------------AA-ATGTGTTCCAAC---CAAGAGACCGGCAATGCATAAACGTGGTGGCAGCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CAAATA-------------------------------GCCAA---------------------------------------------------------G-CC---------GACAATAT--CTATTAAAT---------------------------------------------------------AACCG--ATTT-------------------------CTCAA-----------CCGAGACTAATG--------------------------------ATT---------TTTCG------------AA--CTTTCAGCTGGCCACGGATGAGAAACCGCCGCGG---------AGGAAAAACAGCGGTTCGCCAAA
droKik1 scf7180000302468:1248221-1248493 - G------------TTAATATTTAAAGAGAGCCAGCCAAACAGCTG------------AA-ATGTGTTGCTCCGCACGAGTCCCGAGTTTTGCATAAATGTTGTGGCTGAGC---AGGCAACGGGAATCTCCCCGAGAAGTTGAGCGATGAAATACGAATATAAGCTGGTAGAGA-TCT--------------------------------------A---------------------------------------------------------A-CC---------AAA--AAG--CTATTAACT-ACATTTAT------------------------------------------------GACTAAG----------------------GTATACAGTTAG------------TTAAACTAATC-------------------------------CA-A---------TGTTC------------TA--TCTGCAGCTGGCCACCGATGAAAAGCCGCTGCGG---------CGGAAAAACAGCGGCTCCCCGAA
droAna3 scaffold_12916:744401-744723 - GGGCGGAAGGAAGCAAATATTTGAAAAGAGCCAAAGAAACAGCGG------------AACCTGTGTTGGGGC---CACCTCAGCAGTTATGCATAAATGTTGCGACCCCAA---AACGAACT------------------GGAGCCATGAAATACGAATATAAGCTGGTAGAAA-CACGTCTATTTTAAGTTCCATGTTTGCAAAGCTGGAA-----ATTCCACACACGTTGTCATTTAT-CATAAATATGTTTAGTTTTTAAGTTATTTCTTAGTCC---------CAAAATAGGGCT----------------------------------------------------------------------------------------------------------------------AAAACTCCTT---------------------------------CC---------TACGG------------CC--ATTTCAGCTTGCCACCGACGAGAAGCCGCCCAGA---------CGAAAAAGCAGCGGATCCCCCAA
droBip1 scf7180000396554:1525092-1525292 + -----------------------------------------------------------------------------------CAGTTATGCATAAATATTGTGACC-CGA---AAACAAAG----------------T-CGAGCCATGAAATACGAATATAAGCTGGTAGAGA-AACATT---TTTAAGTTCGATATTTGCAAAGCTGGAT-----ATTTTATA-----------------------------------------------------------------------------AATATATTA-------------------------------------------------------TT-------------------------------------------------AAAATTCTAT---------------------------------------------TCTTTATTA-------AA--ATTCCAGTTGGCCACCGATGAGAAGCCGCCACGA---------CGAAAAGGCAGCGCTTCTCCCAA
dp5 4_group4:4313632-4313930 - G------------CTAATATTTAAAACGGG-----CAAACACTTG------------AA-ATGTGTCTAAGC---GAAAGCACCAGTTATGCATAATAATTGCGGCACAGCGACGGGCAGCGACAAACGCAAC--GAAACCGAGCAATGAAATACGAATATAAGCTGGTAGAAA-CCCATATACTA--------------TGCAACT-----A--------------------------------------------------------------------------------AT--CAATTAAA------------------------------------------------------------------------------------------------------------ACATAATTCTAAATCATGTATTTGATCGAACCTACTCTAACCGGTTAAC------------TTTATTCCAATCCCCC--GATTTAGCTGGCTACGGATGATAAACCGTCACAGGGCAACCGCCGGAAAGGCAGCGGCTCCGTCAC
droPer2 scaffold_10:3355722-3356033 - G------------CTAATATTTAAAACGGG-----CAAACACTTG------------AA-ATGTGTCTAAGC---GAAAGCACCAGTTATGCATAATAATTGCGGCACAGCGACGGGCAGCGACAAACGCAAC--GAAACCGAGCAATGAAATACGAATATAAGCTGGTAGAAA-CCCATATACTA-----------------------------------TGCA-------------------------------------------------------------------------------------------------------------------------------------------ACTATG----------------------CTATGCAACTAATCAATTAAAACATAATTCTAAATGATGTATTTGATCGAACCTACTCTAACCGGTTAAC------------TTTATTCCAATCCCCC--GATTTAGCTGGCTACGGATGATAAACCGTCACAGGGCAACCGCCGGAAAGGCAGCGGCTCCGTCAC
droWil2 scf2_1100000004884:697181-697320 - --------------------------------------------------------------------------------------------------------------------------------------------------ATGAAATACGACTACAAGCTGGTAGAAA-ATATCA-------------------------------TGAAA---------------------------------------------------------A-CA---------AACAAACT--ATACATAAT---------------------------------------------------------ATTGA-C----------------------ATTGAC-----------------ACGTTGT-TATT-------------------------------TGAT---------TATT-------------TT--TATACAGTTGGCAACTGATGATAAACCGGCAGCGG---------GGAATCGCCG---------TAA
droVir3 scaffold_12723:4255404-4255637 - G------------CAAACAATTGACG----------AAGCTGCCA------------GC-ATGTGTTTTAAG---GAAAATGCTGGTTATTTATAGAT--------AGCAA---AAGCAGC----------------------GCAATGAGATACGAATACAAGCTGGTAGACT-GTCGTG---------C---------------------TCT--------------------------------------------------------------C----A----AGCAATAA--TTATTAAAT-ACATTTAAAAACGA------------------------------------------------------------------------------GCCAA------------CTATATTAATT--------------------------------GTG---------TT--------------CAT--TTTGCAGCTGGCCAGCGATGATAAAGTGACGCCGGCGAATCGACGCAAGGGCAGCGG--CGCCGGA
