ID:

dsi_27499

 Coordinate:

4:285701-285850 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5 -7.4 -7.1 -7.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATGGCTATTAAAATATTTGCTTTTATCGAAACAGTATGTTAAAACAAAGGTGAATGCGCCATATTTTTTTGATTAAACTTTTAACTCTAAAGAGGCAAACTTAAATTTATTAAGCTCATAAATTCAAATGTGCATGTATAGTAGTAAGCGATTTCGAAAATGTAACATTATTTATATAAATTAGTTTTTTTCCAAAACCTTATAAGAACACCCTATAGAAAGTTAACCAATAGTTCTCTAACTATAATG
********************************************************************((..............((((((.....(((......(((((((.......)))))))......))).....))).)))....))************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 O002
Head
 GSM343915
embryo
 M023
head
...........................................................................................................................................................................................................TAAGAACACCCTATAGAAAGTTAACCAA................... 28 0 1 10.00 10 3 4 0 0 0 0 0 2 1 0 0 0 0 0
............................................................................................................................TCAAATGTGCATGTATAGTAGTAAGCGA.................................................................................................. 28 0 1 8.00 8 6 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TAACCAATAGTTCTCTAACT...... 20 0 1 6.00 6 0 0 5 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AACCAATAGTTCTCTAACT...... 19 0 1 6.00 6 0 0 4 0 0 2 0 0 0 0 0 0 0 0
....................................................................TTTGATTAAACTTTTAACTCTAAAGA............................................................................................................................................................ 26 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAGTTAACCAATAGTTCTCTAACT...... 24 0 1 5.00 5 0 1 2 0 2 0 0 0 0 0 0 0 0 0
......................TTTATCGAAACAGTATGTTAAAACAAAGG....................................................................................................................................................................................................... 29 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTTGATTAAACTTTTAACTCTAAAGAGGC......................................................................................................................................................... 29 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTATAGTAGTAAGCGATTTCGAAAA......................................................................................... 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTCGAAAATGTAACATTATTTATA......................................................................... 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAAGCGATTTCGAAAATGTAACATTATT............................................................................. 28 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCCAAAACCTTATAAGAACACCCTATAGA.............................. 29 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAAGCGATTTCGAAAATGTAACATTA............................................................................... 26 0 1 3.00 3 2 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................TGTGCATGTATAGTAGTAAGCGATTTCGAA........................................................................................... 30 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
................TTTGCTTTTATCGAAACAGTATGTTAA............................................................................................................................................................................................................... 27 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0 0 0 0
.................TTGCTTTTATCGAAACAGTATGTTAA............................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TATAGAAAGTTAACCAATAGTTCTCTAAC....... 29 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAAAACCTTATAAGAACACCCTATAGA.............................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........TAAAATATTTGCTTTTATCGAAACAGTA..................................................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATCGAAACAGTATGTTAAAACAAAGA....................................................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATAAGAACACCCTATAGAAAGTTAACCA.................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTATAGTAGTAAGCGATTTCGAA........................................................................................... 24 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................TTTATCGAAACAGTATGTTAAAACAAAGA....................................................................................................................................................................................................... 29 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATAAGAACACCCTATAGAAAGTTA........................ 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................AGCGATTTCGAAAATGTAACATTATT............................................................................. 26 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................TAGTAAGCGATTTCGAAAATGTAACA.................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATAAGAACACCCTATAGAAAGTTAACCAA................... 30 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GCATGTATAGTAGTAAGCGATTTCGAAAA......................................................................................... 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTTTATCGAAACAGTATGTTAAAACA........................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................AACCAATAGTTCTCTAAC....... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATAAGAACACCCTATAGAAAGTT......................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTAACCAATAGTTCTCTAACC...... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................AGATTAAACTTTTAACTCTAAAGAGGC......................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
CATGGCTATTAAAATATTTGCT.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........TTAAAATATTTGCTTTTATCGAAACAG....................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................TGCTTTTATCGAAACAGTATGTTAA............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TATAGAAAGTTAACCAATAGTTCTCT.......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AAACTTTTAACTCTAAACAGGCAAACTT................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................TTTTGATTAAACTTTTAACTCTAAAGA............................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TATTTGCTTTTATCGAAACAGT...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TCTAAAGAGGCAAACTTAAATTTAA........................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................TAGTAAGCGATTTCGAAAATGTAACAT................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TTTTGATTAAACTTTTAACTCTAAAA............................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACCAATAGTTCTCTAACT...... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTATATAAATTAGTTTTTTTCCAA...................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTTTTGATTAAACTTTTAACTCTAAAGA............................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTCAAATGTGCATGTATAGTAGTA....................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGAAAGTTAACAAATAGTTCTCTA......... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................CCCTATAGAAAGTTAACCAATAGTTCT............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAGTAGTAAGCGATTTCGAAAATG....................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................TTTTATCGAAACAGTATGTTGA............................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TAGCGAAACAGTATGTTAAAACAAAGG....................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CAAATGTGCATGTATAGTAGTAAGCGA.................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TAACTCTAAAGAGGCAAACTTAAAT............................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACCTTATAAGAACACCCTATAGA.............................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATTAGTAAGCGATTTCGAAAATGC...................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAGTAGTAAGCGATTTCGAAAATGTA..................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AACCAATAGTTCTCTAACC...... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................AAAACAAAGGTGAATGCGCCATA.......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTCAAATGTGCATGTATAGTAGTAAGCGA.................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCGATTTCGAAAATGTAACA.................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TTAAAACAAAGGTGAATGCGCC............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................TTGCTTTTATCGAAACAGTATGTTAAAA............................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTATAGTAGTAAGCGATTTCGAAAATGTA..................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTAAACTTTTAACTCTAAAGAGGCAAACT.................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TATAGTAGTAAGCGATT................................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................TCGAAACAGTATGTTAAAACAAAGA....................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTTCCAAAACCTTATAAGAACACCC.................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTTAACCAATAGTTCTCTAACT...... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................TGTTAAAACAAAGGTGAAT.................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................TGTGCATGTATAGTAGTAAGCGATTT............................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................TATCGAAACAGTATGTTAAAACAAAGA....................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AAGGTGAATGCGCCATATT........................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTCGAAAATGTAACATTATTTATA......................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TAAACTTTTAACTCTAAAGAGGCAAACTT................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................TATCGAAACAGTATGTTAAAACAAAGG....................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GTAGTAAGCGATTTCGAAAA......................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................TTTTTTGATTAAACTTTTAACTCTAAAGA............................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACAGTATGTTAAAACAAAG........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................TGTGCATGTATAGTAGTAAG..................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GTATAGTAGTAAGCGATTTCCAAAA......................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................TGCGCCATATTTTTTTGATTAAACT.......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TGTTAAAACAAAGGTGAATGCGCCA............................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TTTGATTAAACTTTTAACTCTAAA.............................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AATGTGCATGTATAGTAGTAAGC.................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................AACTTTTAACTCTAAAGAGGCAAACT.................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AAAATATTTGCTTTTATCGAAA.......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCGCCATATTTTTTTGATTAAACTT......................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................TTTGATTAAACTTTTAACTCTAAAGAGGCA........................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........TTAAAATATTTGCTTTTATCGAAACAGTA..................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATGTGCATGTATAGTAGTAAGCGATT................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CACCCTATAGAAAGTTAACCAATAGTTCT............ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TAAACTTTTAACTCTAAAGAGGCAAAC..................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................TAAACTTTTAACTCTAAAGAGGCAAACT.................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTTAACTCTATAGGGGCAA....................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................TTCTCGAAACTGTATGTT................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................ATCGAAACCGTCTGTTA................................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................CCAACACCTTATGAGAA......................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTACCGATAATTTTATAAACGAAAATAGCTTTGTCATACAATTTTGTTTCCACTTACGCGGTATAAAAAAACTAATTTGAAAATTGAGATTTCTCCGTTTGAATTTAAATAATTCGAGTATTTAAGTTTACACGTACATATCATCATTCGCTAAAGCTTTTACATTGTAATAAATATATTTAATCAAAAAAAGGTTTTGGAATATTCTTGTGGGATATCTTTCAATTGGTTATCAAGAGATTGATATTAC
