ID:

dsi_27462

 Coordinate:

2l:5350687-5350850 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.2 -12.4

Flybase annnotation

three_prime_UTR [2l_5350608_5351686_+]; exon [2l_5349906_5351686_+]

No Repeatable elements found

Sense Strand Reads

########################################################################################################################################################################################################################################################################
AACAAGCACACACGAAGATCATAATTTAGATCCCAAAAACACACGCCGAGGTACAGAGATTTATTATTCAGCTAAGTTATTTTTTGTGGCCGCAGCGCCAGTTATTTAATCAAAAACAAAAACATTTGTGTAGAGATCTGCTGCTCAAGCAGCTAAAACTGAATCTTCTTTCGTTTGTACACTTTCGTTTTCCCTTTCTTAACAAATTCTATAGTTCATTGTTTCGATTTTTTCTGTTTCCACGTTAACCGATCCCATTGTAAA
******************************************************************************************************************************.(((((.((((..(((((....)))))...................)))).)))))..............******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
..............................................................................................................................TGTGTAGAGATCTGCTGCTCAAGCAGC............................................................................................................... 27 0 1 24.00 24 6 10 4 0 2 0 1 1 0 0
..............................................................................................................................TGTGTAGAGATCTGCTGCTCAAGCAG................................................................................................................ 26 0 1 8.00 8 0 0 7 0 0 0 1 0 0 0
..............................................................................................................................TGTGTAGAGATCTGCTGCTCAAGCAA................................................................................................................ 26 1 1 5.00 5 0 0 5 0 0 0 0 0 0 0
.............................................................................................................................TTGTGTAGAGATCTGCTGCTCAAGC.................................................................................................................. 25 0 1 4.00 4 1 0 0 3 0 0 0 0 0 0
............................................................................................................................TTTGTGTAGAGATCTGCTGCTCAAGCAGC............................................................................................................... 29 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTCGTTTGTACACTTTCGTTTTCCCTT.................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................................................TACAGAGATTTATTATTCAGCTAAGT........................................................................................................................................................................................... 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
.............................................................................................................................TTGTGTAGAGATCTGCTGCTCAAGCAGC............................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.......................................CACACGTCGAGGTACAGAGATTTATT....................................................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................AGAGATTTATTATTCAGCT............................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................CATTTGTGTAGAGATCTGCTGCT....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAAACATTGGTGTAGAGATCTGCTGCT....................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTCGATTTTTTCTGTTTCCACGTT.................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TTTGTGTAGAGATCTGCTGCTCAAGCAG................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAGTTCATTGTTTCGATTTT................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CTTAACAAATTCTATAGTTCATT............................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................CTTCTTTCGTTTGTTCACTTTCGTT........................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................TTGCGTAGAGATCTGCTGCTCAAGC.................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................AGCTAAAACTGAATCTTCTTTCGTTAA....................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................GTAGAGATCTGCTGCTCAAGC.................