ID:

dsi_27556

 Coordinate:

3r:4511061-4511210 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.5 -5.2 -5.2

Flybase annnotation

exon [3r_4510966_4511060_-]; CDS [3r_4510966_4511060_-]; intron [3r_4511061_4511550_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTAGCCTCCGCTCCGACTTAGATCCAGCAGCTCCAGCTAGAATACAACGCAGTGCTAGGCCATCGAGTAGTTTAAGTGCTCTTAATCACGTCCCCCAACTCTAGCTAACCCCACAGATCTAGGCCAAAATCGAACTGAATTGAATTTATGGATTGTAAACTGTTGCTAATGTAACTACCTGCCGTAATCCAATACCTAGGTGCCAGCCATTTCATTGGCCTACGAACATGCTGAAGCCGATATTATGAA
**********************************************************************************************************.......((((.......((((((((((......))).)))).)))........))))..........**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
......................................................................................................................................................................................................................ATTGGCCTACGAACATGCTGAAGCC........... 25 0 1 30.00 30 14 15 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTACGAACATGCTGAAGCC........... 19 0 1 14.00 14 9 5 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CATTGGCCTACGAACATGCTGAAGCC........... 26 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGGCCTACGAACATGCTGAA.............. 22 0 1 6.00 6 3 1 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACGAACATGCTGAAGCC........... 18 0 1 5.00 5 1 0 4 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CATTGGCCTACGAACATGCTGAAGC............ 25 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGGCCTACGAACATGCTGAAGCCGAT........ 28 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCATTGGCCTACGAACATGCTGAAGC............ 27 0 1 3.00 3 0 0 0 0 2 1 0 0 0 0
...........................................................................................................................................................................................................................CCTACGAACATGCTGAAGCCG.......... 21 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CATTGGCCTACGAACATGCTGA............... 22 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGGCCTACGAACATGCTGAAGC............ 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGGCCTACGAACATGCTGA............... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGGCCTACGAACATGCTGAAGC............ 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGCCTACGAACATGCTGA............... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCTACGAACATGCTGAAGCCGAT........ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTTCATTGGCCTACGAACATGCTGAA.............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAACCCCACAGATCTAGGCC............................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTGGCCTACGAACATGCTGA............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTTCATTGGCCTACGAACATGCTGAAGC............ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CATTGGCCTACGAACATGCTGAA.............. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTTCATTGGCCTACGAACATGCTGAAG............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................AACCCCACAGATCTAGGCC............................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCCTACGAACATGCTGAAGCCG.......... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTACGAACATGCTGAAGCCGAG........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTACGAACATGCTGAAGCCGAT........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................AGCTAACCCCACAGATCTAGGC............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCATTGGCCTACGAACATGCTGAA.............. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................AACCCCACAGATCTAGGC............................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGAACATGCTGAAGC............ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................CTCTAGCTAACCCCACAGATCTAGGC............................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTACGAACATGCTGAAGC............ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGCCTACGAACATGCTGAAGCCGATA....... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................ATCTAGGCCAAAATCGAACTGAATTGA.......................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CATTGGCCTACGAACATGCTTAAGCC........... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACGAACATGCTGAAGCCGATATTATGA. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................CTAGCTAACCCCACAGATCTAGGC............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATTGTAAACTGTTGCTAATGTA............................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGCCTACGAACATGCTGAAGCC........... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCCTACGAACATGCTGAAGCC........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTACGAACATGCTGAAGCCG.......... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGCCTACGAACATGCTGAAGCCG.......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................CTATGGATTGTAAACTG....................................................................................... 17 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................CCAAAATCGAACTGAATTGAATTT...................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTACGAACATGCTGAAGCCGA......... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................ATTGTAATCTGTTGCTAA................................................................................ 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................TCTATGGATTGTAAACT........................................................................................ 17 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................CCTATGGATTGTAAACTG....................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................CTATGGATTGTAAACT........................................................................................ 16 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................CGAGCAAGCTTAAGCCGATA....... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................TATGGGTTGTAAACT........................................................................................ 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................TGAATTGAACTTATGGACTGG............................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
............................................................................................CCCCCAACTGTAGTTAAGC........................................................................................................................................... 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGAGCAAGCTTAAGCCGA......... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................GAAATTATGGATTGTATGCT........................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................CTATGGATTGTAAACTT....................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................CTTATGGGTTGTAAACT........................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................ATGGATTGTAAACTTCT..................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
