ID:

dsi_27573

Coordinate:

3l:11513407-11513556 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-13.2	-12.9	-12.9

Flybase annnotation

exon [3l_11512753_11513406_-]; CDS [3l_11512753_11513406_-]; intron [3l_11513407_11516356_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGCTATATTTAAAATGAAAATGCAGTCAGTGCAATCAGCTTTAAATAAACTGCCTATAGACCGAAATAGTTTACTTCATTTGGCCAAATAATTGATTGAATCTGACCTTATTTCGATTTTAACAATGAAAACTACTGATAAATAGAAGTTACGTATACATTTTGTGATTAAATTGTCTTTCTTATATTACTACTTTTTAGTTTGTGCCACTCGCCGTGGGTGTGGTCGCCGTACTCGCCGGCGCCCTGAT ************************************************...........((((((((((...((((.((((........)))).))))...)))..)))))))..........((((((.((.(((((...((((((((((.........))))))..........))))..))))).)).)))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	M053 female body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
...........................................................................................................................................................................................................................GTGTGGTCGCCGTACTCGCCGGCGCC.....	26	0	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................CGTACTCGCCGGCGCCCTG..	19	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................ATACATTTTGTGATTAAATTGT..........................................................................	22	0	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................GGTGTGGTCGCCGTACTCGCC...........	21	0	1	1.00	1	1	0	0	0	0
.......................................TTTAAATAAACTACCTCTTGACC............................................................................................................................................................................................	23	3	5	0.20	1	0	0	0	1	0
..................................................................................................................................................................................................................TCGGCGTGGGTGTGGT........................	16	1	7	0.14	1	0	0	0	0	1
...................................................................................................ATCTGACCTTAGTACGA......................................................................................................................................	17	2	8	0.13	1	0	0	0	1	0
...............................................................................................................................................................TTTTGTGATGAAATTGT..........................................................................	17	1	12	0.08	1	0	0	0	0	1

Anti-sense strand reads

ACGATATAAATTTTACTTTTACGTCAGTCACGTTAGTCGAAATTTATTTGACGGATATCTGGCTTTATCAAATGAAGTAAACCGGTTTATTAACTAACTTAGACTGGAATAAAGCTAAAATTGTTACTTTTGATGACTATTTATCTTCAATGCATATGTAAAACACTAATTTAACAGAAAGAATATAATGATGAAAAATCAAACACGGTGAGCGGCACCCACACCAGCGGCATGAGCGGCCGCGGGACTA ************************************************...........((((((((((...((((.((((........)))).))))...)))..)))))))..........((((((.((.(((((...((((((((((.........))))))..........))))..))))).)).)))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
................................................................................................................................................CTTCAATGCCTAGGTAAAAC......................................................................................	20	2	2	1.50	3	3	0	0	0	0	0	0
..............................................................................................................................................................................................................GGTGAGCGCCACCCACAG..........................	18	2	3	0.67	2	0	2	0	0	0	0	0
................................................................................................................................................CTTCAATGCCTAGGCAAAAC......................................................................................	20	3	6	0.50	3	0	2	0	1	0	0	0
................................................................................................................................................................................................................TGAGCCGCACCCATACCA........................	18	2	6	0.33	2	0	0	2	0	0	0	0
................................................................................................................................................CTCCAATGCCTAGGTAAAAC......................................................................................	20	3	7	0.29	2	0	1	0	0	0	0	1
.................................................................................................................................................TTCAATGCCTAGGCAAAAC......................................................................................	19	3	20	0.20	4	0	2	0	0	0	2	0
.................................................................................................................................................TTCAATGCCTAGGTAAAAC......................................................................................	19	2	6	0.17	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................GAGCCGCACCCATACCA........................	17	2	16	0.13	2	0	0	2	0	0	0	0
................................................................................................................................................CTTCAATGCCTAGGTAAA........................................................................................	18	2	9	0.11	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................GAGAGCCGCACCCATACCA........................	19	3	12	0.08	1	0	0	1	0	0	0	0
................................................................................................................................................................................................TCAAAATCAAACACGGTG........................................	18	2	19	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................TTCAATGCCTATGCAAA........................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0

Generated: 04/24/2015 at 10:24 AM