ID:

dsi_27576

 Coordinate:

x:9701017-9701359 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.2 -4.9 -4.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATCGGATCCAAGCTGTTTTTGGTCGTCTCGGACTCAAAAAAAAAGAAACGTAAATCCATCGGTACTAAACGCGATTGTGGAAGGCGCCTCGTTCTTGTGATACCTCTGCCGTGAATCGATGTTCGGTTTGCCGAAAATAATAAGGTGGCAGGTGAAACGCTCATTCCCCTCTCGCTCGCACAAACACACCTCCTGCCAGGAACGGAAAGTAACAACAAAAACAACTGGAAGAAGCGGCTAAGGTGGAAGCGAGATGGAGTTAGCAGGATGGATGCTAGTGTGGGAAAGGAGAGCGGAGAGAAGACAGAAAAATCAAATCCAAATCTAAAGATTCATCCCTTTTTTCTGTTGCCTCTCTTTCGTCACCTCCTTTTTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCACGGCTCTTTCGATTTTCATTTT
*******************************************************************...(((((.((.((......)).))...)))))...........******************************************************************************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 M053
female body
...................................................................AAACGCGATTGTGGAAGG...................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0
...........................CTCGGACTCAAAAAAAAAGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................CGATTGTGGAAGGCGCCT................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGCCAGGACCGGAAGGTAGCAAC.................................................................................................................................................................................................................................. 23 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTTCTCTTTTCTCCACGGC.................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGGACTCAAAAAAAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGTTCTTGTGATACCTCTGCC............................................................................................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TTTTCTGTTGCCTCTCTTTCGTCAC............................................................................ 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................CGATTGTGGAAGGCGCCTCGTT............................................................................................................................................................................................................................................................................................................................................................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................TTCGTCACCTCCTTTCT................................................................... 17 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................CGCGATTGTGGAAGGCGCCT................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGCCGAAAATAATAAGGTGGC..................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................CCTCGTTCTTGTGATACCT................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AACGTAAATCCATCGGTACTA....................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AACGTAAATCCATCGGTACT........................................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TCCATCGGTACTAAACGC.................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACTAAACGCGATTGTGGAAGGCG.................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TTTTTCTGTTGCCTCTCTTTCGTCACC........................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAATCCATCGGTACTAAAC.................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................TCGGACTCAAAAAAAAAGAAACG........................................................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................CGGACTCAAAAAAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CTCGTTCTTGTGATACCT................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACACCTCCTGCCAGGAACGGAA........................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAGAAGCGGCTAAGGTGGAAG................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................ACGCGATTGTGGAAGGGG.................................................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTTCTTGTGATACCTCTGCCGTGA........................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCTTTTCTCCACG.................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................CTCGGACTCAAAAAAAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................CGTAAATCCATCGGTACTAA...................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AACGCGATTGTGGAAGGC..................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACTAAACGCGATTGTGGAAGGCGCC.................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................AACGCGATTGTGGAAGGCG.................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAAATCCATCGGTACTA....................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACGCGATTGTGGAAGGCGC................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................CAGGACCGGAAGGTAGCAAC.................................................................................................................................................................................................................................. 20 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................AACGCGATTGTGGAAGGCGCCTCGT.............................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................CGCGATTGTGGAAGGCGC................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........AAGCTGTTTTTGGTCGTCTCG............................................................................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................AACGCGATTGTGGAAGGCGC................