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................GTAGAGATCTGCTGCTCAAGCA................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................AACAAAAACATTTGTGTAGAGA................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TTCTGTTTCCACGTTAACCGATCCCATT..... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................TGTAGAGATCTGCTGCTCAAGCAG................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TCCCTTTCTTAACAAATTCTATAGT................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTCGATTTTTTCTGTTTCCACGTTAACCGA............ 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................CACACGTCGAGGTACAGAGATTTAT........................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................CAAAAACACACGCCGAGGTACAGAGA............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTTTCTGTTTCCACGTTAAC............... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TTCATTGTTTCGATTTTTTCTGTT.......................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................TAATTTAGAACCCAAAAACACACGCCGA....................................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................GACACGTCGAGGTACAGAGATTTATTA...................................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAAACATTTGTGTAGAGATC.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...............................CCCAAAAACACACGTCGAGGTACAGAGA............................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTGTACACTTTCGTTTTCCCTTTC.................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................ATCAAAAACAAAAACATTTGTGTAGAGA................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TACAGAGATTTATTATTCAGCTAAGTT.......................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TCTTCTTTCGTTTGTACACTTTCGTT........................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AACATTTGTGTAGAGATCTGCTGCTCAA.................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TTTCCCTTTCTTAACAAATTCTATAGT................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTCGTTTTCCCTTTCTTAACA............................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................ATTTGTGTAGAGATCTGC........................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGTTCATTGTTTCGATTTTTTCTGT........................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................TAAGTTATTTTTTGTGGCCGC........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................ATTTTAGATCCCAAAAA................................................................................................................................................................................................................................. 17 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...............................................GAGGTACGGAGATTTAA........................................................................................................................................................................................................ 17 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................TGTGTAGAGATCTGG........................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................GTCCGCAGCGCCAGT.................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0
...................................................................................TTGTGGCCGCAGCGA...................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCATTGTTTCGTTTT.................................. 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTGTTCGTGTGTGCTTCTAGTATTAAATCTAGGGTTTTTGTGTGCGGCTCCATGTCTCTAAATAATAAGTCGATTCAATAAAAAACACCGGCGTCGCGGTCAATAAATTAGTTTTTGTTTTTGTAAACACATCTCTAGACGACGAGTTCGTCGATTTTGACTTAGAAGAAAGCAAACATGTGAAAGCAAAAGGGAAAGAATTGTTTAAGATATCAAGTAACAAAGCTAAAAAAGACAAAGGTGCAATTGGCTAGGGTAACATTT
********************************************************************.(((((.((((..(((((....)))))...................)))).)))))..............****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
............................................................................................GTCGCGGTCAATAAATTAGTT....................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................GGCGTCGCGGTCAAGA............................................................................................................................................................... 16 1 5 1.60 8 0 0 0 2 6 0 0 0 0 0 0