droMoj3 scaffold_6500:14416582-14416865 + A---------------AGACTTGAACTAAA-----CAAACAATTGAGGCAGCTGGCAAC-ATGTGTTTTAAG---GAAAATGCTGGTTATTTATAGA--------CAGCAA---ACGCA----------------------CAGACATGAGATACGAATACAAGCTGGTAAAGA-ATTTTA-------------------GAGAGAC-----ATTAAATTATACACATATATGTACATATGCATATGTATTT---------------------------------------------GTACATTTC---------------------------------------------------------ATTGA-C--T-------------------GTTGTC-----------------GTATA--------------------------------GTTGCTTAAT---------GTGT--TTTATATTGCCAT--GTTGCAGCTGGCCAGCGATGACAAATCATCGCAGCAAAATCG------ACGCAAGGGCAGCCCCAG
droGri2 scaffold_15252:3420561-3420867 + A------------------------G--TG-----CAAACAACTGACGCGGCAGCCAAA-ATGTGTTTCAAC---GAAAATGCTGCTTATTTATAGA--------CAGCAA---ACGAGC----------------------CGCAATGAGATACGAATACAAACTGGTAGAAC-GTTGCG---------CTCCTCATTAGCAAATA-----ATT-A---------------------------------------------------------A-CA---------AAAAAAAA--A---------------------CAGAAAACCAAAAACAGAATCACTTGAAAATTGTACAAATAAAAAACTA--TTTTACTAATTGTGTTATTATTT------CTCTT-----------TTGTTAT---------------------------------------TATTATTGTTTTCTT-----------TAT--TATGCAGCTGGCTAGCGATGATAAATTGCCGCAGGCAAATCGCCGCAAGAACAGCGG------CAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CGAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAAAA--CCATCAATAAACCA-------------------------------------------------------TT--AGTA-------------------------GTCGGTC---------ACAAAACTAATT-------------------------------TGCC---------TTCCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCGCCAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................ATACGAATATAAGCTGGTAGACC-...............................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGATGAGAAGCCACCGCGG---------CGGAAA.................2711.00100000001000000000
.....................TGAGC--AG-----CAAACAACTG------------AA-ATGTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
.....................................................................................................................CAACG--------------GAA-CGAGCCATGAAATACGAA................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGATGAGAAGCCACCGCGG---------CG.....................2511.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCG------------CC--TTTTCAGCTGGCCACGGATGAGA...........................................2911.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCGG---------CGGAAAA................1811.00100001000000000000
droSec2
G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CGAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAAAA--CCATCAATAAACCA-------------------------------------------------------TC--AGTA-------------------------GTCGGTC---------AAAAAACTAATT-------------------------------TGTC---------TTCCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCGCCAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCCACCGCGG---------CGGAAAAGCAGT...........2711.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGCGG---------CGGAAAAGCAGTG..........2211.0010100
..................ATTTGAGC--AG-----CAAACAACTG------------AA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCACCGCGG---------CGGAAAAGCAGTGG.........2711.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCACCGCGG---------CGGAAAAGCAGTG..........2511.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCCACCGCGG---------CGGAAAAGC..............2411.0010010
...............................................................................................AATGTGGAGCCAGCAG---AGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............................................................................................ATAAATGTGGAGCCAGCAG---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGCAGT...........2011.0010010
.......................................................................................CATGCATAAATGTGGAGCCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGAGCCAGCAG---AGGCAACG--------------GAA-CGAACCATGAAATACGAATATAAGCTGGTAGACC-CGATGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAAAACACCATCAAAT---------------------------------------------------------AACTG--AGTA-------------------------GTCGGTC---------ACAAAACTAATT-------------------------------TGTC---------TTTCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGTAGCGGATCACCAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CC--TTTTCAGCTGGCCACGGA................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGAAGCCACCGCGG---------CG.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000