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACTAGACGCGATTGTGGAAG....................................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.ATCGGATCCAAGCTGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................CGGAGGGAAGACAGTAAAA.................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................ACAGAAAGATCAAATCCAAAA...................................................................................................................... 21 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................CTCGGACTCAAAAAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................. 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGGTGAAACGCTGATTGCC.................................................................................................................................................................................................................................................................................. 20 3 11 0.18 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................TCCACCATCAGCTGAGTCGC........................................ 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTCCTCGGCTCT............... 16 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..TAGGATCCATGCTGTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................CCGCGATCGTGGAAGGC..................................................................................................................................................................................................................................................................................................................................................................... 17 2 17 0.12 2 0 0 0 0 1 1 0 0 0 0 0 0 0
...............GTTTTTGGTCGTTTAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................GGTGAAACGCTGATTGCC.................................................................................................................................................................................................................................................................................. 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................GCAGGTTGGATGCTAAT................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................AACGGAAAGTAATAAC.................................................................................................................................................................................................................................. 16 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................GAAGAAGCGCATACGGTGG.................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................TCGCGGACTCGAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGTGGCTCTGTT.................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAGAAGCGCATACGGTGGA................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................CCCGCCAGGACCGGAA........................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................CTCCGGTTGGCCGAAAATAA.............................................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CACGAAAAAGCGGCTAAGG....................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTAGCCTAGGTTCGACAAAAACCAGCAGAGCCTGAGTTTTTTTTTCTTTGCATTTAGGTAGCCATGATTTGCGCTAACACCTTCCGCGGAGCAAGAACACTATGGAGACGGCACTTAGCTACAAGCCAAACGGCTTTTATTATTCCACCGTCCACTTTGCGAGTAAGGGGAGAGCGAGCGTGTTTGTGTGGAGGACGGTCCTTGCCTTTCATTGTTGTTTTTGTTGACCTTCTTCGCCGATTCCACCTTCGCTCTACCTCAATCGTCCTACCTACGATCACACCCTTTCCTCTCGCCTCTCTTCTGTCTTTTTAGTTTAGGTTTAGATTTCTAAGTAGGGAAAAAAGACAACGGAGAGAAAGCAGTGGAGGAAAAAGGGCGAGAGGGGGTAGTCGACACAGAGACACAAGAGAAAAGAGGTGCCGAGAAAGCTAAAAGTAAAA
********************************************************************************************************************************************************************************************************************************************************************************************************************************************...(((((.((.((......)).))...)))))...........******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
.................................................GCATTTAGGTAGCCATGATTTGC................................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................AGCGAGAACACTATGGAG................................................................................................................................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................ACCGAGACGGCACTTAGCT................................................................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................AAGCGAGAACACTATGGAGG............................................................................................................................................................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................AAGCGAGAACACTATGGA................................................................................................................................................................................................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TTGTTTAGGTCTAGATGTCTAA............................................................................................................. 22 3 2 0.50 1 0 0 0 0 1 0 0 0
