ID:

dsi_27463

Coordinate:

3r:4510816-4510965 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-5.78	-5.78	-5.28

Flybase annnotation

CDS [3r_4510966_4511060_-]; exon [3r_4510966_4511060_-]; intron [3r_4505016_4510965_-]

Repeatable elements

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATGAAGCGTCCGCCACGTGACCCCTTCAACGATAAATTAGTGAACTCAAGGTGCCAATCAAGTCAATTTATACCCCACACTAATACACACCCACACACACACACCACACACACACTCGCCAACTCACTAACCTCAACCTTTAAAAGGATAAATCAAGACTGAAGTAAAGAAAAGCGCAAATCAAGAGAAAAAACATATAACTATAGCATATGTCTTATGTGTATGTGGCTGGATTGTACTAGAATAAGTT ************************************************((((...(((.(((.((((((.((.......................................................................))))))))...))))))...........)))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	M053 female body	GSM343915 embryo	M024 male body
................................TAAATTAGTGAACTCAAGGTGCC...................................................................................................................................................................................................	23	0	1	2.00	2	2	0	0	0	0	0	0
.........................TCAACGATAAATTAGTGAACTCAAGGTGC....................................................................................................................................................................................................	29	0	1	1.00	1	0	0	1	0	0	0	0
.....................CCCTTCAACGATAAATTAGTGAACTCAAG........................................................................................................................................................................................................	29	0	1	1.00	1	0	0	0	0	1	0	0
..................GACCCCTTCAACGATAAATTAGT.................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	1	0
..........................................................CAAGTCAATTTATACCCCACACT.........................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................TCCAGAGAAAGAATATATAACTA...............................................	23	3	1	1.00	1	0	0	0	1	0	0	0
....................................TTAGTGAACTCAAGGTGCCAATCAA.............................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................TATGTGGCTGGATTGTACTAGAATAAGTT	29	0	1	1.00	1	0	1	0	0	0	0	0
................................TAAATTAGTGAACTGAAATTGC....................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0	0
.................................................................................................................................TCCTCAACCTTTAAAA.........................................................................................................	16	1	3	0.33	1	0	1	0	0	0	0	0
......................................................................................................................................................................................GAGAGAAAAGACATATCACT................................................	20	3	11	0.09	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................GCATATGTCTGATCTTTATG.........................	20	3	14	0.07	1	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................GGCAGGATTGTACTAT........	16	2	20	0.05	1	0	0	1	0	0	0	0
..........................................................................................................................................................AAGACTGAATTATAGAA...............................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0

Anti-sense strand reads

TACTTCGCAGGCGGTGCACTGGGGAAGTTGCTATTTAATCACTTGAGTTCCACGGTTAGTTCAGTTAAATATGGGGTGTGATTATGTGTGGGTGTGTGTGTGTGGTGTGTGTGTGAGCGGTTGAGTGATTGGAGTTGGAAATTTTCCTATTTAGTTCTGACTTCATTTCTTTTCGCGTTTAGTTCTCTTTTTTGTATATTGATATCGTATACAGAATACACATACACCGACCTAACATGATCTTATTCAA ************************************************((((...(((.(((.((((((.((.......................................................................))))))))...))))))...........)))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M024 male body
................................................TCCACGGCTAGCTCAGTT........................................................................................................................................................................................	18	2	4	0.50	2	1	1	0	0	0	0	0
...............................................TTCCACGGCTAGCTCAGTT........................................................................................................................................................................................	19	2	2	0.50	1	1	0	0	0	0	0	0
................................................TCCACGGCTAGCTCAGT.........................................................................................................................................................................................	17	2	9	0.44	4	3	0	0	0	1	0	0
..........................................................................................GGTGTGGGTGTGTGGTGTGGGTGT........................................................................................................................................	24	2	5	0.20	1	0	0	1	0	0	0	0
.................................................CCACGGCTAGCTCAGTT........................................................................................................................................................................................	17	2	16	0.19	3	3	0	0	0	0	0	0
......................................................................................................................................................TCAGTTTTGACTTCATTTC.................................................................................	19	2	12	0.17	2	0	0	0	0	0	1	1
...............................................TTCCACGGCTAGCTCAG..........................................................................................................................................................................................	17	2	15	0.13	2	0	0	0	2	0	0	0
..............................................ATTCCACGGCTAGCTCAGT.........................................................................................................................................................................................	19	3	10	0.10	1	1	0	0	0	0	0	0
........................................................................................TGGGTGTGGGTGTGTAGTGTGGGTG.........................................................................................................................................	25	3	11	0.09	1	0	0	1	0	0	0	0
................................................................................................TGTGTGTGGTGTGTGT..........................................................................................................................................	16	0	20	0.05	1	0	0	0	1	0	0	0
........GGGCGGTGCACTGGGC..................................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................ATGGTATACAGAATGC...............................	16	2	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/24/2015 at 09:03 AM