ID:

dsi_27548

 Coordinate:

3l:8100989-8101138 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.2 -6.9 -6.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAATGCACGTTGCGTAAATACTTTTGACCACCTCTGTATGTCTATAAAAAAACAAAATAAAATGAATTCAATATTATCTGACGGAAGTCATAAAAATGTAAGTCGAGATAATCCAACGCTATGCAGTCAGTCATTTTTGCAAATTTATCGTTATGTATGTACATTATGTACCTAAAAATAAATGTACCCTTATCTTTTAGGAAGTTACTTGGATCGCGTCAAGCTAAATGTGCCCGATGAATTTGACCTG
******************************************************************......((((((((((......(((....)))...))).)))))))...............*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR902008
ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O002
Head
 O001
Testis
.......................................................................................................................................................................................................TGAAGTTACTTGGATCGCGTCAAGCTAAA...................... 29 1 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTCAATATTATCTGACGGAAGTCATA.............................................................................................................................................................. 26 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAAGTTACTTGGATCGCGTCAAGC.......................... 25 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAAGTTACTTGGATCGCGTCAAGCTA........................ 27 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGAAGTTACTTGGATCGCGTCAAGC.......................... 27 0 1 4.00 4 0 1 0 0 0 0 1 2 0 0 0 0
..........................................................................................................................................................................................................AGTTACTTGGATCGCGTCAAGCTAAA...................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGGATCGCGTCAAGCTAAATGTGC................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............CGTAAATACTTTTGACCACCT......................................................................................................................................................................................................................... 21 0 2 2.00 4 0 0 0 0 0 4 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTTGGATCGCGTCAAGCTAAATG.................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
......ACGTTGCGTAAATACTTTTGA............................................................................................................................................................................................................................... 21 0 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0
..............TAAATACTTTTGACCACCTCTG...................................................................................................................................................................................................................... 22 0 3 1.33 4 0 0 3 1 0 0 0 0 0 0 0 0
........................................................................................................................ATGCAGTCGGTCATTTT................................................................................................................. 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TCCAACGCTATGCAGT........................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATCGCGTCAAGCTAAATG.................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAAGTTACTTGGATCGCGTC.............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAAGTTACTTGGATCGCGTCAAGCTAA....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTGGATCGCGTCAAGCTAAAT..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TAAAATGAATTCAATATTATCTGACGG...................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGCTATGCAGTCAGTCATTTTTGCAAA........................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GCAAATTTATCGTTATGTATG........................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................AAACAAAATAAAATGAAT....................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.....CACGTTGCGTAAATACTTTTG................................................................................................................................................................................................................................ 21 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................AAAATGAATTCAATATTATCTGACGGA..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTTAGGAAGTTACTTGGATCGC................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTTACTTGGATCGCGTCAAGCTA........................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTTATCGTTATGTATGTACATTATG.................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................GTAAGTCGAGATAATC......................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TAAAATGAATTCAATATTATCTGACGGA..................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................TAATCCAACGCTATGCAGTCAGTCAT.................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................TGTATGTCTATAAAATAACAAAATAAAA............................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGCTAAATGTGCCCGATGAATT....... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGCGTCAAGCTAAATGTGCCCG.............. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................TGAAGTTACTTGTATCGCGTCAAGC.......................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TAAAATGAATTCAATATT............................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................TCCAACGCTATGCAGTCAGTCATT................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAAGCTAAATGTGCCCGATGAAT........ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................TGAATTCAATATTATCTGACGGAAGT.................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......ACGTTGCGTAAATACTTTTGACCACC.......................................................................................................................................................................................................................... 26 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................TACACACCTCTGTATGTCTATAAAA......................................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...TGCACGTTGCGTAAATACTTTTGACCACC.......................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................AGTTACTTGGATCGCGTC.............................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTTGGATCGCGTCAAGC.......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TAGGAAGTTACTTGGATCGCGTC.............................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AACGCTATGCAGTCAGTCA..................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTTAGGAAGTTACTTGGATCGCGT............................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GTTACTTGGATAGCGTC.............................. 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCTGACGGAAGTCATA.............................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................TATAAAATAACAAAATAAAATGAATT...................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACTTGGATCACGTCAAGCTAAATGTG.................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCTTTTAGGAAGTTACTTGGATCGCGT............................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................GAAGTTACTTGGATCGCGT............................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................ATGAATTCAATATTATCTGACGGAAGT.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................ATTTTGACCACCTCTGTATGT................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................TAACAAAATAAAATGAATTCAATATT............................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTTAGGAAGTTACTTGGATCGCGTC.............................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGTACCCTTACCTGTTAGGAC............................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGGATCGCGTCAAGCTAAATGTGCC................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..............TAAATACTTTTGACCACCTCTGT..................................................................................................................................................................................................................... 23 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