...........................................................................................CGAGAACACTATGGAG................................................................................................................................................................................................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................CCACCTCAGTCGTCCTAGCTA......................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................AGAGTGTTTGTGTAGAGGAG....................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................GTGTTTTTAGATTAGGTTAAGA.................................................................................................................... 22 3 6 0.17 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................AAAACGGGCTAGAAGGGGTAG................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1
..............................................................................CCCTTCGGCGGAGCAAGTA.......................................................................................................................................................................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................TCTACCTCAATGGTC................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 1 0 0 0 0
.....................CCAGCAGAGCATGATT...................................................................................................................................................................................................................................................................................................................................................................................................................... 16 2 12 0.08 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................................................................TGAGAGAGCAGTGGAGG........................................................................ 17 2 12 0.08 1 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................................GCTCTCTTGTGTCTTTTTAAT............................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................CCACCTCAATAGTCCT.............................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................GGAGCACGGTCCTTACTT............................................................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GTGTGTGTGTTGGGGACGGTC................................................................................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:9700967-9701409 - dsi_27576 GATCGGAT---CCAAGCTGTTT--TTGGTCGTCTCGGA-CTCAAA--AAA-AAAGAAACGTAAATCCATCGGTACTAAACGCGATTG-----TGGAAGGCGCCTCGTTCTTGTGATACCTCTGCCGTGAATCGA-------TGTTCGGTTTGCC---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--T----CATT---------------CCCCTCTCGCTCGCACAAACACA---CCTCCTGCC-AGGAACGGAAAGTAACAACA-AAAACAACTG-----GA---------AGAAGCGGCTAAGGTGGAAGCGAGATGGAGTTAG-CAGGATGGATGCTAGTGTGG-------GAA-A------GGAGAGCGGAGAGAAGAC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTTTTTCTGT-TGCCTCTC--T----TTCGTCACCTCCTTT-------TTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTCATTTT
droSec2 scaffold_15:921568-922009 - GATCGGAT---CCAAACTGTTT--TTGGTCGTCTCGAA-CTCAAA--AAA-AAAGAAACGTAAATCCATCGGTACTAAACGCGATTG-----TGGAAGGCGCCTCGTTCTTGTGATACCTCTGCCGTGAATCGA-------TGTTCGGTTTGCA---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--T----CATT---------------CTCCTCTCGCTCGCACAAACACA---CCTCCTGCC-AGGAACGGAAAGTAACAACA-AAAACAACTG-----GA---------AGAAGCGGCTAAGGTGGAAGCGAGATGGAGTTAG-CAGGATGGATGCTAGTGTGG-------GAA-A------GGAGAGCGGAGAGAAGAC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTTTTTCTGT-TGCCTCTC--T----TTCGTCACCTCCTTT-------TTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTCAT-TT
dm3 chrX:10219526-10219966 - GATCGGAT---CCAAGCTGTTT--TTGGTCGTCTCGAA-CTCAAA----A-AAAGAAACGTAAATCCAGCGGAATTAAACGCGATTG-----TGGAAGGCGTCTCGTTCTTGTGATACCTCTGCCGTGAATCGA-------TGGTCGGTTTGCG---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--G----CATT---------------CCCCTCTCTCTCGCACAAACACA---CCTCCTGCC-AGGAACGGAAAGTAACAACA-AAAACAACTG-----GA---------AGAAGCGGCTAAGGTGGAAGCGAGATAGAGGTAG-CTGGATGGATGCTAGTGTGG-------GAA-A------GGAGAGCGAAGAGAAGTC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTT-TTCTGT-TGCCTCTCTCT----TTCGTCACCTCCTTT-------TTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTCTT-TT
droEre2 scaffold_4690:4909602-4910044 + GATCGGAT---CCAAGCTGTTT--TTGGTCGTCTCGAA-CTCAAATAAAA-AAAGAAACGTAAATCCATCGGAATTAAACGCGATTG-----TGGAAGGCGCTTCGTTCCTCTCGTAACTTTGCCGTGAATCGA-------TGGTCGGCTTGCG---GAAAA--T-CGTA--AGGTGGCAGGTGAAACGC--G----TATT---------------CTCTTCTCGCTCGCACAAACACA---CCTCCTGCG-AGGAACGGAAAGTAACAACA-AAAACAACTG-----AA---------AGAAGCGGCTAAGGTGCAAGCGAGATGGAGACAC-CGAGATGGATGCCAGCGGTG-------GAA-A------GGAGAACGAAGAGAAGGC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTT-TTCTGT-TTCCTCTCTCT----TTCGTCACCTCCTTT-------TTCCCACTCTC-CCCATCAGCTGTGTCTCTGTGTTCTCTTTTCGCCA------CTGCTCTTTTGATTTTCA--TT
droYak3 X:18796886-18797330 - GATCGGAT---CCAAGCTGTTT--TTGGTCGCCTCGAA-CTCAAA----A-AAAGAAACGTAAATCCATCGGAATTAAACGCGACTG-----TGGAAGGCGAACGGGGCGTGTAATACTTCTACCGTGAATCGA-------TGGTCGGCTTGCG---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--G----TATT---------------CTCGTCTCGCTCGCACAAACACA---CCTCCTGCG-AGGAACGGATAGCAACAACA-AAAACAACTG-----AA---------AGAAGCGGCTAAGGCGCAAGTGAGATGGAGATAC-CTAGATGGATGCTAGTGGGG-------GAAAA------GGAGAACGGAGAGAAGAC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTT-TTCTGT-TTCCTCTCTCTTACTTTCGTCACCTCCTTT-------TTCCCACTCTT-CCTATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTTAT-TT
droEug1 scf7180000409509:639983-640372 + T---GGATGCCTCAAGCTGTTTATTTAGTCGTCTCGAAACTCAA---------AAAAACGTAAATTTTTCTGAATTAACCGCGGTTA-----CCGAAGACGGCTCGATGGTTTGACAGCGTTACTGCGAATCGG-------CGTTCGATTTAAG--CGAAAA-TT--ATAA-AAGTGGCAGGTGAAATAGTCG----TATC---------------CCCCTCTCGCTCGCACAT--ACATCTCTTCCTTCG-AGC--------GAAACAACA-AAAACAACAG-----CA---------AGAAGCGGCTGAGGTGCGAGTGAGATGGTC--AACCA---------------------------A-GGGGATAGG---------AGGAGAAAGGAGA--AA------AATCCAAA-TCAAA-------AGATTCATCCCTTT-TTCTGC-TTCCTCTC--T----TTTATCTTCTCCTTT-------CTCCCATTC--CCCCATCAGCTGTGT-------TTCTCTTTTCTTCA------CGGTTCTTTC-----------T