**************************************************************************************************((..............((((((.....(((......(((((((.......)))))))......))).....))).)))....))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 M023
head
 M025
embryo
............................................................................................................................................................................................................TTCTTGTGGGATATCTTTCAA......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TACACGTACATATCATCATTC..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTCGCTAAAGCTTTTACATTG................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTGGAATATTCTTGTGGG.................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATTTAAGTTTACAGGTGCA................................................................................................................ 19 2 4 0.50 2 0 0 0 1 0 1 0 0 0 0 0
...........TTTCTCAACGAAAACAGCTTTGT........................................................................................................................................................................................................................ 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.....................AAAATTGCTTTGTCAT..................................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................TATGTAAGTTTACAGGTGCA................................................................................................................ 20 3 17 0.24 4 0 0 0 2 0 2 0 0 0 0 0
...........................................................................................................................................................................................AAAAAGGTTTTGGTATAT............................................. 18 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GTATGTCTTTCTATTGGTTATC................ 22 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................AAAAAGGTTTTGTAATAT............................................. 18 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
................................................................AAAAAAACTAATTTCAAAATTA.................................................................................................................................................................... 22 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................TTGACAATTGGGATTTC............................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................CAAAAAAAGGGTTGGGAA................................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................AAAAAAAGGTTGTGCAAT............................................... 18 2 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................TCGCGAAAGCGTTTACA...................................................................................... 17 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................AAAAAAAAGGTTATGGAA................................................ 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TTGTGGCATATCTTAC........................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
............................................TGTTTCCGCTTAGGCAGTA........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................TCGCTCGAGCTATTACATT.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................GACATGGTAAGAAATATATT...................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:285651-285900 - dsi_27499 CATGGCTATTAAAAT---------ATT----------TGCTTTTATCGAAACA----------GTATG-----TTAAAACAAAGGTGAATGCGCCATATTTTTTT-GATTAAACTTTTAACTCTAAAGAG------------GCAAACTTAAATTTATTAAGCTCATAAATTCAAATGTGCATGTATAGTAGTAAGCGATTTCGAAAATGTAACATTA-TTTATAT----AAATTAGTTTT-TTTCCAAAACCTTATAAGA-ACACCCT---ATAGAAAGTTAACCAATA--------------------------GTTCTCTAACTATAATG
droSec2 scaffold_30:89221-89471 - CATGGCTATTAAAAT---------ATT----------TGCTTTTATCGAAACA----------GTATG-----TTAAAACAAAGGTGAATGCGCCATATTTTTTT-GATTAAACTTTTAACTCTAAAGAG------------GCAAACTTAAACTTATTAAGCTCATAAACTCAAATGTGCATGTATAGTAGTAAGCGATTTCGAAAATGTAACATTA-TTTATAT----AAATTAGTTTTTTTTCCAAAACCTTATAAGA-ACACCCT---ATAGAAAGTTAACCAATA--------------------------GTTCTCTAACTATAATG
dm3 chr4:351852-352083 - TGTGGCTATTAAAAT---------ATTTGTATCCACATGCTTATTTCGAAACA----------GTATG-----TTAAAACAAAGGTGAATGCGCGATATTTTTTT-GATTAAACTTTTAACTCTAAAGAG------------GCAAACTTAAATTTATTAATCTCATAAATACAAATGTGCATGTATAG---TAAGCGATTTCGAAAATGTAACATTA-TTTATAT---------------------------------GA-ACACCCAATTATAGAAAGTTAACGAATA--------------------------GTTCTCTAACTATAATG
droEre2 scaffold_4512:953998-954241 + AATGTTT-------------------------------GTTTTTA--GAAAAT----------ATATG--AAATCAAAAAAAAAGTGTATGCGCGATCATTTTTC-AATTAAACTTTTTACTTTAAAGGA------------GCAAACTTGAATTT-----------------AAAACTGCATGTATAG---TAAGCAAATTCGAAGATGTAA------TTTATATAAATTAAATTGTTTTTTATCTTCATCCTTTTAAGA-ACACCCC---ATAGAAAGTAAACCAATGGTTTCCAAATG-TTCAACAAAATGATGTTCTCTAATTATAATG
droYak3 4:381792-382072 - CGTGTTTAAAGAAAT---------ATGTAAAACCACATGCTTATTTCGAAACA----------GTTTT-----TCAAAAAATAAGTGTATGCGCGATAATTTTTC-TATTAAACTTTTTACTCTTAAGGG------------GCAAACTTGAATTTATTTTGCTTATTAATACAGAAATGCATGTATAG---AGAGCAATTTCGAAGATGTAACATTA-TTTATATAAATTAAATTGTTTG-TATCCTTATCCGTATAAGAAACACCCT---ATAGAAAGATAACCAATATTTTCCAGGGG-TTC------ATTATGTTCCCTTATTATATTG
droEug1 scf7180000408984:815355-815603 + CATGATGATTATTTTTAATAATAAGCACAAATTTG--AGCCCTTACCCAATAA--GA------TTTTT-----GTAATAAAGCAATGATGCCTCGATAAATTTCC-AATTAAGCCGTAAACTTTAAAAGAGACCGAAATCATACAAAAGTGAATTTACCAAACATAAATATTCATAAATGCATGTAAA----TGTT--TTGTTAGCTATTTAACATTTACTCTCAATCACT------------ATCCAAAAA--------------------------------------------------TGTTTGAAAAGTATGTTTTGTATTTATAAAA
droBia1 scf7180000301495:121867-122107 - TATAAA------------------GAGGAAACTCAAATGTTTATTTCAGTATG----------AAGTT-----TTTTAAGGAAAACACATG---GGTCATTGCTT-GATTAAAATGTTAAGTCTTTTAGGAACCGCAATTAGAAAAAAGTGAATTTATTTAGCGTATTTTTACAAAAGTGCATGTTTAT---TGTATAATCCCGCAGATGTAACATTTATTGTCATATATTAAATAGCTTGCTATCCTGAAT----------------------------------------------------CCCGAAAATTATGTTCTGTAACCATAATA
droTak1 scf7180000415786:55525-55801 - ATTAAG------------------AAGTAAATGAACATGCTTAT--------A----------GAATGTT---TTAAGGAAGC--ACATT----GATTATTTTTTATATTCAACTGTAAACTCTTAAGGGAACCCCAATTAGACAA-AGTGAATTTATTTAGCGTATA-ATACAAAAGTGCACGTACAT---TGCATAATACCAGAGTTGTAACATTTATTTGCATATATTAAATAGCTTGTTATCCTCAACCACATAAGT-ACACCCA---ATGCTCACATAACCAAAGGTTCCCTGAGT-ATCCCGAAAATTATGTTCT-TAACAATAATA
droEle1 scf7180000491238:1031035-1031334 + AGTAAT------------------AAGTAAATGATCGTGCTTATTTCAGTATATACATACCTGTAATATT---ATAAAGAAGC-ACATTGACATTGACATTTCTT-AATTGAACTGTAAACTCTTAAGGGAACCCCAATACCACAA-AGTGAATTTATTTATCTTATATATACAAACGTGCATGAA-AT---TGCATAATGCCGGAGATATAACATTTAATTTCTTATTTTAACTAGCTTGTTATCCCCAACCAAATAAGT-ACATGCA---ATGCTCACACAACCAAAGGTTCCCAGAGT-GCCCTGAAAATAATGTTTTGTTACAATAATA
droRho1 scf7180000780208:19860-20146 - GCAGGTTAATGTAAT---------ACGTAAATGATCGCTCTTATTTCAGTATA----------TAATG-----TTAAAAAAACACTGA---------C-ATTTTC-GATTCAACTGTAAACTCTTAAGGGAACCTCAATG--ACAAAAGTGAATTTATTTATCTTATTTATAAATATGTGCATGAA-AT---TACATAAAGCCAGAGATATAACACTTAATTTCATTTTTAAACTAGCCTGTTATACCCAACCAGATAAGT-ACACGCA---ATGCTCA-AAATCTAAAGGTTCCCTGAGTTACCCTGAAATTTATATTCTCTAACAATAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATGGCTATTAAAAT---------ATT----------TGCTTTTATCGAAACA----------GTATG-----TTAAAACAAAGGTGAATGCGCCATATTTTTTT-GATTAAACTTTTAACTCTAAAGAG------------GCAAACTTAAATTTATTAAGCTCATAAATTCAAATGTGCATGTATAGTAGTAAGCGATTTCGAAAATGTAACATTA-TTTATAT----AAATTAGTTTT-TTTCCAAAACCTTATAAGA-ACACCCT---ATAGAAAGTTAACCAATA--------------------------GTTCTCTAACTATAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................TAAGA-ACACCCT---ATAGAAAGTTAACCAA.............................................28110.001000000034210000000
...........................................................................................................................................................................TCAAATGTGCATGTATAGTAGTAAGCGA......................................................................................................................................2818.00800000062000000000
.........................................................................................................................................................................................................................................................................................TAACCAATA--------------------------GTTCTCTAACT......2016.00605100000000000000
..........................................................................................................................................................................................................................................................................................AACCAATA--------------------------GTTCTCTAACT......1916.00604200000000000000
......................................................................................................TTT-GATTAAACTTTTAACTCTAAAGA............................................................................................................................................................................................................2615.00500000014000000000
.....................................................................................................................................................................................................................................................................................AAGTTAACCAATA--------------------------GTTCTCTAACT......2415.00502020001000000000
.........................................TTTATCGAAACA----------GTATG-----TTAAAACAAAGG........................................................................................................................................................................................................................................................2915.00500000041000000000
......................................................................................................TTT-GATTAAACTTTTAACTCTAAAGAG------------GC.............................................................................................................................................................................................2914.00400000040000000000
......................................................................................................................................................................................TGTATAGTAGTAAGCGATTTCGAAAA.............................................................................................................................2614.00400000031000000000
.......................................................................................................................................................................................................TTTCGAAAATGTAACATTA-TTTATA............................................................................................................2514.00400000031000000000
................................................................................................................................................................................................TAAGCGATTTCGAAAATGTAACATTA-TT................................................................................................................2813.00300000021000000000
....................................................................................................................................................................................................................................................TCCAAAACCTTATAAGA-ACACCCT---ATAGA........................................................2913.00300000030000000000
................................................................................................................................................................................................TAAGCGATTTCGAAAATGTAACATTA-..................................................................................................................2613.00300000020010000000
................................................................................................................................................................................TGTGCATGTATAGTAGTAAGCGATTTCGAA...............................................................................................................................3013.00300000030000000000