.............................................................TGTGTTCCGAC---CAAGAAACCGGCCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCGG---------CGGAAAAGTAGC...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................CAACTG------------AA-ATGTGTTCCGAC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GCTGGTAGACC-CGATGA-------------------------------ACTTG---------------------------------------------------------G-CC---------A..............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTAGCGGATCACCA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGCGG---------CGGAAAAGT..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCACGGATGAGAAGCCACCG...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGCGGATCACCAAA1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................CTGGTAGACC-CGATGA-------------------------------ACT.......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGATGAGAAGCCACCGC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACTAATT-------------------------------TGTC---------TTTCG------------C.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGTA.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................AAATGTGGAGCCAGCAG---AGGCAACG--------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCGG---------CGGAAAAGTAGCG..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................ATAAATGTGGAGCCAGCAG---AGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAT---------------------------------------------------------AACTG--AGTA-------------------------GTCGGT.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................AATACGAATATAAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................................................AATGTGGAGCCAGCAG---AGGCAACG--------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGTAGCG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCACGGATGAGAAG.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AACTG------------AA-ATGTGTTCCGAC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................AACG--------------GAA-CGAACCATGAAATACGAA................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCCACCGCGG---------CGGA...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
G------------TTAATATTTGAGC--AG-----CAAACAACCG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGTGGTACCATCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-GCAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAACT--GCATCAAAT---------------------------------------------------------AACTC--ACTT-------------------------GTCGGTA---------CCAAAACTAATT-------------------------------TGTT---------TGTCG------------CC--TTTTCAGCTGGCCACGGATGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCACCAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCGG---------CGGAAAAGCAGTG..........2415.0050000500
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGCAGTG..........2112.0021000100
............................................................ATGTGTTCCGAC---CAAGAAACCGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGAAGCCACCGCGG---------C......................1911.0011000000
......................GAGC--AG-----CAAACAACCG------------AA-ATGTGTTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
............................................................................................ATAAATGTGGTACCATCAG---AGGCAACG--------------......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..........................................................................................................ATCAG---AGGCAACG--------------GAA-CGAGCCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCCACCGCGG---------CGGAAAAGCAGTGG.........2911.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGCCACCGCGG---------CGGAAAAGC..............2611.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCACCGCGG---------CGGAAAAGCAGTG..........2511.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGATGAGAAGCCACCGCGG---------C......................2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGCGG---------CGGAAAAGCAGTGG.........2411.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACGGATGAGAAGCCACCGC..................................2311.0010100000
.....................................................................GAC---CAAGAAACCGGCCATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG---------CGGAAAAGCAGTGGATCA.....2211.0010001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGAAGCCACCGCGG---------CG.....................2111.0010000100
.....................................AACAACCG------------AA-ATGTGTTCCGAC---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCGG---------CGGAAAAGCA.............2111.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGG---------CGGAAAAGCAGTG..........1911.0010010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCACGGATGAGAAGC........................................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCGG---------CGGAAAAGC..............2011.0011000000
droYak3