droBia1 scf7180000302187:1164481-1164869 + -------------------------------------A-CTCAAA--AACCCAAAAACCGTGGACC-AACCGAACTGAACGCGATTC-----T-GAGGACGCCTCGATGGTTCGACAGCTCAGCTGCAGATCGC-------CGTTCGATTAGTG---CGAAACCCAGAAA--AAGTGGCAGGTGAAACGC--GACGGCGACCCCCTCGGCGGACCGCCCCTCTCGCTCGCACCAG-----CTCCTCTTGCG-GGG--------GCAACAACA-AAAGCGCCAG-----GA---------GGAAGCGGCCGATGTGCGAGCGGGACGGCT--GT------------CTGG-GG-------GTGAA-A------GGAG-------AGGAGGCAGGAGG--AAAT-TCAAAGCCAAA-TTCAAAAGATTCAGATTCATCCCTTT---CTGA-TTTCTCTCCCT-----GCCTCGCCTCCTTT-------CTCCCTTTCTTCCCCATCAGCTGTGC-------TTCTCACTTCCCCA------CCGTTTT-------------GT
droTak1 scf7180000415872:906458-906844 - ------------------------------------------AA---------AAAAACGTAAGCCCGTCAGATTTAAACGCGAATC-----TCGAAAAGGCCTCGATGGTTTGACGGCTCGGCTGCCAATCGAATTGAATCGTTCGGTTTGTGTGTGAAAA-GT--AAA--AAGTGGCAGGTGAATCGC--GGCGG-GACCCCCTCGTCGCAGCCCCCCTCTCGCTCGCACA--CGCAGCTCCTGCTGCG-GGG--------GAAACAACA-AAAACACCAG-----GA---------AGAAGCGGCTGGGGTGCGAGCGAGATGGAT--A-------------GTGGCGCGGGGGCGGAGAA-A------GGAGAAGAAAGCCGAGGC-GGAGA--AAAATCCAAAATCAAAATCAAA-------AGATTCATCCCTTT-TA-TGCTATG----C--T----TTCCCCATCTCCTTT-------CTCC----------CATCAGCTGTGC-------TTCTCTTTTCTCCA------CCGTTCTTT---------T-TT
droEle1 scf7180000490214:1637711-1638078 + -----------CCAAGCTGTTTATTTAGTCGTCTCGAA-CTCAA---------AAAACCGTAAATCCAT-AGAATTAAACGTGTTTG-----TCGAAAACGCCCAGCTGAATTGACTCCATAGCTGCAATTTGA-------CGTTCGATTTGTG---TAAAA--T-A-TAAATTGTGGCAGGTGAAACAC--G------TC---------------GCCGTCTCGCTCGCACAG----A---CCTCCTTGGTGGC--------AAAACAACA-AAAACACCAG-----AA---------AGAAGCGGCGACGATGTGAGCGAGATTGATTTGA------------TTGG---GG-----GTGAA-G------GG--AA--TAAAGGAGACGGGAGACGAA------AATCAAAA-TCAAA-------AGATTCATCCCTTT-TT-TGC-TTCCTCTCTCT----T---TCATCTCCTTT-------CTC--------CTCCATCAGCTGTGT-------TACTCTTTTTTACA------TTA---------------T-TT
droRho1 scf7180000779985:352408-352805 - -------T---CCAAGCTGTTTATTTAGTCGTCTCCAAACTCAA---------AAAAGTGTAAATTCAT-AGAACCAAACGCGATTG-----TCTAAAACGCCCCGATGGTTTGACGGCTAAGCTGCAAATCGA-------CGTGCGGTTTGTG---TAAAGA-T--ATAAATTGTGGCAGGTGAAACACTGG----TGTC-CCCTCA-AACATCGCCCCTCTTGCTCGCACAC----AACTCCTCCTTGG-AGG--------AAAACAACA-AAAACACCAG-----GA---------AGAAGCGGCGATGGTGCGAGCGAGTTGG-------CTGGAAGA--------GTG------GTGAA-G------GG--AG--TAAAGGAGACGGGAGACGAA------AATCAAAA-TCAAA-------AGATTCATCCCTTT-TTCAGC-TTCCTCTCTCT----T---TTATCTCCTTT-------CTCCCATTCTCCTCCATCAGCTGTGT-------TTCTTTTTTCTCCA------TAC---------------T-TT
droFic1 scf7180000454073:3146452-3146849 - -------T---CCAAGCTGTTTATTTAGTCGTCTCGAATCTCAA---------AAAACCGTAAATCCAA-TAAATTAAACGCGATAGAATAGACGAAAACGGCTCGTTAGTTTGACAGCTAAGCTGTGAATCGA-------CGTTCGATTTGTG---CGGAAA-T--ACA--AAGTGGCAGGTGAAACT-------------CCCTCG-CACATCACCCCTCTCGCTCACACGC------CTCCTCCTGCG-AGG--------GCAACAAAAAAAAACACAAG-----GA---------AGAAGCGGTAGAGGTGTGCGCGAGATAAATTTA-------------CTGGCATGG-------GAA-A------AGGGAA--GAAAGGAGACTGGAGA--AAAA-TCA-----AAA-TCATA-------AGATTCATCCCTTT-TTCTGC-CACCTCTCTCTCACTT---TCATCTCCTTT-------CTCCCATACTC-CCCGTCAGCTGTGT-------TTCTCATTTCCCCA------TTGGT-------------T-TT
droKik1 scf7180000302592:940488-940742 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGGCTGACGGTACT--------GACG----------CCCCTCTCCCCTTGCTAAC-----CACC-CGCCCCCTCAA-AGA--------ACAACAACG-AACACAACAAAACTGGCAGAAGCAGCAGCAGCAGCCAGGGCGCGAGCGAA----------------------------------------------------GGAGAAAGGGAGAAG---AAA--AAAA-TCAAAGCGACG-CCTTC--CTTTCAGATTCATCCCTTT-CTC--T-TTGCTCTC--T----TTTATCACC---TATCTCCTGTCTGCCATCTT--CTCGTTA----------------------TTTGCAAAAAAGTGGCTATTTT--TTTCTAA-TT
droAna3 scaffold_13248:3503052-3503074 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCTGACGTTTTTTTTTTT
droBip1 scf7180000393726:73217-73225 + TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATCGGAT---CCAAGCTGTTT--TTGGTCGTCTCGGA-CTCAAA--AAA-AAAGAAACGTAAATCCATCGGTACTAAACGCGATTG-----TGGAAGGCGCCTCGTTCTTGTGATACCTCTGCCGTGAATCGA-------TGTTCGGTTTGCC---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--T----CATT---------------CCCCTCTCGCTCGCACAAACACA---CCTCCTGCC-AGGAACGGAAAGTAACAACA-AAAACAACTG-----GA---------AGAAGCGGCTAAGGTGGAAGCGAGATGGAGTTAG-CAGGATGGATGCTAGTGTGG-------GAA-A------GGAGAGCGGAGAGAAGAC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTTTTTCTGT-TGCCTCTC--T----TTCGTCACCTCCTTT-------TTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTCATTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................AAACGCGATTG-----TGGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.00541000000000000000
................................CTCGGA-CTCAAA--AAA-AAAGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00310200000000000000
.................................................................................CGATTG-----TGGAAGGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTTCTCTTTTCTCCA------CGGC..................2412.00220000000000000000
..................................CGGA-CTCAAA--AAA-AAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
........................................................................................................CGTTCTTGTGATACCTCTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTGT-TGCCTCTC--T----TTCGTCAC.........................................................................................2512.00200000002000000000
.................................................................................CGATTG-----TGGAAGGCGCCTCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000000000002000
