ID:

dsi_27475

 Coordinate:

3l:11512437-11512586 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.7 -21.7 -21.4

Flybase annnotation

CDS [3l_11512587_11512686_-]; exon [3l_11512587_11512686_-]; intron [3l_11511843_11512586_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCATCCTGACCAGTTCAAGGTCTGGTACACAGTTGACAAGGCAAACGAAGGTGAGTTGCAGTAATAAAGGAGCCAAATGGATCATCATCATTTACGTGTTCATAAGATCGTATCATTTGATCGTCAAAAATTCGCTGGAATATAATAGGACATAAAATTATGTAAATTCTTTTATTGTTAGAACTTTAAAACCTTTTAAAGGATTTAGTATCATGGTTTCATTTTTCATTCCGAACATATTCATGCACTC
**************************************************..(((((..(((((((((((((.......(((.((((.....((((...((....)).)))).....)))).)))....((((....))))........(((((....)))))...)))))))))))))..)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
...............................GTTGACAAGGCAAACGAAGGTTGGC.................................................................................................................................................................................................. 25 3 1 3.00 3 0 2 1 0 0 0 0 0 0
....................TCTGGTACACAGTGGACAAGGCAA.............................................................................................................................................................................................................. 24 1 1 3.00 3 3 0 0 0 0 0 0 0 0
............GTTCAAGGTCTGGTACAC............................................................................................................................................................................................................................ 18 0 1 2.00 2 0 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGGTTTCATTTTTCATTCCGAA............... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.....................CTGGTACACAGTGGACAAGGCAT.............................................................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............TCAAGGTCTGGTACACAGTGGACA.................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..ATCCTGACCAGTTCAAGGTCTG.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................GACAAGGCAAACGAAGGTTG.................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................................................................................................AATTCGCTGGAATATAATAGGAC................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............GTTCAAGGTCTGGTACACAGTT........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................ACAAGGCAAACGAAGGTTGGC.................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
.......................................................................GCCAAATGCCTCATCATCTTT.............................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0
..............................................................................................................TATAATCCGATCGTCAAAAA........................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
..................................................................................CATCAGCATTTAAGTGTT...................................................................................................................................................... 18 2 12 0.08 1 0 0 0 1 0 0 0 0 0
................................................CGGAGAGTGGCAGTAATAAA...................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTATGGTTAGAACTAAAAAA........................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................TTTCCATTCCGAACA............. 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGTAGGACTGGTCAAGTTCCAGACCATGTGTCAACTGTTCCGTTTGCTTCCACTCAACGTCATTATTTCCTCGGTTTACCTAGTAGTAGTAAATGCACAAGTATTCTAGCATAGTAAACTAGCAGTTTTTAAGCGACCTTATATTATCCTGTATTTTAATACATTTAAGAAAATAACAATCTTGAAATTTTGGAAAATTTCCTAAATCATAGTACCAAAGTAAAAAGTAAGGCTTGTATAAGTACGTGAG
**************************************************..(((((..(((((((((((((.......(((.((((.....((((...((....)).)))).....)))).)))....((((....))))........(((((....)))))...)))))))))))))..)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
.......................................................................................................................................................................AGCAAATACCAATCTTGA................................................................. 18 2 8 653.63 5229 4380 840 6 0 0 0 0 2 1
.......................................................................................................................................................................AGCAAATACCAATCTTG.................................................................. 17 2 16 1.69 27 0 0 20 4 0 1 0 2 0
.......................................................................................................................................................................AGAAAATAACGTTCTTGAGATT............................................................. 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................AAAGTAAGGCTTGTAT........... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................TGCATCCGCTCAACGTC............................................................................................................................................................................................. 17 2 9 0.67 6 0 0 0 0 0 6 0 0 0
.......................................................................CGGTTAACCTAGTAGTAAGAA.............................................................................................................................................................. 21 3 3 0.67 2 0 0 0 0 0 0 2 0 0
.......................................................................................................................................................................ACAAAATACCAATCTTGA................................................................. 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0
........................................................................GGCTTACCTAGTAGT................................................................................................................................................................... 15 1 16 0.06 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................AGCAAATACCAATCTT................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAATTTAGGCTTGTAT........... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................AAAATACCAATCTTG.................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................................................................TAAACTAGAAGCTTTTAAG..................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:23 AM