G------------TTAATATTTGAGC--AG-----CAAACAACTG------------AA-ATGTGTTCCGAC---CAAGAAACCGGCCATGCATAAATGCGGTACCACCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CGAAGA-------------------------------ACTTG---------------------------------------------------------G-CC---------AAGAAACT--CCATCAAAT---------------------------------------------------------AACCC-CATTC-------------------------TCCGGTC---------GCAAAACTAATT-------------------------------TGTT---------TTTCG------------CA--CTTTCAGCTGGCCACGGACGAGAAGCCACCGCGG---------CGGAAAAGCAGTGGATCACCAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCACCGCGG---------CGGAAAAGCAGTG..........2515.00501000040000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCGG---------CGGAAAAGCAGTG..........2413.00300000030000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGCAGT...........2012.00200000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGCAGTG..........2112.00201000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGCGG---------CGGAAAAGCAGTG..........2311.00100000010000
......................................................................................................................AACG--------------GAA-CGAGCCATGAAATACGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCACCGCGG---------CGGAAAAGCAGTG..........2611.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGCGG---------CGGAAAAGCAGTG..........2211.00101000000000
..............................................................................................AAATGCGGTACCACCAG---AGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCCACCGCGG---------CGGAAAAGCAGTG..........2811.00100000010000
............................................................................................ATAAATGCGGTACCACCAG---AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGCCACCGCGG---------CGGA...................2011.00101000000000
.....................................................................................................................CAACG--------------GAA-CGAGCCATGAAATAC...................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................AAT---------------------------------------------------------AACCC-CATTC-------------------------TCCGGTC---------GCAAAA.........................................................................................................................................2611.00100000010000
.......................................................................................................ACCACCAG---AGGCAACG--------------GAA-C.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................................................................................................AACG--------------GAA-CGAGCCATGAAATAC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGCGG---------CGGAAAAGCAGTGG.........2411.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG---------CGGAAAAGCAGTGGATC......2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCGG---------CGGAAAAGCAGTGG.........2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACGGACGAGAAGC........................................1711.00100000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG---------CGGAAAAGCAGTGG.........1811.00100000100000
droEug1
G------------TTAATATTTGAGG--AG-----CAAACAACTG------------AA-ATGTGTTCCAAC---AAAAAAACCGGCTATGCATAAATGTTGTGGTAGCAG---AGGGAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CAAATA-------------------------------ACTTA---------------------------------------------------------G-TC---------TGCGATAT--CTATTAAAT---------------------------------------------------------AACTC--ATTT-------------------------CTCAG-----------CCAAGTCTAACTC-------------------------------ATG---------T---A------------AA--TTTTCAGCTGGCCACGGACGAGAAACCGCCTCGG---------CGGAAAAGCAGTGGATCCCCAAASizeHit CountTotal NormTotal
No Reads
droBia1
G------------TTCATATTTGCAG--AG-----CCAACAGCAG------------AA-ATGTGTTTCAAC---AAAGAAACCGGCTATGCATAAATGTTGCGGCACCGA---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-AAGAGA-----------------------AAA-----ACTAG---------------------------------------------------------A-CC---------A-----AT--CCATTAAGT---------------------------------------------------------AATCC--ATTT-------------------------TTAGA-----------CCAGAACTAATC--------------------------------AAT---------TTTCG--TTA------CAC--CTTCCAGCTGGCCACGGACGAGAAGCCGCCGCGG---------CGGAAAAGCAGCGGTTCACCCAGSizeHit CountTotal NormTotal
No Reads
droTak1
G------------TTAAAATTGGAAA--AG-----CAAACAACTG------------AA-ATGTGTTCCAAG---CAAGAGACCGGCTATGCATAAATGCTGTGGCACCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-GAAAA---------------------------TGGAAACTAG---------------------------------------------------------A-GCAAACAACCCAAA--AAA--CTATTAAAT---------------------------------------------------------AACTC--ACTT----------------------------------------------ACTAATT--------------------------------AAT---------TTTCC---TA------TAT--TTTCCAGCTGGCCACGGATGAGAAGCCGCCGCGG---------CGGAAAAGCAGTGGATCCCCTAASizeHit CountTotal NormTotal