...............................................................................CGCGATTG-----TGGAAGGCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....................................................................................................................................................TTGCC---GAAAA--T-AATA--AGGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
.....................................................................................................CCTCGTTCTTGTGATACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
........................................................AACGTAAATCCATCGGTACTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................AACGTAAATCCATCGGTACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
................................................................TCCATCGGTACTAAACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
........................................................................TACTAAACGCGATTG-----TGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTGT-TGCCTCTC--T----TTCGTCACC........................................................................................2711.00100100000000000000
............................................................TAAATCCATCGGTACTAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
.................................TCGGA-CTCAAA--AAA-AAAGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..................................CGGA-CTCAAA--AAA-AAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......................................................................................................CTCGTTCTTGTGATACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................................................................................................ACA---CCTCCTGCC-AGGAACGGAA...........................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.................................................................................................................................................................................................................................................................................................A---------AGAAGCGGCTAAGGTGGAAG..................................................................................................................................................................................................................................................2111.00100000000000010000
.........................................................................................................GTTCTTGTGATACCTCTGCCGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCTTTTCTCCA------CG....................1911.00100001000000000000
................................CTCGGA-CTCAAA--AAA-AAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..........................................................CGTAAATCCATCGGTACTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.............................................................................AACGCGATTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.........................................................................ACTAAACGCGATTG-----TGGAAGGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.............................................................................AACGCGATTG-----TGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...........................................................GTAAATCCATCGGTACTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............................................................................ACGCGATTG-----TGGAAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.............................................................................AACGCGATTG-----TGGAAGGCGCCTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
...............................................................................CGCGATTG-----TGGAAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............AAGCTGTTT--TTGGTCGTCTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.............................................................................AACGCGATTG-----TGGAAGGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.ATCGGAT---CCAAGCTGTTT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
................................CTCGGA-CTCAAA--AAA-AAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.20110000000000000000
droSec2
GATCGGAT---CCAAACTGTTT--TTGGTCGTCTCGAA-CTCAAA--AAA-AAAGAAACGTAAATCCATCGGTACTAAACGCGATTG-----TGGAAGGCGCCTCGTTCTTGTGATACCTCTGCCGTGAATCGA-------TGTTCGGTTTGCA---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--T----CATT---------------CTCCTCTCGCTCGCACAAACACA---CCTCCTGCC-AGGAACGGAAAGTAACAACA-AAAACAACTG-----GA---------AGAAGCGGCTAAGGTGGAAGCGAGATGGAGTTAG-CAGGATGGATGCTAGTGTGG-------GAA-A------GGAGAGCGGAGAGAAGAC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTTTTTCTGT-TGCCTCTC--T----TTCGTCACCTCCTTT-------TTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTCAT-TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................AACGCGATTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030021
.................................................................................................................................................................A--T-AATA--AGGTGGCAGGTG.........................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
..........................................................................................................................................................................................................................................................................................................................................................................AA-A------GGAGAGCGGAGAGAA..............................................................................................................................................................................1811.0011000
...............................................................................................................GTGATACCTCTGCCGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...............................................................................CGCGATTG-----TGGAAGGCGCCTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
....................................................................................................................ACCTCTGCCGTGAATCGA-------T...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.............................................................................................................................................................................................................................................................................................................AAGCGGCTAAGGTGGAAG..................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................GCTAAGGTGGAAGCGAGATGGAG........................................................................................................................................................................................................................................2311.0010100
.....................................................................................................................................................................................................................................................CCTGCC-AGGAACGGAAAGTAACAAC..................................................................................................................................................................................................................................................................................................2511.0010100
dm3
GATCGGAT---CCAAGCTGTTT--TTGGTCGTCTCGAA-CTCAAA----A-AAAGAAACGTAAATCCAGCGGAATTAAACGCGATTG-----TGGAAGGCGTCTCGTTCTTGTGATACCTCTGCCGTGAATCGA-------TGGTCGGTTTGCG---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--G----CATT---------------CCCCTCTCTCTCGCACAAACACA---CCTCCTGCC-AGGAACGGAAAGTAACAACA-AAAACAACTG-----GA---------AGAAGCGGCTAAGGTGGAAGCGAGATAGAGGTAG-CTGGATGGATGCTAGTGTGG-------GAA-A------GGAGAGCGAAGAGAAGTC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTT-TTCTGT-TGCCTCTCTCT----TTCGTCACCTCCTTT-------TTCCCGCTCTCCCCCATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTCTT-TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................AACGCGATTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000200000100000000100001000000000000000000110000000000000020000100020000000000000000
.........................................................................ATTAAACGCGATTG-----TGGAAGGCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AACGCGATTG-----TGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000100000000000001000110000000000000000
............................................................................AAACGCGATTG-----TGGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000100100
.................................................................................................................................ATCGA-------TGGTCGGTTTGCG---GAA.................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000100100000
............................................................................................................................................................................................................................................................AGGAACGGAAAGTAACAACA-AAAAC...........................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CGCGATTG-----TGGAAGGCGTCTCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
.......................................................................GAATTAAACGCGATTG-----TGGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTCGAA-CTCAAA----A-AAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCTCTTTTCTCCA------CGGCTCT...............2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GTTTGCG---GAAAA--T-AATA--AGGT.................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GA-------TGGTCGGTTTGCG---GAA.................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
.......................................................................................................................TCTGCCGTGAATCGA-------TGGTCGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000100000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TGGATGGATGCTAGTGTGG-------GAA-A------GGA..........................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AGGTAG-CTGGATGGATGCTAGTGT.................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TT---------------CCCCTCTCTCTCGCACAAACACA---CC.............................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AACGCGATTG-----TGGAAGGCGTCTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CGCGATTG-----TGGAAGGCGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACGCGATTG-----TGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTT-TTCTGT-TGCCTCTCTCT----TTC..............................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AAACGCGATTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................AGCGGCTAAGGTGGAAGCGAG..............................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................................................................AATCGA-------TGGTCGGTTTGCG---GA..................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTCGAA-CTCAAA----A-AAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GTAAATCCAGCGGAATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000010000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCGA-------TGGTCGGTTTGCG---GAAAA--T-AA.........................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TGGATGCTAGTGTGG-------GAA-A------GGAGAGC......................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
.....................................................AGAAACGTAAATCCAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000
.........................................................................ATTAAACGCGATTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GCGAGATAGAGGTAG-CTGGATGGAT.........................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCCTTT-TTCTGT-TGCCTCTCTCT----.................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TAGAGGTAG-CTGGATGGATGCTAGTG..................................................................................................................................................................................................................2612.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGAATCGA-------TGGTCGGTTTGCG---GAAAA--.............................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTGTTT--TTGGTCGTCTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ATAGAGGTAG-CTGGATGGATGCTAG....................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AGCGAGATAGAGGTAG-CTGGATGG...........................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TAGAGGTAG-CTGGATGGATGCTAG....................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...........................................................................................................TCTTGTGATACCTCTGCCGTGAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTAAACGCGATTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AGTGTGG-------GAA-A------GGAGAGCGAAG..................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TGGATGGATGCTAGTGTGG-------GAA-A------.............................................................................................................................................................................................2312.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AGTGTGG-------GAA-A------GGAGAGCGAAGAGA...............................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................GTGAATCGA-------TGGTCGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CGCGATTG-----TGGAAGGCGTCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AGGTAG-CTGGATGGATGCTAGTGTG................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..............................................................................ACGCGATTG-----TGGAAGGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCGGAATTAAACGCGATTG-----TGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGCGGAATTAAACGCGATTG-----TGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CGGCTAAGGTGGAAGCGAG..............................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................TGCC-AGGAACGGAAAGTAACAACA-AA..............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GATCGGAT---CCAAGCTGTTT--TTGGTCGTCTCGAA-CTCAAATAAAA-AAAGAAACGTAAATCCATCGGAATTAAACGCGATTG-----TGGAAGGCGCTTCGTTCCTCTCGTAACTTTGCCGTGAATCGA-------TGGTCGGCTTGCG---GAAAA--T-CGTA--AGGTGGCAGGTGAAACGC--G----TATT---------------CTCTTCTCGCTCGCACAAACACA---CCTCCTGCG-AGGAACGGAAAGTAACAACA-AAAACAACTG-----AA---------AGAAGCGGCTAAGGTGCAAGCGAGATGGAGACAC-CGAGATGGATGCCAGCGGTG-------GAA-A------GGAGAACGAAGAGAAGGC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTT-TTCTGT-TTCCTCTCTCT----TTCGTCACCTCCTTT-------TTCCCACTCTC-CCCATCAGCTGTGTCTCTGTGTTCTCTTTTCGCCA------CTGCTCTTTTGATTTTCA--TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................GTAACAACA-AAAACAACTG-----AA---------AGA...................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................................GCGCTTCGTTCCTCTCGTAACTTTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
..........................................................................................................................................................................................................................................................................................................................................CAC-CGAGATGGATGCCAGCGGTG-------GA......................................................................................................................................................................................................2511.0010000100
.............................................................................AACGCGATTG-----TGGAAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................................................................................................AATCGA-------TGGTCGGCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................TGTTT--TTGGTCGTCTCGAA-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
GATCGGAT---CCAAGCTGTTT--TTGGTCGCCTCGAA-CTCAAA----A-AAAGAAACGTAAATCCATCGGAATTAAACGCGACTG-----TGGAAGGCGAACGGGGCGTGTAATACTTCTACCGTGAATCGA-------TGGTCGGCTTGCG---GAAAA--T-AATA--AGGTGGCAGGTGAAACGC--G----TATT---------------CTCGTCTCGCTCGCACAAACACA---CCTCCTGCG-AGGAACGGATAGCAACAACA-AAAACAACTG-----AA---------AGAAGCGGCTAAGGCGCAAGTGAGATGGAGATAC-CTAGATGGATGCTAGTGGGG-------GAAAA------GGAGAACGGAGAGAAGAC---AGA--AAAA-TCAAATCCAAA-TCTAA-------AGATTCATCCCTTT-TTCTGT-TTCCTCTCTCTTACTTTCGTCACCTCCTTT-------TTCCCACTCTT-CCTATCAGCTGTGTCTCTGTGTTCTCTTTTCTCCA------CGGCTCTTTCGATTTTTAT-TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................GATAC-CTAGATGGATGCTAGT...................................................................................................................................................................................................................2111.00101000000000