.........................TT----------TGCTTTTATCGAAACA----------GTATG-----TTAA................................................................................................................................................................................................................................................................2713.00300000002001000000
..........................T----------TGCTTTTATCGAAACA----------GTATG-----TTAA................................................................................................................................................................................................................................................................2612.00200000010010000000
............................................................................................................................................................................................................................................................................T---ATAGAAAGTTAACCAATA--------------------------GTTCTCTAAC.......2912.00200010010000000000
......................................................................................................................................................................................................................................................CAAAACCTTATAAGA-ACACCCT---ATAGA........................................................2712.00200000002000000000
.........TAAAAT---------ATT----------TGCTTTTATCGAAACA----------GTA...........................................................................................................................................................................................................................................................................2812.00200000011000000000
............................................ATCGAAACA----------GTATG-----TTAAAACAAAGA........................................................................................................................................................................................................................................................2612.00200000020000000000
..............................................................................................................................................................................................................................................................TATAAGA-ACACCCT---ATAGAAAGTTAACCA..............................................2912.00200000020000000000
......................................................................................................................................................................................TGTATAGTAGTAAGCGATTTCGAA...............................................................................................................................2412.00200010010000000000
.........................................TTTATCGAAACA----------GTATG-----TTAAAACAAAGA........................................................................................................................................................................................................................................................2912.00200000011000000000
..............................................................................................................................................................................................................................................................TATAAGA-ACACCCT---ATAGAAAGTTA..................................................2512.00200000010000010000
..................................................................................................................................................................................................AGCGATTTCGAAAATGTAACATTA-TT................................................................................................................2612.00200000001000001000
.............................................................................................................................................................................................TAGTAAGCGATTTCGAAAATGTAACA......................................................................................................................2612.00200000011000000000
..............................................................................................................................................................................................................................................................TATAAGA-ACACCCT---ATAGAAAGTTAACCAA.............................................3012.00200000011000000000
...................................................................................................................................................................................GCATGTATAGTAGTAAGCGATTTCGAAAA.............................................................................................................................2912.00200000002000000000
........................................TTTTATCGAAACA----------GTATG-----TTAAAACA............................................................................................................................................................................................................................................................2612.00200000010100000000
..........................................................................................................................................................................................................................................................................................AACCAATA--------------------------GTTCTCTAAC.......1811.00100100000000000000
...............................................................................................................................................................................................................................................................ATAAGA-ACACCCT---ATAGAAAGTT...................................................2311.00101000000000000000
........................................................................................................................................................................................................................................................................................TTAACCAATA--------------------------GTTCTCTAACC......2111.00100100000000000000
CATGGCTATTAAAAT---------ATT----------TGCT....................................................................................................................................................................................................................................................................................................2211.00100100000000000000
........TTAAAAT---------ATT----------TGCTTTTATCGAAACA----------G.............................................................................................................................................................................................................................................................................2711.00100000000100000000
.....................................TGCTTTTATCGAAACA----------GTATG-----TTAA................................................................................................................................................................................................................................................................2511.00100000000001000000
............................................................................................................................................................................................................................................................................T---ATAGAAAGTTAACCAATA--------------------------GTTCTCT..........2611.00100000001000000000
.....................................................................................................TTTT-GATTAAACTTTTAACTCTAAAGA............................................................................................................................................................................................................2711.00100000010000000000
..............T---------ATT----------TGCTTTTATCGAAACA----------GT............................................................................................................................................................................................................................................................................2211.00100000000001000000
.........................................................................................................................TCTAAAGAG------------GCAAACTTAAATTTAA...............................................................................................................................................................................2511.00100000000000010000
.............................................................................................................................................................................................TAGTAAGCGATTTCGAAAATGTAACAT.....................................................................................................................2711.00100000010000000000
.....................................................................................................TTTT-GATTAAACTTTTAACTCTAAAA.............................................................................................................................................................................................................2611.00100000000000001000
...........................................................................................................................................................................................................................................................................................ACCAATA--------------------------GTTCTCTAACT......1811.00100100000000000000
...........................................................................................................................................................................................................................TTTATAT----AAATTAGTTTT-TTTCCAA....................................................................................2511.00100000010000000000
....................................................................................................TTTTT-GATTAAACTTTTAACTCTAAAGA............................................................................................................................................................................................................2811.00100000001000000000
..........................................................................................................................................................................TTCAAATGTGCATGTATAGTAGTA...........................................................................................................................................2411.00100000010000000000
.........................................................................................................................................................................................................................................................................CCCT---ATAGAAAGTTAACCAATA--------------------------GTTCT............2711.00100000010000000000
..........................................................................................................................................................................................TAGTAGTAAGCGATTTCGAAAATG...........................................................................................................................2411.00100000000001000000
............................................................................................................................................................................CAAATGTGCATGTATAGTAGTAAGCGA......................................................................................................................................2711.00100000001000000000
.....................................................................................................................TAACTCTAAAGAG------------GCAAACTTAAAT...................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................................................AACCTTATAAGA-ACACCCT---ATAGA........................................................2411.00100000010000000000