No Reads
droEle1
G------------TTAATATTTAAAG--AG-----CAAACAACTG------------AA-ATGTGTTTCAAC---CAAGTCACCGGCAATGCATAAATGTTGTGGCATAGC---AGGCAACG--------------AAA-CGAGCCATGAAATACGAATATAAACTGGTAGACCACAAATA-------------------------------TTTTA---------------------------------------------------------G-CC---------AACAATATCACTA-AAAAT---------------------------------------------------------ACTTC--ATTC-------------------------TCCAA-----------CCGAGACTAATT--------------------------------GAA---------TGTCA-----------CAT--GTTTCAGCTGGCCACGGATGAGAAGCCGCCGCGG---------CGGAAAAGCAGTGGATCCCCAAASizeHit CountTotal NormTotal
No Reads
droRho1
G------------TTAATATTTGAAG--AG-----CAAACAACTG------------AA-ATGTGTTTCAAC---CAAGAAGCCGGCAATGCATAAAAGTTGTGGTATTGC---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CCA-TA-------------------------------TCTAT---------------------------------------------------------G-CC---------AAAAATATCACTA-TAAAT---------------------------------------------------------AACCT--ACTT-------------------------TCCGA-----------CCGAGACTAATT--------------------------------GAT---------TTACG------------CATTTTTTTAGCTGGCCACGGATGAGAAACCGCCGCGG---------CGGAAAAGCAGTGGTTCCCCAAASizeHit CountTotal NormTotal
No Reads
droFic1
G------------TTAATATTTGAGG--AG-----CAAACAACTG------------AA-ATGTGTTCCAAC---CAAGAGACCGGCAATGCATAAACGTGGTGGCAGCAG---AGGCAACG--------------GAA-CGAGCCATGAAATACGAATATAAGCTGGTAGACC-CAAATA-------------------------------GCCAA---------------------------------------------------------G-CC---------GACAATAT--CTATTAAAT---------------------------------------------------------AACCG--ATTT-------------------------CTCAA-----------CCGAGACTAATG--------------------------------ATT---------TTTCG------------AA--CTTTCAGCTGGCCACGGATGAGAAACCGCCGCGG---------AGGAAAAACAGCGGTTCGCCAAASizeHit CountTotal NormTotal
No Reads
droKik1
G------------TTAATATTTAAAGAGAGCCAGCCAAACAGCTG------------AA-ATGTGTTGCTCCGCACGAGTCCCGAGTTTTGCATAAATGTTGTGGCTGAGC---AGGCAACGGGAATCTCCCCGAGAAGTTGAGCGATGAAATACGAATATAAGCTGGTAGAGA-TCT--------------------------------------A---------------------------------------------------------A-CC---------AAA--AAG--CTATTAACT-ACATTTAT------------------------------------------------GACTAAG----------------------GTATACAGTTAG------------TTAAACTAATC-------------------------------CA-A---------TGTTC------------TA--TCTGCAGCTGGCCACCGATGAAAAGCCGCTGCGG---------CGGAAAAACAGCGGCTCCCCGAASizeHit CountTotal NormTotal
No Reads
droAna3
GGGCGGAAGGAAGCAAATATTTGAAAAGAGCCAAAGAAACAGCGG------------AACCTGTGTTGGGGC---CACCTCAGCAGTTATGCATAAATGTTGCGACCCCAA---AACGAACT------------------GGAGCCATGAAATACGAATATAAGCTGGTAGAAA-CACGTCTATTTTAAGTTCCATGTTTGCAAAGCTGGAA-----ATTCCACACACGTTGTCATTTAT-CATAAATATGTTTAGTTTTTAAGTTATTTCTTAGTCC---------CAAAATAGGGCT----------------------------------------------------------------------------------------------------------------------AAAACTCCTT---------------------------------CC---------TACGG------------CC--ATTTCAGCTTGCCACCGACGAGAAGCCGCCCAGA---------CGAAAAAGCAGCGGATCCCCCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................AGCGG------------AACCTGTGTTGGGGC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................TGAAAAGAGCCAAAGAAACAGCGG------------AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAGA---------CGAAAAAGCAGC...........2011.001010000
.........................................................................................................CCCCAA---AACGAACT------------------GGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGA---------CGAAAAAGCAGCGGATCCC....2611.001000010
..................................................................................................................AACGAACT------------------GGAGCCATGA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGA---------CGAAAAAGCAGCGG.........2111.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCACCGACGAGAAGCCGC.....................................2211.001010000
droBip1
-----------------------------------------------------------------------------------CAGTTATGCATAAATATTGTGACC-CGA---AAACAAAG----------------T-CGAGCCATGAAATACGAATATAAGCTGGTAGAGA-AACATT---TTTAAGTTCGATATTTGCAAAGCTGGAT-----ATTTTATA-----------------------------------------------------------------------------AATATATTA-------------------------------------------------------TT-------------------------------------------------AAAATTCTAT---------------------------------------------TCTTTATTA-------AA--ATTCCAGTTGGCCACCGATGAGAAGCCGCCACGA---------CGAAAAGGCAGCGCTTCTCCCAASizeHit CountTotal NormTotal
No Reads
dp5
