ID:

dsi_27561

 Coordinate:

x:1216679-1216900 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.2 -35.2 -35.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_27561  x:1216836-1216856 +
  2. x:1217031-1217051 +
  3. x:1217142-1217162 +
  4. x:1217253-1217273 +
  5. x:1217364-1217384 +
  6. node_120034:42-62 +
star
  1. dsi_27561  x:1216712-1216732 +
  2. dsi_27561  x:1216823-1216843 +
  3. x:1217018-1217038 +
  4. x:1217129-1217149 +
  5. x:1217240-1217260 +
  6. x:1217351-1217371 +
  7. node_120034:29-49 +
  8. node_13867:29-49 +

Sense Strand Reads

GCTGAGAAGTCTAAGGAAGAATCACTGTTGGCCTCTAAGGAAGCTTCCAGGCCTACTTCCGTTGCAGAAAGTGCTAAGGACGAAGGTGAGAAATCTAAGGAAGAATCAAGGAGAGAATCGGTGGACGAAAAATCTCCTTTGCCCTCCAAGGAAGCTTCCAGACCAGCTTCCGTTGCAGAAAGTGCTAAGGACGAAGGTGAGAAATCTAAGGAAGAATCTAGGAGAGAATCAGTGGCCGAAAAATCTCCTTTGCCCTCCAAGGAAGCTTCCAGACCAGTTTCCGTTGCAGAAAGTGTTAAGGACGAAGATGAGAAGTCTAAGG
***********************************************************************************((((.....))))...........(((((((...(((.....)))....)))))))....((((..(((..((((((((.((.((((.((((((.....)))....))))))).)).....)))..)))))..))).))))....********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................CTCAACGAGAGACTCGGTG....................................................................................................................................................................................................... 19 3 11 35.00 385 309 62 0 1 0 13 0 0 0 0 0
.........................................................................................................TCAACGAGAGACTCGGTG....................................................................................................................................................................................................... 18 2 4 8.75 35 26 7 1 0 0 1 0 0 0 0 0
..........................................................................................................CAACGAGAGACTCGGTGG...................................................................................................................................................................................................... 18 2 4 6.25 25 21 4 0 0 0 0 0 0 0 0 0
........................................................................................................CTCAACGAGAGACTCGGTGG...................................................................................................................................................................................................... 20 3 2 4.50 9 8 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TCAACGAGAGACTCGGTGG...................................................................................................................................................................................................... 19 2 2 2.50 5 3 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................AGTGTTAAGGACGAAGATGAGAA........ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.CTGAGAAGTCTAAGGAAG............................................................................................................................................................................................................................................................................................................... 18 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TTAAGGACGAAGATGAGAAGT...... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGTTCCCGTTGCAGAAAGTG........................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................GTTCCAGAAGGTGTTAAGGAC................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................AATCACTGTTGGCCTCTAA............................................................................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................TAAGGGAGCTTCCAGG............................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................CAAGATGAGAATTCTAAGG 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
........GTCTAGGGAAGAATCACTGTTGGCCT................................................................................................................................................................................................................................................................................................ 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TCAAGGAGAGTAGCGGTTGACG................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
....................................................CTACGTCCGTTGGAGAAA............................................................................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................AGATGAGTATTCTAAGG 17 2 18 0.17 3 0 0 0 0 0 0 3 0 0 0 0
.......................................................................................................................................................................................................AGGAATGTAAGGAAGTATCTAG..................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................AAGGAAGAATCTAGGAGAGAA.............................................................................................. 21 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................AGGATGAGAATTCTAAGG 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................AGGTGAGAAATCTAAGGAAGA.......................................................................................................................................................................................................................... 21 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...................................................CCTACTCCCGTTGCA................................................................................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................AGGTGAGAAATCTAAGGAAGA........................................................................................................... 21 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AAGATGAGAATTCTAA.. 16 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TCAAGATGAGAATTCTAAGG 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................CTCAATGAGAGACTCGGTG....................................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
..............GGAAGAATCAATGTT..................................................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................AAGCTAATGAAGAATGTAGGA................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................TCAACGAGAGACTCGGT........................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................AAGGTGGGAACTCTAAG............................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGGTGGGAACTCTAAG................................................................................................................ 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CCAGTTTCCGTTGAA.................................. 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................AGAAATCTAATGGAGGATCT....................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................AAGGACGAAGATAAG.......... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATGGTGGGAACTCTAAGGA.............................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..............GGAAGAATCACTGTA..................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................ATGGTGGGAACTCTAAGGA............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CGACTCTTCAGATTCCTTCTTAGTGACAACCGGAGATTCCTTCGAAGGTCCGGATGAAGGCAACGTCTTTCACGATTCCTGCTTCCACTCTTTAGATTCCTTCTTAGTTCCTCTCTTAGCCACCTGCTTTTTAGAGGAAACGGGAGGTTCCTTCGAAGGTCTGGTCGAAGGCAACGTCTTTCACGATTCCTGCTTCCACTCTTTAGATTCCTTCTTAGATCCTCTCTTAGTCACCGGCTTTTTAGAGGAAACGGGAGGTTCCTTCGAAGGTCTGGTCAAAGGCAACGTCTTTCACAATTCCTGCTTCTACTCTTCAGATTCC
**********************************************************************************************((((.....))))...........(((((((...(((.....)))....)))))))....((((..(((..((((((((.((.((((.((((((.....)))....))))))).)).....)))..)))))..))).))))....*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................................................................................................................................................................AGGCAACGTCTTTCACAATTCCTGCTT................ 27 0 2 1.50 3 3 0 0 0 0
...........................................................................................................................................................................................................................................................................AGGTCTGGTCAAAGGCAACGTCTTTCACAA......................... 30 0 1 1.00 1 0 1 0 0 0
..........................................CGAAGGTCCGGATGAAGGCAACGTCTT............................................................................................................................................................................................................................................................. 27 0 2 1.00 2 0 2 0 0 0
..............................................................................................................................................................................................................................................................................TATGGTCAAAGGCAACGT.................................. 18 1 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................................................................................................................GTCTGGTCAAAGGCAACGTCT................................ 21 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGGCAACGTCTTTCACAATTCCTGCTTCT.............. 29 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................CGGGAGGTTCCTTCGAAGGTCTGGTCA............................................ 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................CGAAGGTCTGGTCAAAGGCAACGTCT................................ 26 0 1 1.00 1 1 0 0 0 0