..........................................................................................................................................................................................TAGTAGTAAGCGATTTCGAAAATGTA.........................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................................................................AACCAATA--------------------------GTTCTCTAACC......1911.00101000000000000000
...........................................................................AAAACAAAGGTGAATGCGCCATA...........................................................................................................................................................................................................................................2311.00100000000001000000
..........................................................................................................................................................................TTCAAATGTGCATGTATAGTAGTAAGCGA......................................................................................................................................2911.00100000010000000000
..................................................................................................................................................................................................AGCGATTTCGAAAATGTAACA......................................................................................................................2111.00100000001000000000
.........................................................................TTAAAACAAAGGTGAATGCGCC..............................................................................................................................................................................................................................................2211.00100001000000000000
..........................T----------TGCTTTTATCGAAACA----------GTATG-----TTAAAA..............................................................................................................................................................................................................................................................2811.00100000010000000000
......................................................................................................................................................................................TGTATAGTAGTAAGCGATTTCGAAAATGTA.........................................................................................................................3011.00100000010000000000
............................................................................................................TTAAACTTTTAACTCTAAAGAG------------GCAAACT........................................................................................................................................................................................2911.00100000001000000000
........................................................................................................................................................................................TATAGTAGTAAGCGATT....................................................................................................................................1711.00100000000001000000
.............................................TCGAAACA----------GTATG-----TTAAAACAAAGA........................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................................................................................................................................................T-TTTCCAAAACCTTATAAGA-ACACCC.................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................................................GTTAACCAATA--------------------------GTTCTCTAACT......2211.00101000000000000000
..................................................................TG-----TTAAAACAAAGGTGAAT...................................................................................................................................................................................................................................................1911.00100000100000000000
................................................................................................................................................................................TGTGCATGTATAGTAGTAAGCGATTT...................................................................................................................................2611.00100000000000001000
...........................................TATCGAAACA----------GTATG-----TTAAAACAAAGA........................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................AAGGTGAATGCGCCATATT.........................................................................................................................................................................................................................................1911.00100010000000000000
........................................................................................................................................................................................................TTCGAAAATGTAACATTA-TTTATA............................................................................................................2411.00100000000001000000
.............................................................................................................TAAACTTTTAACTCTAAAGAG------------GCAAACTT.......................................................................................................................................................................................2911.00100000000000001000
...........................................TATCGAAACA----------GTATG-----TTAAAACAAAGG........................................................................................................................................................................................................................................................2711.00100000010000000000
............................................................................................................................................................................................GTAGTAAGCGATTTCGAAAA.............................................................................................................................2011.00100000000001000000
...................................................................................................TTTTTT-GATTAAACTTTTAACTCTAAAGA............................................................................................................................................................................................................2911.00100000010000000000
.................................................AACA----------GTATG-----TTAAAACAAAG.........................................................................................................................................................................................................................................................2011.00100000000000100000
................................................................................................................................................................................TGTGCATGTATAGTAGTAAG.........................................................................................................................................2011.00100000000001000000
.........................................................................................TGCGCCATATTTTTTT-GATTAAACT..........................................................................................................................................................................................................................2511.00100000010000000000
..................................................................TG-----TTAAAACAAAGGTGAATGCGCCA.............................................................................................................................................................................................................................................2511.00100010000000000000
......................................................................................................TTT-GATTAAACTTTTAACTCTAAA..............................................................................................................................................................................................................2411.00101000000000000000
..............................................................................................................................................................................AATGTGCATGTATAGTAGTAAGC........................................................................................................................................2311.00100000100000000000
...............................................................................................................AACTTTTAACTCTAAAGAG------------GCAAACT........................................................................................................................................................................................2611.00100000010000000000
..........AAAAT---------ATT----------TGCTTTTATCGAAA..........................................................................................................................................................................................................................................................................................2211.00100000001000000000
.........................................................................................TGCGCCATATTTTTTT-GATTAAACTT.........................................................................................................................................................................................................................2611.00100000000000001000
......................................................................................................TTT-GATTAAACTTTTAACTCTAAAGAG------------GCA............................................................................................................................................................................................3011.00100000010000000000
........TTAAAAT---------ATT----------TGCTTTTATCGAAACA----------GTA...........................................................................................................................................................................................................................................................................2911.00100000010000000000
...............................................................................................................................................................................ATGTGCATGTATAGTAGTAAGCGATT....................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................................CACCCT---ATAGAAAGTTAACCAATA--------------------------GTTCT............2911.00100000010000000000
.............................................................................................................TAAACTTTTAACTCTAAAGAG------------GCAAAC.........................................................................................................................................................................................2711.00100001000000000000
.............................................................................................................TAAACTTTTAACTCTAAAGAG------------GCAAACT........................................................................................................................................................................................2811.00100000010000000000
droSec2
CATGGCTATTAAAAT---------ATT----------TGCTTTTATCGAAACA----------GTATG-----TTAAAACAAAGGTGAATGCGCCATATTTTTTT-GATTAAACTTTTAACTCTAAAGAG------------GCAAACTTAAACTTATTAAGCTCATAAACTCAAATGTGCATGTATAGTAGTAAGCGATTTCGAAAATGTAACATTA-TTTATAT----AAATTAGTTTTTTTTCCAAAACCTTATAAGA-ACACCCT---ATAGAAAGTTAACCAATA--------------------------GTTCTCTAACTATAATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................GATTAAACTTTTAACTCTAAAGAG------------GC.............................................................................................................................................................................................2611.0010100
...............................................................................CAAAGGTGAATGCGCCATATTTTTTT-G..................................................................................................................................................................................................................................2711.0010010