GCTAGCCTCCGGTCGG.......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................CTATGGGTTGTAAACT........................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................CTATGGATTGTAAACTTCT..................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................CTCTGGATTGTAAACT........................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGATCGGAGGCGAGGCTGAATCTAGGTCGTCGAGGTCGATCTTATGTTGCGTCACGATCCGGTAGCTCATCAAATTCACGAGAATTAGTGCAGGGGGTTGAGATCGATTGGGGTGTCTAGATCCGGTTTTAGCTTGACTTAACTTAAATACCTAACATTTGACAACGATTACATTGATGGACGGCATTAGGTTATGGATCCACGGTCGGTAAAGTAACCGGATGCTTGTACGACTTCGGCTATAATACTT
****************************************************************************.......((((.......((((((((((......))).)))).)))........))))..........********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 GSM343915
embryo
 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body
.................................GGTTGATCTGATGTTGCCT...................................................................................................................................................................................................... 19 3 12 22.17 266 175 78 11 0 0 0 0 1 0 0 1
.................................GGTCGATCTGATGTTGCCT...................................................................................................................................................................................................... 19 2 1 17.00 17 15 2 0 0 0 0 0 0 0 0 0
.....................................GATCTTATGTTGCCT...................................................................................................................................................................................................... 15 1 2 3.00 6 5 1 0 0 0 0 0 0 0 0 0
..................................GTCGATCTGATGTTGCCT...................................................................................................................................................................................................... 18 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
....................................CGATCTGATGTTGCCT...................................................................................................................................................................................................... 16 2 20 2.15 43 29 5 8 1 0 0 0 0 0 0 0
...............................GATGTCGATCTTATGTT.......................................................................................................................................................................................................... 17 1 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0
.................................GGTTGATCTTATGTTGCCT...................................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................GATGTCGATCTTATGT........................................................................................................................................................................................................... 16 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0
...............................GATGTCGATCTTATGTTTCG....................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....GGAGCCGAGGCTGAACCTAGAT............................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................AATCTAGGTCGTCGAGGAC..................................................................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................CGAGTAGGGTGTCTAGATC............................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................AAAGTAACCGGATGC......................... 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..............................CGGGGTCGATCTTATGTTAGGT...................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................GGTCGATCTGATGTTG......................................................................................................................................................................................................... 16 1 4 0.50 2 0 0 1 0 0 0 0 0 1 0 0
..............................CGATGTCGATCTTATG............................................................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.................................GGTTGATCTGATGTTGC........................................................................................................................................................................................................ 17 2 9 0.33 3 1 1 1 0 0 0 0 0 0 0 0
...............................GATGTCGATCTTATGTTTC........................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.................................GGTAGATCTGATGTTGCCT...................................................................................................................................................................................................... 19 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...............................GATGTCGATCTTATGGTGCT....................................................................................................................................................................................................... 20 3 14 0.21 3 0 0 2 0 0 0 0 0 1 0 0
.....................................GATCTGATGTTGCGT...................................................................................................................................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...................................TCGATCTGATGTTGCCT...................................................................................................................................................................................................... 17 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................TGGTCGATCTGATGTTGCCT...................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................GGTCGATCTGATGTT.......................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TACTGCAGGGGGTGGAGGTCG................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................TTTGTGCAGGAGGTCGAGAT.................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..................................GTTGATCTGATGTTGC........................................................................................................................................................................................................ 16 2 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0
..................................GTAGATCTGATGTTGCCT...................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGATAGACTTAACTAAAATA.................................................................................................... 21 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..................................GTGGATCTGATGTTGCCT...................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...........................................ATGTTGGGTCCAGATCCG............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 09:05 AM