..........................................................................................................................GTAAACACATCTCTAGACGAC......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GCAATTGGCTAGGGTAACATT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTGTTTAAGATATCAAGT.............................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................TTGTGTGCGGCTCCATGTCTC.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................GTGCGGCTCCATGTCTCTAAAT......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................ACCGGCGTCGCGGTCAAGA............................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GACGACGAGTTCGTCGATTTT.......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GTGCAATTGGCTAGGGTAACA... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGTGTCGCGGTCAATA............................................................................................................................................................... 16 1 4 0.75 3 0 1 0 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................AGACAAAGGGGCAAT................. 15 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................CCGGAGTCGCAGTCAATA............................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................GCGTCGCGGTCAAGA............................................................................................................................................................... 15 1 13 0.23 3 0 2 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................AACAAATCTAATAAAGACAA.......................... 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGCGTAGCGGTCAAGA............................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0
.......................................................................................CCGGAGTCGCGGTCAATG............................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................TAAGATATCAAGTAATTAA........................................ 19 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
.................TTGTGTTAATTCTAGGGTTTT.................................................................................................................................................................................................................................. 21 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................CCGGTGTCGCGGTCAAG................................................................................................................................................................ 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGATATCAAGTAATTAA........................................ 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................CCGGAGTCGCAGTCAATC............................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................TGTTTGGGAACACATCTC................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................ATGACGAGTTGGTAGATTT........................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................GGGCGTCGCGGTCAA................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:5350637-5350900 + dsi_27462 AACAAGCACAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------TCCCAAAAAC-----------------ACACGC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-CGCCAGTTATTTAATCAAAAACAAAAACATTTGTGTAGAG---ATCTGCTGCTCAAGCAGCTA----AAACTGAATCT-TC-T-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----TCA---TTGTTTCGAT---------------------TTTTTCTGTTT--CCACGTTAAC---------------------CGATCCCATTGTAAA
droSec2 scaffold_5:3623994-3624258 + AACAAGCACAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAAAAAC-----------------ACACGC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-CGCCAGTTATTTAATCAAAAACAAAAACATTTGTGTAGAG---ATCTGCTGCTCAAGCAGCTA----AAACTGAATCT-TC-T-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACCA--ATTCTATAGT----TTA---TTGTTTCGATT--------------------TTTTTCTGTTT--CCACGTTAAC---------------------CGATCCCATTGTAAA