......................................................................................................................................................................TAAACTCAAATGTGCATGTATAGTAG.............................................................................................................................................2611.0011000
......................................................................................................................................................................TAAACTCAAATGTGCATGTATAGTAGTA...........................................................................................................................................2811.0011000
....................................................................................................................................................................................CATGTATAGTAGTAAGCGATTTCGAAA..............................................................................................................................2711.0011000
.................................................................................................................................................................................GTGCATGTATAGTAGTAAGCGATTTCG.................................................................................................................................2711.0010010
.......................................................................................................................................................................AAACTCAAATGTGCATGTATAGTAG.............................................................................................................................................2511.0011000
..........................................................................................................................................................................................................................................................................................AACCAATA--------------------------GTTCTCTAACT......1911.0010010
.............AT---------ATT----------TGCTTTTATCGAAACA----------..............................................................................................................................................................................................................................................................................2111.0010010
...........................................................................AAAACAAAGGTGAATGCGCCAT............................................................................................................................................................................................................................................2211.0011000
.........................................................................................................................................................................................ATAGTAGTAAGCGATTTCGA................................................................................................................................2011.0010010
...................................................................................................................................................................................................................................................TTCCAAAACCTTATAAGA-AC.....................................................................2011.0011000
....................................................A----------GTATG-----TTAAAACAAAGGT.......................................................................................................................................................................................................................................................1911.0010010
............................................ATCGAAACA----------GTATG-----TTAAAACAAAG.........................................................................................................................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................................................................................TAACCAATA--------------------------GTTCTCTAACT......2011.0011000
......................................................................................................................AACTCTAAAGAG------------GCAAACT........................................................................................................................................................................................1911.0010010
.................................................................................................................................................................................................................................................................................TAGAAAGTTAACCAATA--------------------------GTTCTCTAAC.......2711.0011000
.........................................................................TTAAAACAAAGGTGAATGCGCCATA...........................................................................................................................................................................................................................................2511.0011000
..............................................................................................................................................................................................AGTAAGCGATTTCGAAAATGTAACA......................................................................................................................2511.0011000
.....................................................................................................................................................................................................................................................................................AAGTTAACCAATA--------------------------GTTCTCTAAC.......2311.0011000
............................................................................................................................................................................................GTAGTAAGCGATTTCGAAA..............................................................................................................................1911.0010100
................................................................................................................ACTTTTAACTCTAAAGAG------------GCAAA..........................................................................................................................................................................................2311.0011000
dm3
TGTGGCTATTAAAAT---------ATTTGTATCCACATGCTTATTTCGAAACA----------GTATG-----TTAAAACAAAGGTGAATGCGCGATATTTTTTT-GATTAAACTTTTAACTCTAAAGAG------------GCAAACTTAAATTTATTAATCTCATAAATACAAATGTGCATGTATAG---TAAGCGATTTCGAAAATGTAACATTA-TTTATAT---------------------------------GA-ACACCCAATTATAGAAAGTTAACGAATA--------------------------GTTCTCTAACTATAATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................TGTGCATGTATAG---TAAGCGATTTCGAA...............................................................................................................................27124.00240000000000000000000000100000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000200000200020000030000000000000000000000000000000000000000000010000000000000000000000300000000000000000100000000000400000
.....................................................................................................................TAACTCTAAAGAG------------GCAAACTTAAATT..................................................................................................................................................................................26120.00200000000000000000000000000000000000000000000000000000000000000000000000000000044000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000001000000000000000000000000000000000000000000000602010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TGTATAG---TAAGCGATTTCGAAAATG...........................................................................................................................25119.00190000000000000000000000000000000000000000000000001100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000200000000000000000001600000
.........................................................................TTAAAACAAAGGTGAATGCGCGATATT.........................................................................................................................................................................................................................................27119.00190000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002000000000000000000010000000000000000000000000000000000000180000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000110100000
.........................................................................TTAAAACAAAGGTGAATGCGCGATA...........................................................................................................................................................................................................................................25116.00160000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001020700000
....................................................................................................................TTAACTCTAAAGAG------------GCAAACTTAAATT..................................................................................................................................................................................27116.00160000000000000000000000000000000000000000000000000000000000000000000000000000012310000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TAAAACAAAGGTGAATGCGCGATATT.........................................................................................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001210300000
......................................................................................................................................................................................TGTATAG---TAAGCGATTTCGAAAATGTA.........................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000001000000000000001010300000
..........................................................................................................................................................................TACAAATGTGCATGTATAG---TAAGCGAT.....................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000500000
...............................................................................CAAAGGTGAATGCGCGATATT.........................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................TAACTCTAAAGAG------------GCAAACTTAAAT...................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000010120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TAACGAATA--------------------------GTTCTCTAACTATAAT.2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTAACGAATA--------------------------GTTCTCTAACT......2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000300000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTTAACTCTAAAGAG------------GCAAACTTAAATT..................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000010300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TATG-----TTAAAACAAAGGTGAATGCGCGA.............................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101400000
.............................................................................................................................................................................................................................TATAT---------------------------------GA-ACACCCAATTATAGAAAGT....................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000100000
............................................TTCGAAACA----------GTATG-----TTAAAACAAAGGT.......................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
................................................................................................................................................................................................TAAGCGATTTCGAAAATGTAACATTA-..................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100000