.........................................................................ATTAAACGCGACTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................GAGATAC-CTAGATGGATGCTAGT...................................................................................................................................................................................................................2311.00100000010000
............................................................................AAACGCGACTG-----TGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...............................................................................................................................................................................................................................................................................A-AAAACAACTG-----AA---------AGAAGCGG..............................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................GATGGAGATAC-CTAGATGGA..........................................................................................................................................................................................................................2011.00100000010000
...............................................................ATCCATCGGAATTAAACGCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
droEug1
T---GGATGCCTCAAGCTGTTTATTTAGTCGTCTCGAAACTCAA---------AAAAACGTAAATTTTTCTGAATTAACCGCGGTTA-----CCGAAGACGGCTCGATGGTTTGACAGCGTTACTGCGAATCGG-------CGTTCGATTTAAG--CGAAAA-TT--ATAA-AAGTGGCAGGTGAAATAGTCG----TATC---------------CCCCTCTCGCTCGCACAT--ACATCTCTTCCTTCG-AGC--------GAAACAACA-AAAACAACAG-----CA---------AGAAGCGGCTGAGGTGCGAGTGAGATGGTC--AACCA---------------------------A-GGGGATAGG---------AGGAGAAAGGAGA--AA------AATCCAAA-TCAAA-------AGATTCATCCCTTT-TTCTGC-TTCCTCTC--T----TTTATCTTCTCCTTT-------CTCCCATTC--CCCCATCAGCTGTGT-------TTCTCTTTTCTTCA------CGGTTCTTTC-----------TSizeHit CountTotal NormTotal
No Reads
droBia1
-------------------------------------A-CTCAAA--AACCCAAAAACCGTGGACC-AACCGAACTGAACGCGATTC-----T-GAGGACGCCTCGATGGTTCGACAGCTCAGCTGCAGATCGC-------CGTTCGATTAGTG---CGAAACCCAGAAA--AAGTGGCAGGTGAAACGC--GACGGCGACCCCCTCGGCGGACCGCCCCTCTCGCTCGCACCAG-----CTCCTCTTGCG-GGG--------GCAACAACA-AAAGCGCCAG-----GA---------GGAAGCGGCCGATGTGCGAGCGGGACGGCT--GT------------CTGG-GG-------GTGAA-A------GGAG-------AGGAGGCAGGAGG--AAAT-TCAAAGCCAAA-TTCAAAAGATTCAGATTCATCCCTTT---CTGA-TTTCTCTCCCT-----GCCTCGCCTCCTTT-------CTCCCTTTCTTCCCCATCAGCTGTGC-------TTCTCACTTCCCCA------CCGTTTT-------------GTSizeHit CountTotal NormTotal
No Reads
droTak1
------------------------------------------AA---------AAAAACGTAAGCCCGTCAGATTTAAACGCGAATC-----TCGAAAAGGCCTCGATGGTTTGACGGCTCGGCTGCCAATCGAATTGAATCGTTCGGTTTGTGTGTGAAAA-GT--AAA--AAGTGGCAGGTGAATCGC--GGCGG-GACCCCCTCGTCGCAGCCCCCCTCTCGCTCGCACA--CGCAGCTCCTGCTGCG-GGG--------GAAACAACA-AAAACACCAG-----GA---------AGAAGCGGCTGGGGTGCGAGCGAGATGGAT--A-------------GTGGCGCGGGGGCGGAGAA-A------GGAGAAGAAAGCCGAGGC-GGAGA--AAAATCCAAAATCAAAATCAAA-------AGATTCATCCCTTT-TA-TGCTATG----C--T----TTCCCCATCTCCTTT-------CTCC----------CATCAGCTGTGC-------TTCTCTTTTCTCCA------CCGTTCTTT---------T-TTSizeHit CountTotal NormTotal
No Reads
droEle1
-----------CCAAGCTGTTTATTTAGTCGTCTCGAA-CTCAA---------AAAACCGTAAATCCAT-AGAATTAAACGTGTTTG-----TCGAAAACGCCCAGCTGAATTGACTCCATAGCTGCAATTTGA-------CGTTCGATTTGTG---TAAAA--T-A-TAAATTGTGGCAGGTGAAACAC--G------TC---------------GCCGTCTCGCTCGCACAG----A---CCTCCTTGGTGGC--------AAAACAACA-AAAACACCAG-----AA---------AGAAGCGGCGACGATGTGAGCGAGATTGATTTGA------------TTGG---GG-----GTGAA-G------GG--AA--TAAAGGAGACGGGAGACGAA------AATCAAAA-TCAAA-------AGATTCATCCCTTT-TT-TGC-TTCCTCTCTCT----T---TCATCTCCTTT-------CTC--------CTCCATCAGCTGTGT-------TACTCTTTTTTACA------TTA---------------T-TTSizeHit CountTotal NormTotal
No Reads
droRho1
-------T---CCAAGCTGTTTATTTAGTCGTCTCCAAACTCAA---------AAAAGTGTAAATTCAT-AGAACCAAACGCGATTG-----TCTAAAACGCCCCGATGGTTTGACGGCTAAGCTGCAAATCGA-------CGTGCGGTTTGTG---TAAAGA-T--ATAAATTGTGGCAGGTGAAACACTGG----TGTC-CCCTCA-AACATCGCCCCTCTTGCTCGCACAC----AACTCCTCCTTGG-AGG--------AAAACAACA-AAAACACCAG-----GA---------AGAAGCGGCGATGGTGCGAGCGAGTTGG-------CTGGAAGA--------GTG------GTGAA-G------GG--AG--TAAAGGAGACGGGAGACGAA------AATCAAAA-TCAAA-------AGATTCATCCCTTT-TTCAGC-TTCCTCTCTCT----T---TTATCTCCTTT-------CTCCCATTCTCCTCCATCAGCTGTGT-------TTCTTTTTTCTCCA------TAC---------------T-TTSizeHit CountTotal NormTotal
No Reads
droFic1
-------T---CCAAGCTGTTTATTTAGTCGTCTCGAATCTCAA---------AAAACCGTAAATCCAA-TAAATTAAACGCGATAGAATAGACGAAAACGGCTCGTTAGTTTGACAGCTAAGCTGTGAATCGA-------CGTTCGATTTGTG---CGGAAA-T--ACA--AAGTGGCAGGTGAAACT-------------CCCTCG-CACATCACCCCTCTCGCTCACACGC------CTCCTCCTGCG-AGG--------GCAACAAAAAAAAACACAAG-----GA---------AGAAGCGGTAGAGGTGTGCGCGAGATAAATTTA-------------CTGGCATGG-------GAA-A------AGGGAA--GAAAGGAGACTGGAGA--AAAA-TCA-----AAA-TCATA-------AGATTCATCCCTTT-TTCTGC-CACCTCTCTCTCACTT---TCATCTCCTTT-------CTCCCATACTC-CCCGTCAGCTGTGT-------TTCTCATTTCCCCA------TTGGT-------------T-TTSizeHit CountTotal NormTotal
No Reads
droKik1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGGCTGACGGTACT--------GACG----------CCCCTCTCCCCTTGCTAAC-----CACC-CGCCCCCTCAA-AGA--------ACAACAACG-AACACAACAAAACTGGCAGAAGCAGCAGCAGCAGCCAGGGCGCGAGCGAA----------------------------------------------------GGAGAAAGGGAGAAG---AAA--AAAA-TCAAAGCGACG-CCTTC--CTTTCAGATTCATCCCTTT-CTC--T-TTGCTCTC--T----TTTATCACC---TATCTCCTGTCTGCCATCTT--CTCGTTA----------------------TTTGCAAAAAAGTGGCTATTTT--TTTCTAA-TTSizeHit CountTotal NormTotal
No Reads
droAna3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCTGACGTTTTTTTTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTATSizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 04:54 PM