CGACTCTTCAGATTCCTTCTT............................................................................................................................................................................................................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0
............................................................................................................................................................................................................AGATTCCTTCTTAGATCCTCTCTTAGT........................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.............................................AGGTCCGGATGAAGGCAACGTCTTT............................................................................................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................AACGGGAGGTTCCTTCGAAGGTCTGGT.............................................. 27 0 8 0.38 3 3 0 0 0 0
..........................................................................................................................................AACGGGAGGTTCCTTCGAAGGTCTGGT............................................................................................................................................................. 27 0 8 0.38 3 3 0 0 0 0
..........................................................................................................................................................................................................................................................ACGGGAGGTTCCTTCGAAGGTCTGGT.............................................. 26 0 8 0.25 2 0 2 0 0 0
...........................................................................................................................................ACGGGAGGTTCCTTCGAAGGTCTGGT............................................................................................................................................................. 26 0 8 0.25 2 0 2 0 0 0
....................................................................................................................................AGAGGAAACGGGAGGTTCCTTCGAAGGT.................................................................................................................................................................. 28 0 9 0.22 2 1 0 1 0 0
...................................................................................................................................................................................................................................................AGAGGAAACGGGAGGTTCCTTCGAAGGT................................................... 28 0 9 0.22 2 1 0 1 0 0
.........................................................................................................................................................CGAAGGTCTGGTCGAAGGCAA.................................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0
............................................................................................................................................................AGGTCTGGTCGAAGGCAACGTCTT.............................................................................................................................................. 24 0 6 0.17 1 0 1 0 0 0
............................................................................................................................................................AGGTCTGGTCGAAGGCAACGTCTTT............................................................................................................................................. 25 0 6 0.17 1 0 1 0 0 0
........................................................................................................................................................TCGAAGGTCTGGTCGAAGGCAACGT................................................................................................................................................. 25 0 6 0.17 1 1 0 0 0 0
............................................................................................................................................CGGGAGGTTCCTTCGAATGTCTGGTCGA.......................................................................................................................................................... 28 1 6 0.17 1 0 0 0 1 0
.......................................................................................................................................................................................................................................................................................AGGCAACGACTTTCACAAA........................ 19 2 6 0.17 1 1 0 0 0 0
.....................AGTGATAGCCAGAGATTCCT......................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0
...............................................................CGTCTTTCACGATTCCTGCTTCCAC.......................................................................................................................................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0
..........................................................................................................................................................................................TTCCTGCTTCCACTCTTTAGATTCCT.............................................................................................................. 26 0 8 0.13 1 1 0 0 0 0
...........................................................................TTCCTGCTTCCACTCTTTAGATTCCT............................................................................................................................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................................................................CGTCTTTCACGATTCCTGCTTCCAC........................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0
........................................................................................................................................................................AGGCAACGTCTTTCACGATTCCTGCTT............................................................................................................................... 27 0 8 0.13 1 0 0 0 1 0
.........................................................AGGCAACGTCTTTCACGATTCCTGCTT.............................................................................................................................................................................................................................................. 27 0 8 0.13 1 0 0 0 1 0
......................................CCGTCGAAGGTCCGCATGCA........................................................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0
..........................................................................................................................................................................................................................................CGGCTTTTTAGAGGAAACGGGAGGTT.............................................................. 26 0 9 0.11 1 1 0 0 0 0
..............................................................................................................................................................................................................................................TTTTTAGAGGAAACGGGAGGTTCCT........................................................... 25 0 11 0.09 1 1 0 0 0 0
.........................................................................................................................................AAACGGGAGGTTCCTTCGAAG.................................................................................................................................................................... 21 0 11 0.09 1 0 0 1 0 0
...............................................................................................................................TTTTTAGAGGAAACGGGAGGTTCCT.......................................................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0
....................................................................................................................................AGAGGAAACGGGAGGTTCCTT......................................................................................................................................................................... 21 0 11 0.09 1 1 0 0 0 0
........................................................................................................................................................................................................................................................AAACGGGAGGTTCCTTCGAAG..................................................... 21 0 11 0.09 1 0 0 1 0 0
...................................................................................................................................................................................................................................................AGAGGAAACGGGAGGTTCCTT.......................................................... 21 0 11 0.09 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGGCAACGACTTTCAAAA......................... 18 2 14 0.07 1 0 1 0 0 0
..........................................CGAAGGTCCGAATGAT........................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................AGGCAACGTCTCTCA........................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................CTTCGAAGGTCAGGTC............................................................................................................................................................ 16 1 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................AGGCAACATCTTTCAAA.......................... 17 2 20 0.05 1 0 0 0 0 1
.........................................................AGGCAACGTCTCTCA.......................................................................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................CTTCGAAGGTCAGGTC............................................. 16 1 20 0.05 1 0 0 1 0 0
..........................................................................................TTTAGGTTTCTTCTTAGT...................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 05:08 AM