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.........................................................................................................................................................................ATACAAATGTGCATGTATAG---T............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTAAATTTATTAATCTCATAAATACAAA.............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................ACA----------GTATG-----TTAAAACAAAGGTGAATGCG................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTTATTTCGAAACA----------GTATG-----TTAAAA..............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................TAAAACAAAGGTGAATGCG................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................ACAAAGGTGAATGCGCGATATTTTTTT-...................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TAACTCTAAAGAG------------GCAAACTTAA.....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACTCTAAAGAG------------GCAAACTTA......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TAG---TAAGCGATTTCGAAAATG...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................CATGCTTATTTCGAAACA----------G.............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................GTATAG---TAAGCGATTTCGAG...............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................TTTT-GATTAAACTTTTAACTCTAAAGAG------------G..............................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTCGAAAATGTAACATTA-TT................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TTTCGAAAATGTAACATTA-TTTATAT---------------------------------GA-.......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AATGTGCATGTATAG---TAAGCGATTT...................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................AACTTTTAACTCTAAAGAG------------G..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AGGTGAATGCGCGATATTT........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................................................................G-----TTAAAACAAAGGTGAATGCG................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................TTTTAACTCTAAAGAG------------GCAAACTTAAAA...................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TAAAGAG------------GCAAACTTAAATTTATTAAG...........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ATGTGCATGTATAG---TAAGCGAA.....................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................TTAAAACAAAGGTGAATGCGCGA.............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................ATTTCGAAACA----------GTATG-----TTAAA...............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GTATG-----TTAAAACAAAGGTGAA....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTTTT-GATTAAACTTTTAACTCTAAAGA............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTATTTCGAAACA----------GTATG-----TT..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TAACTCTAAAGAG------------GCAAACTTAAA....................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TGCGCGATATTTTTTT-GATTAAACT..........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTGTATCCACATGCTTATTTCGAAACA----------GT............................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATGTATAG---TAAGCGATTTCG.................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAAACA----------GTATG-----TTAAAACAAAGGTG......................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................AAAGGTGAATGCGCGATATTTTTTT-G..................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGCGATTTCGAAAATGTAAC.......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................T---------------------------------GA-ACACCCAATTATAGAAAGTTAACGA..............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTTTTT-GATTAAACTTTTAACT...................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TAT---------------------------------GA-ACACCCAATTATAGAAAGTTAAC................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACAAAGGTGAATGCGCGATATTTTT......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................T-GATTAAACTTTTAACTCTAAAGAG------------GCA............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................ATAAATACAAATGTGCATGT....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........TTAAAAT---------ATTTGTATCCACATGCT....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................TTTTT-GATTAAACTTTTAACTCTAAA..............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TTA-TTTATAT---------------------------------GA-ACACCCAATTATA..........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................AAACTTTTAACTCTAAAGAG------------GC.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TATAGAAAGTTAACGAATA--------------------------G................2011.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GGTGAATGCGCGATATTTTTT.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGCTTATTTCGAAACA----------GTATG-----....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEre2
AATGTTT-------------------------------GTTTTTA--GAAAAT----------ATATG--AAATCAAAAAAAAAGTGTATGCGCGATCATTTTTC-AATTAAACTTTTTACTTTAAAGGA------------GCAAACTTGAATTT-----------------AAAACTGCATGTATAG---TAAGCAAATTCGAAGATGTAA------TTTATATAAATTAAATTGTTTTTTATCTTCATCCTTTTAAGA-ACACCCC---ATAGAAAGTAAACCAATGGTTTCCAAATG-TTCAACAAAATGATGTTCTCTAATTATAATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................ATTT-----------------AAAACTGCATGTATAG---T............................................................................................................................................2112.0020000200
.........................................................................................................................................................................................ATAG---TAAGCAAATTCGAAGATGT..........................................................................................................................2312.0020000200
.................................................................................................................................................................................................AAGCAAATTCGAAGATGTAA------TTT...............................................................................................................2312.0020000200
.........................................................................................................................................................................................ATAG---TAAGCAAATTCGAAGATGTAA------T.................................................................................................................2612.0020001100
.........................................................................................TGCGCGATCATTTTTC-AATTAAACTTT........................................................................................................................................................................................................................2712.0020000002
........................................................................ATCAAAAAAAAAGTGTATGCGCGAT............................................................................................................................................................................................................................................2511.0010000100
..........................................................................................................................................................................................................................................TTGTTTTTTATCTTCATCCTT..............................................................................2111.0010100000
...................................................................G--AAATCAAAAAAAAAGTGTATGCGC...............................................................................................................................................................................................................................................2511.0010000010
.................................................................ATG--AAATCAAAAAAAAAGTGT.....................................................................................................................................................................................................................................................2111.0010000010
.................................................................................................................................................................................................AAGCAAATTCGAAGATGTAA------T.................................................................................................................2111.0010000100
...............................................................................................................................GGA------------GCAAACTTGAATTT-----------------AAA.............................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................TTTAAGA-ACACCCC---ATAGAAAGT....................................................2311.0011000000
.....................................................................................................................TTACTTTAAAGGA------------GCAAACTT.......................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................ATAG---TAAGCAAATTCGAAGATGTAA------TT................................................................................................................2711.0010000100
..................................................................................................................................................................................................AGCAAATTCGAAGATGTAA------T.................................................................................................................2011.0010000100
............................................................................................................................AAAGGA------------GCAAACTTGAATTT-----------------AAAACT..........................................................................................................................................................2611.0010000100
......................................................................................GTATGCGCGATCATTTTTC-AATTA..............................................................................................................................................................................................................................2411.0010000010
........................................................................................................................................................................................................................................................CATCCTTTTAAGA-ACACCCC---ATAGAAAGT....................................................2911.0010100000
.........................................................................................................................................................................................................................................................................................................................GATGTTCTCTAATTATAAT.1911.0010100000
....................................................................................................................................................................................................................................................................................................................AAAATGATGTTCTCTAAT.......1811.0010100000
..............................................................................AAAAAAGTGTATGCGCGATC...........................................................................................................................................................................................................................................2011.0010100000
............................................................................................................................................................................................G---TAAGCAAATTCGAAGATGTAA------TTTA..............................................................................................................2611.0010001000
................................................................TATG--AAATCAAAAAAAAAGTGT.....................................................................................................................................................................................................................................................2211.0010000100
...............................................................................................................................................................................................................................................................TTAAGA-ACACCCC---ATAGAAA......................................................2011.0010001000