dm3 chr2L:5545562-5545805 + AATAAGCACAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAAAAACA--------------C-ACACAC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-CGCCAATTATTTAATCAAAA------ACATTTGTGTAGAAGACATC------------------------CTGAATCT-TCGT-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----TTA---TTGTTTCGATGT--------------------TTTTGTATTT--CCGCGTTAAC---------------------TAA-TCTATTGTAAA
droEre2 scaffold_4929:5632064-5632330 + AATAG---CAC------A------CGGAAAGC---------ATAA--AACAGA-------------------------------------ACCCAAAA-C-----------------AAACGCTGAGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAA-GGCCAGTACTTTAATCAAAA-----ACATTTTGTGTAGA-----T---CTGCTCAAGCAGCTA----AGAGAGAATCT-TCGT-TTCGTCT----------------------------------------------------G-TACACC----AAT--------------------------------------------------------------------------------------------TCACTTTCTTA----ACCA--ATTCAATAGT----TTA--TTTGTTTCAATGACAACG-TTTCTG--TCCACGTTTTATGTTT--CCACCTAAAC---------------------TGA-TCCATTGTAAA
droYak3 2L:13648852-13649113 - AAA----GCAC------A------CGGAGAGC---------ATAA--ACAAGA-------------------------------------ACCCAAAC-------------------AAACGC--TGAGGTA----CAGAGAT-T--TA--A--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAA-TGCCAGTAATTTAATCAAAA------ACATTTGTGTAGA-----T---CTGCTCAAGCAGCTA----TGAGAGAATCT-TTGT-TTCGTCT----------------------------------------------------G-TGCA--TTCATTT----------------------------------------------------------------------------------------------ACTTTCTTA----ACCA--ATTCTAGAGT--TTTTT---TTGTTTCGATGACAACG-TA-CTG--TCCACGTTTTGTGTTT--CCGCGTTAAC---------------------TGA-TCCACTGTAAA
droEug1 scf7180000409767:98106-98393 + AATAACAACAA------A------GGGAAAGC---------AAC---------------AGCAA----CAACAAACAAACAAACAA--GAATCCACAC-------------------AAACGC--AGAGGTA----CAGAGAT-T--TA--T--TAATCA-GTT----AAGTTAT-----TTTTTGTGGC-CGCAA-GGTCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----A---CAGCCTAAGCAGCTT----AAAGAGAATCT-TTGT-CTCGTCTTCTTCAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------CTATCACTTTCT-----AT-GAAG-TCTTTTAGT----TTA--TTTGTTCCAATGACAAAA-TA-ATT--TCTTCGTTCTGTGTTT--TAACGTTAAC--------------------CCAA-TCTATTGTAAA
droBia1 scf7180000302422:6891958-6892222 + TA--ACTACAG------G------CGGAGAGC---------ATAA--AAAAGA-------------------------------------ACCCACAA-------------------ACACGC--AGAGGTA----GAGAGAT-T--TT--T--TAATCA-GAT----AAGTTAT-----T-TTTGTGGC-CACAG-GGCCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---TGGTCTAAGCAGATT----TCGGAGAAGTT-ACGT-TTCGTTTTCTTTAAAAT--------------------------------------------------TT-------------------------------------------------------------------------C--------------------CTCTCACTTTGT-----A--CAAC--ACTATAGT----TTA---TTGTTCCATTGACAACG-TATTTT--GCCTCTTTTTGTGTTT--CCACGTAAA----------------------CAA-CCTATTGTAAA
droTak1 scf7180000415708:222047-222317 + AATAACAGCAA------A------CGGAAGGC---------ATAT--AAAAGA-------------------------------------ACCCACAG-A-----------------AAACGC--AGAGGTA----CAGAGAA-A--TA--T--TAATCA-GAT----AAGTTAT-----TTTTTGTGGC-CACAA-GGCCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---CGGCTTAAGCAGAAAAAAAAGAGAGAATCT-TCGT-TTCGTTTTCTTCAA--------------------------------------------------ACTCT-------------------------------------------------------------------------C--------------------CTCTCACTTTGT-----A--TGAA--ACTATAGT----TTA---TTGTCCCAATGACAACG-TA-TTT--TTCACGTTTTGTGTTT--CCACGTAAG----------------------CAA--TTATTGTAAA
droEle1 scf7180000491338:408228-408524 + AATAACAACAT------A------CGGAAAGC---------ATATAAAAACGA-------------------------------------ACCCACAA-CA----------------CAACGC--AGAGGTA----CAGAGAT-T--TA--T--TAAACAAACT----AAGTTAT-----TTTTTGTGGC-CGCAA-CGCCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---CTGCTTAAGCAGCTA----AGCGAGAATCT-TCGT-TTCGTCTACT---------------------------------------------------------TTCGTTT------------CTGTTCT-------------------------------------------------CTCTTCCCAATCTAACCCTA------ACCTACACCAAGA--TAAC--TCTTTGGT----TTA---TTGTTCAAATTACAACG-TTCAAT--TCCACGTTTTGTGTTA--CCACCTTAA----------------------CAA-TCTATTGTAAA
droRho1 scf7180000780102:36401-36685 + GATAACATCAT------A------AGGAAAAC---------ATAA--AAAAGA-------------------------------------ACCCACAA-------------------AAACGC-AAGAGGTA----CAGAGAT-T--TA--A--TAATCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAA-CGCCCGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---TTGCTTAAGCAGCTA----AGCGATAATCT-TCGT-TTCGTCTACT---------------------------------------------------------TTCGTTT------------CTGTTCT-----------------------------------ATTTTCTAAACTTAA--------------------CTCACAC------CAAGA--AAGC--TCTTTACT----ATG---TTGTTCAAATGACATCG-TT--TT--TCCACGTTTTGTGTTT--CCATCTAAA----------------------CAA-TCTTTTGTAAA