..............TAAATACTTTTGACCACCTCT....................................................................................................................................................................................................................... 21 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
.............GTAAATACTTTTGACCACCTCT....................................................................................................................................................................................................................... 22 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0
.......TGTTGCGTAAATACTTTTGACCA............................................................................................................................................................................................................................ 23 1 3 0.67 2 0 0 0 0 0 0 2 0 0 0 0 0
........................................................................................................................................................................................................................................CCCGACGAATTTGACATG 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....CACGTTGCGTAAATACTTTTGT............................................................................................................................................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........TGCGTAAATACTTTTGACC............................................................................................................................................................................................................................. 19 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........TGCGTAAATACTTTTGACCACC.......................................................................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
.......CGTTGCGTAAATACTTTTGACCACC.......................................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
................................TCTGTTTGACTATAAAAAAAAAAAA................................................................................................................................................................................................. 25 3 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0
................AATACTTTTGACCACCTCTGT..................................................................................................................................................................................................................... 21 0 9 0.33 3 0 1 0 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCCCGATGAATTTGAA... 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAATTGCCCGATGAATTTGAC... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TAAATGTGTCCGATGA.......... 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................TAGGTCTATAAAAAAAAAAAA................................................................................................................................................................................................. 21 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
..................TACTTTTGACCACCTCTGTAT................................................................................................................................................................................................................... 21 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................TCTGACGGATGATATAAAAA.......................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................TCTGTCTATAAAAAAA...................................................................................................................................................................................................... 16 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................CTGTATGTCTAAGAAAAA....................................................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
................................TCAGTATGTCTATTAAAA........................................................................................................................................................................................................ 18 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TGTAAGTCTGTAAAAAAA...................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................GTATGTCTAAAAAAAA....................................................................................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TCTAAGTCTGTAAAAAAAC..................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTACGTGCAACGCATTTATGAAAACTGGTGGAGACATACAGATATTTTTTTGTTTTATTTTACTTAAGTTATAATAGACTGCCTTCAGTATTTTTACATTCAGCTCTATTAGGTTGCGATACGTCAGTCAGTAAAAACGTTTAAATAGCAATACATACATGTAATACATGGATTTTTATTTACATGGGAATAGAAAATCCTTCAATGAACCTAGCGCAGTTCGATTTACACGGGCTACTTAAACTGGAC
***************************************************************************************************************************......((((((((((......(((....)))...))).)))))))...............****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O001
Testis
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...................................................................................................................TGCGATACGTCAGTCAGTGAA.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACATGGGAATAGAAAAT................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.........AACGCATTTATGAAAACTGGT............................................................................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0 0
..........ACGCATTTATGAAAACTGGT............................................................................................................................................................................................................................ 20 0 2 0.50 1 0 0 0 0 1 0 0 0
.....................................................................................................................CCATACGTCAGTCAGAGAAAA................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................GGATTCTTATTTGCAAGGGAA........................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0
.......................................................................................................................ATACGTCAGTCAGAGAAAA................................................................................................................ 19 2 10 0.20 2 0 0 2 0 0 0 0 0
......................................................................................................................TATACGGCAGTCAGTAAACAC............................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0 0
..................ATGAAAACTGGTGGAGACAT.................................................................................................................................................................................................................... 20 0 9 0.11 1 0 0 0 0 0 1 0 0
........................................................................................................................TACGGCAGTCAGTAAACACT.............................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 1 0 0
...................TGAAAACTGGTGGAGAC...................................................................................................................................................................................................................... 17 0 11 0.09 1 0 0 0 0 0 0 0 1
...............................................................................................................AGGTCGCGATACGCCAG.......................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 1 0
......................................................................................................AGCCGTATTAGGTTGC.................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:40 AM