G------------CTAATATTTAAAACGGG-----CAAACACTTG------------AA-ATGTGTCTAAGC---GAAAGCACCAGTTATGCATAATAATTGCGGCACAGCGACGGGCAGCGACAAACGCAAC--GAAACCGAGCAATGAAATACGAATATAAGCTGGTAGAAA-CCCATATACTA--------------TGCAACT-----A--------------------------------------------------------------------------------AT--CAATTAAA------------------------------------------------------------------------------------------------------------ACATAATTCTAAATCATGTATTTGATCGAACCTACTCTAACCGGTTAAC------------TTTATTCCAATCCCCC--GATTTAGCTGGCTACGGATGATAAACCGTCACAGGGCAACCGCCGGAAAGGCAGCGGCTCCGTCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGCAGCGGCTCCGTCAC2211.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAACCGCCGGAAAGGCAGC...........2311.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCGTCACAGGGCAACCGCCGGA...................2611.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTCACAGGGCAACCGCC......................2111.0010100000000
............................................................ATGTGTCTAAGC---GAAAGCACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...............AATATTTAAAACGGG-----CAAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGCAGCGGCTCCGTC..2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACAGGGCAACCGCCGGAAAGGCA.............2711.0010001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGATGATAAACCGTCACAGGGC.............................2611.0010000100000
..................................................................................................ATTGCGGCACAGCGACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
G------------CTAATATTTAAAACGGG-----CAAACACTTG------------AA-ATGTGTCTAAGC---GAAAGCACCAGTTATGCATAATAATTGCGGCACAGCGACGGGCAGCGACAAACGCAAC--GAAACCGAGCAATGAAATACGAATATAAGCTGGTAGAAA-CCCATATACTA-----------------------------------TGCA-------------------------------------------------------------------------------------------------------------------------------------------ACTATG----------------------CTATGCAACTAATCAATTAAAACATAATTCTAAATGATGTATTTGATCGAACCTACTCTAACCGGTTAAC------------TTTATTCCAATCCCCC--GATTTAGCTGGCTACGGATGATAAACCGTCACAGGGCAACCGCCGGAAAGGCAGCGGCTCCGTCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGTCACAGGGCAACCGCC......................2212.002002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGGCAACCGCCGGAAAGGCAGCG..........2711.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGGATGATAAACCGTCACAGGGC.............................2711.001001000
.........................................................................................................................GACAAACGCAAC--GAAACCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAGGCAGCGGCTCC.....1811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCCGGAAAGGCAGCGGCT.......2211.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAACCGCCGGAAAGGCAGC...........2211.001001000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------ATGAAATACGACTACAAGCTGGTAGAAA-ATATCA-------------------------------TGAAA---------------------------------------------------------A-CA---------AACAAACT--ATACATAAT---------------------------------------------------------ATTGA-C----------------------ATTGAC-----------------ACGTTGT-TATT-------------------------------TGAT---------TATT-------------TT--TATACAGTTGGCAACTGATGATAAACCGGCAGCGG---------GGAATCGCCG---------TAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAACCGGCAGCGG---------GGAAT.................2413.00300210
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACCGGCAGCGG---------GGAAT.................2112.00200110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGATAAACCGGCAGCGG---------G.....................2411.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATGATAAACCGGCAGCGG---------GG....................2511.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATAAACCGGCAGCGG---------GGAAT.................2511.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGATAAACCGGCAGCGG---------G.....................2211.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAACCGGCAGCGG---------G.....................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T-TATT-------------------------------TGAT---------TATT-------------TT--TATACAGT..........................................................2311.00100010
droVir3
G------------CAAACAATTGACG----------AAGCTGCCA------------GC-ATGTGTTTTAAG---GAAAATGCTGGTTATTTATAGAT--------AGCAA---AAGCAGC----------------------GCAATGAGATACGAATACAAGCTGGTAGACT-GTCGTG---------C---------------------TCT--------------------------------------------------------------C----A----AGCAATAA--TTATTAAAT-ACATTTAAAAACGA------------------------------------------------------------------------------GCCAA------------CTATATTAATT--------------------------------GTG---------TT--------------CAT--TTTGCAGCTGGCCAGCGATGATAAAGTGACGCCGGCGAATCGACGCAAGGGCAGCGG--CGCCGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAAGTGACGCCGGC..............................2015.005000000000100000020000000000000000000000000000000000000000000020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGACGCAAGGGCAGCGG--C......2212.002000100000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAATCGACGCAAGGGC..............1912.002000000010000010000000000000000000000000000000000000000000000000