........................................................................................................................................................................................................................................................CATCCTTTTAAGA-ACACCCC---ATAGAAA......................................................2711.0010100000
..............................................................................................................AAACTTTTTACTTTAAAGGA------------GCAAACTTG......................................................................................................................................................................................2911.0010000100
.......................................................................................TATGCGCGATCATTTTTC-A..................................................................................................................................................................................................................................1911.0011000000
.........................................................................................................................................................TTT-----------------AAAACTGCATGTATAG---T............................................................................................................................................2011.0010100000
........................................TTTTA--GAAAAT----------ATATG--AAATC..................................................................................................................................................................................................................................................................2111.0010100000
......................................................................................................................TACTTTAAAGGA------------GCAAACTTGAATT..................................................................................................................................................................................2511.0010000100
.......................................................................................................................................................................................GTATAG---TAAGCAAATTCGAAGAT............................................................................................................................2311.0010100000
.................................................................................................................................................................................................................................................................................TAGAAAGTAAACCAATGGT.........................................1911.0010001000
.................................................................................................................................................................................................AAGCAAATTCGAAGATGTAA------TTTATAT...........................................................................................................2711.0010000100
.............................................................................................................................................................................................................................................................TTTTAAGA-ACACCCC---ATAGAAAGT....................................................2411.0010001000
............................................................................................................................................................................................G---TAAGCAAATTCGAAGATGTAA------T.................................................................................................................2311.0010100000
.............................................................................................................................................................................................................................................................................................CAATGGTTTCCAAATG-TTCAAC.........................2211.0010100000
......................................................................................................................................................................................................................................................................ACACCCC---ATAGAAAGTAAAC................................................2011.0010100000
.......................................................................................................................................................................................GTATAG---TAAGCAAATTCGAA...............................................................................................................................2011.0010000010
..................................................................................................................................................ACTTGAATTT-----------------AAAACTGCATGTATAG---C............................................................................................................................................2711.0010100000
.............................................................................................................................................................................................................................................TTTTTTATCTTCATCCTTTTAA..........................................................................2211.0010100000
......................................................................................................................................................GAATTT-----------------AAAACTGCATGT....................................................................................................................................................1811.0010100000
...................................................................................................................................................................................................................AA------TTTATATAAATTAAATT.................................................................................................1911.0011000000
................................................................................................................................................................................................TAAGCAAATTCGAAGATGTAA------T.................................................................................................................2211.0010000100
...................................................................................AGTGTATGCGCGATCATT........................................................................................................................................................................................................................................1811.0010100000
...............................................................ATATG--AAATCAAAAAAAAAGTGTATGC.................................................................................................................................................................................................................................................2711.0010000010
.....................................................................................................................................................................................ATGTATAG---TAAGCAAATTCGAAGATGT..........................................................................................................................2711.0010000010
..........................................TTA--GAAAAT----------ATATG--AAAT...................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................GAATTT-----------------AAAACTGCATGTATAG---T............................................................................................................................................2311.0010100000
...............................................................................................................................................................................................................................................................TTAAGA-ACACCCC---ATAGAAAGTAAA.................................................2511.0010000100
droYak3
CGTGTTTAAAGAAAT---------ATGTAAAACCACATGCTTATTTCGAAACA----------GTTTT-----TCAAAAAATAAGTGTATGCGCGATAATTTTTC-TATTAAACTTTTTACTCTTAAGGG------------GCAAACTTGAATTTATTTTGCTTATTAATACAGAAATGCATGTATAG---AGAGCAATTTCGAAGATGTAACATTA-TTTATATAAATTAAATTGTTTG-TATCCTTATCCGTATAAGAAACACCCT---ATAGAAAGATAACCAATATTTTCCAGGGG-TTC------ATTATGTTCCCTTATTATATTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................ATAG---AGAGCAATTTCGAAGAT............................................................................................................................2113.00300200010000
.........................................................................................................................................................................................ATAG---AGAGCAATTTCGAAGATGTAAC.......................................................................................................................2612.00200000020000
.........................................................................................................................................................................................ATAG---AGAGCAATTTCGAAGATGTAACAT.....................................................................................................................2812.00202000000000
......................................................................................................................................................................................................................................................................................AGATAACCAATATTTTCCAGGGG-TTC------A.....................2711.00101000000000
........................................................................................................................................................................................................TTCGAAGATGTAACATTA-TTTATATAA.........................................................................................................2711.00100000010000
.................................................................................................................................................................................................GAGCAATTTCGAAGATGTAA........................................................................................................................2011.00100000010000
............................................................................................................................................................................CAGAAATGCATGTATAG---AGA..........................................................................................................................................2011.00100000010000
.................................................AACA----------GTTTT-----TCAAAAAATAAGT.......................................................................................................................................................................................................................................................2211.00101000000000
...........................................................................................................................................................................ACAGAAATGCATGTATAG---AGAGC........................................................................................................................................2311.00100000010000
..................................................................................................................................................ACTTGAATTTATTTTGCTTATTA....................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................AG---AGAGCAATTTCGAAGAT............................................................................................................................1911.00100000010000
..........................................................................................................................CTTAAGGG------------GCAAACTTGAATTTATTTT............................................................................................................................................................................2711.00100000010000