..............................................................GTGTTTTAAG---GAAAATGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.............................................................TGTGTTTTAAG---GAAAATGCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................CGAATACAAGCTGGTAGACT-G..............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGATAAAGTGACGCCGGC..............................2211.001000000000000000001000000000000000000000000000000000000000000000
............................................................ATGTGTTTTAAG---GAAAATGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAATT--------------------------------GTG---------TT--------------CAT--TTTG..............................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTGCAGCTGGCCAGCGATG..............................................2111.001000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGATAAAGTGACGCCGG...............................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................TTAAG---GAAAATGCTGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAAGTGACGCCGGCG.............................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGCAAGGGCAGCGG--CGCC...2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAGC----------------------GCAATGAGATACGAATACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCAGCGATGATAAAGTGACGCC.................................2611.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAAGTGACGCCGGCC.............................2111.001000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGATAAAGTGACGCCGGCC.............................2411.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGCAAGGGCAGCGG--CGC....2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGATAAAGTGACGC..................................1811.001000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCGAATCGACGCAAGGGCAGC...........2511.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACGCCGGCGAATCGAC......................2011.001010000000000000000000000000000000000000000000000000000000000000
...............AACAATTGACG----------AAGCTGCCA------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGAATCGACGCAAGGGCAGC...........2311.001000000000001000000000000000000000000000000000000000000000000000
.............CAAACAATTGACG----------AAGCTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
A---------------AGACTTGAACTAAA-----CAAACAATTGAGGCAGCTGGCAAC-ATGTGTTTTAAG---GAAAATGCTGGTTATTTATAGA--------CAGCAA---ACGCA----------------------CAGACATGAGATACGAATACAAGCTGGTAAAGA-ATTTTA-------------------GAGAGAC-----ATTAAATTATACACATATATGTACATATGCATATGTATTT---------------------------------------------GTACATTTC---------------------------------------------------------ATTGA-C--T-------------------GTTGTC-----------------GTATA--------------------------------GTTGCTTAAT---------GTGT--TTTATATTGCCAT--GTTGCAGCTGGCCAGCGATGACAAATCATCGCAGCAAAATCG------ACGCAAGGGCAGCCCCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................CAAC-ATGTGTTTTAAG---GAAAATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAATCATCGCAGCAAAATCG------AC................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCAAAATCG------ACGCAAGGGCA.......2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATCG------ACGCAAGGGCA.......2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGCCAGCGATGACA...........................................1811.001100000
droGri2
A------------------------G--TG-----CAAACAACTGACGCGGCAGCCAAA-ATGTGTTTCAAC---GAAAATGCTGCTTATTTATAGA--------CAGCAA---ACGAGC----------------------CGCAATGAGATACGAATACAAACTGGTAGAAC-GTTGCG---------CTCCTCATTAGCAAATA-----ATT-A---------------------------------------------------------A-CA---------AAAAAAAA--A---------------------CAGAAAACCAAAAACAGAATCACTTGAAAATTGTACAAATAAAAAACTA--TTTTACTAATTGTGTTATTATTT------CTCTT-----------TTGTTAT---------------------------------------TATTATTGTTTTCTT-----------TAT--TATGCAGCTGGCTAGCGATGATAAATTGCCGCAGGCAAATCGCCGCAAGAACAGCGG------CAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................ATTTATAGA--------CAGCAA---ACGAGC----------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................2220.50110
...................................................................TCAAC---GAAAATGCTGCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101

Generated: 05/19/2015 at 01:21 AM