.........................................................................................................................................................................ATACAGAAATGCATGTATAG---AGAGC........................................................................................................................................2511.00100000010000
.....................................................................................................................................................................................................................................TTAAATTGTTTG-TATCCTTATCCGT..............................................................................2511.00100000010000
....TTTAAAGAAAT---------ATGTAAAACCACATGCT....................................................................................................................................................................................................................................................................................................2811.00101000000000
...............................................................................AATAAGTGTATGCGCGATA...........................................................................................................................................................................................................................................1911.00100100000000
.................................................................................................................................................................................................................................................................AAGAAACACCCT---ATAGAAAGA....................................................2111.00100000010000
.........AGAAAT---------ATGTAAAACCACATGCTTATT................................................................................................................................................................................................................................................................................................2711.00101000000000
............................................................................................................................................................................CAGAAATGCATGTATAG---AGAGCA.......................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................GAGCAATTTCGAAGATGTAACAT.....................................................................................................................2311.00101000000000
..........................GTAAAACCACATGCTTATTTCGAAACA----------G.............................................................................................................................................................................................................................................................................2811.00101000000000
..............................................................................................................................................................................GAAATGCATGTATAG---AGA..........................................................................................................................................1811.00100000010000
..................................................................................................................................................ACTTGAATTTATTTTGCTTATT.....................................................................................................................................................................2211.00101000000000
...................................................................................................................................................................................GCATGTATAG---AGAGCAATTTCGAA...............................................................................................................................2411.00100000010000
...............................................................................................................................................................................AAATGCATGTATAG---AGAG.........................................................................................................................................1811.00101000000000
....................................................................................................................................................................TATTAATACAGAAATGCATGT....................................................................................................................................................2111.00101000000000
..................................................................................................................................................................................TGCATGTATAG---AGAGCAATTT...................................................................................................................................2111.00100000010000
................................................................................ATAAGTGTATGCGCGATAATTTTTC-TATT...............................................................................................................................................................................................................................2911.00100000010000
...........................................................................................CGCGATAATTTTTC-TATTAAACTTTTT......................................................................................................................................................................................................................2711.00100000100000
............................................................................................................TTAAACTTTTTACTCTTAAGGG------------GCA............................................................................................................................................................................................2511.00101000000000
..............................................................................................................AAACTTTTTACTCTTAAGGG------------GCAAA..........................................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................AATTTCGAAGATGTAACAT.....................................................................................................................1911.00101000000000
.................................................................................................................................................................................................GAGCAATTTCGAAGATGTAACATTA-T.................................................................................................................2611.00101000000000
......................................................................................GTATGCGCGATAATTTTTC-TAC................................................................................................................................................................................................................................2211.00100100000000
............................................................................................................................................................................................................................................................................................................G-TTC------ATTATGTTCCCTTATTAT....2211.00101000000000
................................................................................................................................................................................................................................................................................ATAGAAAGATAACCAATATT.........................................2011.00100010000000
.....................................................................................................................................................................ATTAATACAGAAATGCATGT....................................................................................................................................................2011.00100000010000
......................................................................................................................................................................................................................................TAAATTGTTTG-TATCCTTATCCGT..............................................................................2411.00100000010000
...............................................GAAACA----------GTTTT-----TCAAAAAATAAGT.......................................................................................................................................................................................................................................................2411.00101000000000
...........................................................................................................................................................................ACAGAAATGCATGTATAG---AGAGCAAT.....................................................................................................................................2611.00100000010000
.........................................................................................................................................................................................ATAG---AGAGCAATTTCGAAGATGT..........................................................................................................................2311.00100100000000
...............................................................................................................................................................................AAATGCATGTATAG---AGAGC........................................................................................................................................1911.00100000010000
............................................................................................................................................................................CAGAAATGCATGTATAG---AGAGC........................................................................................................................................2211.00101000000000
..........................GTAAAACCACATGCTTATTT...............................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................GAGCAATTTCGAAGATGTAACATTA-TT................................................................................................................2711.00101000000000
droEug1
CATGATGATTATTTTTAATAATAAGCACAAATTTG--AGCCCTTACCCAATAA--GA------TTTTT-----GTAATAAAGCAATGATGCCTCGATAAATTTCC-AATTAAGCCGTAAACTTTAAAAGAGACCGAAATCATACAAAAGTGAATTTACCAAACATAAATATTCATAAATGCATGTAAA----TGTT--TTGTTAGCTATTTAACATTTACTCTCAATCACT------------ATCCAAAAA--------------------------------------------------TGTTTGAAAAGTATGTTTTGTATTTATAAAASizeHit CountTotal NormTotal
No Reads
droBia1
TATAAA------------------GAGGAAACTCAAATGTTTATTTCAGTATG----------AAGTT-----TTTTAAGGAAAACACATG---GGTCATTGCTT-GATTAAAATGTTAAGTCTTTTAGGAACCGCAATTAGAAAAAAGTGAATTTATTTAGCGTATTTTTACAAAAGTGCATGTTTAT---TGTATAATCCCGCAGATGTAACATTTATTGTCATATATTAAATAGCTTGCTATCCTGAAT----------------------------------------------------CCCGAAAATTATGTTCTGTAACCATAATASizeHit CountTotal NormTotal
No Reads
droTak1
ATTAAG------------------AAGTAAATGAACATGCTTAT--------A----------GAATGTT---TTAAGGAAGC--ACATT----GATTATTTTTTATATTCAACTGTAAACTCTTAAGGGAACCCCAATTAGACAA-AGTGAATTTATTTAGCGTATA-ATACAAAAGTGCACGTACAT---TGCATAATACCAGAGTTGTAACATTTATTTGCATATATTAAATAGCTTGTTATCCTCAACCACATAAGT-ACACCCA---ATGCTCACATAACCAAAGGTTCCCTGAGT-ATCCCGAAAATTATGTTCT-TAACAATAATASizeHit CountTotal NormTotal
No Reads
droEle1
AGTAAT------------------AAGTAAATGATCGTGCTTATTTCAGTATATACATACCTGTAATATT---ATAAAGAAGC-ACATTGACATTGACATTTCTT-AATTGAACTGTAAACTCTTAAGGGAACCCCAATACCACAA-AGTGAATTTATTTATCTTATATATACAAACGTGCATGAA-AT---TGCATAATGCCGGAGATATAACATTTAATTTCTTATTTTAACTAGCTTGTTATCCCCAACCAAATAAGT-ACATGCA---ATGCTCACACAACCAAAGGTTCCCAGAGT-GCCCTGAAAATAATGTTTTGTTACAATAATASizeHit CountTotal NormTotal
No Reads
droRho1
GCAGGTTAATGTAAT---------ACGTAAATGATCGCTCTTATTTCAGTATA----------TAATG-----TTAAAAAAACACTGA---------C-ATTTTC-GATTCAACTGTAAACTCTTAAGGGAACCTCAATG--ACAAAAGTGAATTTATTTATCTTATTTATAAATATGTGCATGAA-AT---TACATAAAGCCAGAGATATAACACTTAATTTCATTTTTAAACTAGCCTGTTATACCCAACCAGATAAGT-ACACGCA---ATGCTCA-AAATCTAAAGGTTCCCTGAGTTACCCTGAAATTTATATTCTCTAACAATAATASizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 04:15 PM