droFic1 scf7180000453842:688848-689138 - AACAATAAGAA---AAAA------CGGAAAGC---------ATAA--ATAACA-------------------------------------GCCCAACA-CA--------------G-AAACGC--AGAGGTA----CACAGAT-T--TAT-T--TAACCA-GCTAGCTAAGTTAT-----T-TTTGTGGC-TGAAA-CGCCAGTAATTTAATCAAAA-----ATCATTTGTTTAGA-----T---CTGCTTAAGCAGTTA----AGCGATAATCT-TCGT-TT-GTCTACT---------------------------------------------------------TTTGA-----------AAACTGTTCT-------------------------------------------------CATTT-------------------CCACTTACTCCACGA--TAAC--TTTTTAGT----TTA---TTGTTTCAATGACAACT-TTTTTTTGTCCACGTTTCGTCTTT--CCACGTAAT----------------------CAA-TCTATTGTAAA
droKik1 scf7180000302643:255796-256055 - AACAAACACAC------A------CCA-----------------------------------------------------------------CCACAAGC-------------------ACAC--AG----A----GAGATAT-G--TA--G--TAATCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCCC-AGCCAGTAATTTAATCAAAACC---AATATTTGTATAGA-----T---CTGCCCAAGCAGCTA----AGCGATAATTT-CCGT-TTCGTCAACT---------------------------------------------------------TTCACTA------------GTGTTCT-------------------------------------------------C--------------------CTCACCCTTTCC-A----ACAA--ATT--GTAGTTTTT-AACTCTTACTT--CTGACGCGA-TTTCTT--TACTCGTTTATTGTTTATCTCAGTAAG----------------------CCA-GCTTTTGTAAT
droAna3 scaffold_12916:4477862-4478155 + AAAAAGAAGAA------A------AAAAAATC---------CAC-------AA------A-------------------------ACTCAACTCACAC-------------------AAACAC----AGATA----CAGATAC-A-GTA--G--TAATCA-GTT----AAGATAT-----TTTTTGTGGCCCGCAA-CGGCATTAATTTAATCAAAACC-GAAATATTTGTGTGGA-----T---CTGCTTTAGCAGCCA----AGCGATAATCC-TAGT-TTCGTCTACT----------------------------------------------------TCACTTTTGTTCGCC-CCTTAA----------------------------------------------T----------------CC--CTTTAAACCGAA--AGCACTTTCA-----T--TAAC--ACTGTAAT----TTA---CTGTTTCAATGACAAAA-CT-TTT--TCCACGTTTTATGTTA----AGCTAAA----------------------G-ATCATTTTGTAAA
droBip1 scf7180000396737:307133-307445 - AAAAAAAATAA------A------CGAAAAAA---------AAAA--AGAAAA------A-------------------------ACTCAACTCACAC-------------------AAACAC--AGATACACATACAGATAC-A-GTA--G--TAATCA-GTT----AAGATAT-----TTTTTGTGGCCCACAA-CGGCATTAATTTAATCAAAACC-GAAATATTTGTGTGGA-----T---CTGCTTAAGCAGCTA----AGCGATAATCC-TCGT-TTCGTGAAGT--------------------------------TCTCGACCACTTCGTCTACAACACTTTTGTTTGCC-CCTTAAAACCG------------------------------------------------------------------------AA--ACCACTTTCAT-------TAAC-ACTTGTAAT----TTA---CTGTTTCAATGACAAAC-TT--TT--TCCACGTTTTATGTT---------AAG----------------------CTATCATTTTGTAAA
dp5 4_group1:4863012-4863328 + AAAAACACCGCAGCAGCA------C---------------------------------------ACACAC------------------------AC---------------------AAACAC--ACAGAGA----CAGAT---TTGTA--G--TAAT---ACT----AAGTTAT-----TTTTTGTGGCCCGTGT-CGCCGATAATTGAAACAAAA-----AACATTTGTGTTGA-----T---CTGCTCCACCAGCCATGAGAGCGATAATCCATCGTCTTCGTCA------GAATACACCAAACCCAATCCTATCCACGTTT------A--CCGTTTCCATTACATATGTTT-CCCTTTTATAACAGTTCGCTTTAATTTCCCTTTTTAATGTTTCTAAATTTCATGTTCTGTGT----------------------------------------------GT--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGACATTCATTAACTA-CTTTTTGTAAG
droPer2 scaffold_5:353761-354077 - AAAAACACCGCAGCAGCA------C---------------------------------------ACACAC------------------------AC---------------------AAACAC--ACAGAGA----CAGAT---TTGTA--G--TAAT---ACT----AAGTTAT-----TTTTTGTGGCCCGTGT-CGCCGATAATTGAAACAAAA-----AACATTTGTGTTGA-----T---CTGCTCCACCAGCCATGAGAGCGATAATCCATCGTCTTCGTCA------GAATACACCAAACCCAATCCTATCCACGTTT------A--CCGTTTCCATTACATATGTTT-CCCTTTTATAACATTTCGCTTTAATTTCCCTTTTTAATGTTTCTAAATTTCATGTTCTGTGT----------------------------------------------GC--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGACATTCATTAACTA-CTTTTTGTAAG
droWil2 scf2_1100000004851:451182-451399 + TAATTTCA--A------TTAATTTCACAATTCAATAATTTTTCATAAGTTCAA-ACCACAATAA----CAA------------------------C-------------------------AG--AAAAACA----GGAAAAT-T--TT--C--TA----------------------------------------------------------------------------------------------TACGTTGCCA----GTTCCAAATGT-TTTT-TTTGTCACCG--------------------------------------------------------------------------------------------------------TCTCTATATTTAGTATTTTTTAC----------------------------------------------GT--TCTTCA--------ATG---T---TCTTTGGACGAATATT-TTA--TTAACGTTCCCCGCCC--CC----TAACTTGTTCAATG---------TAAAA-CCAACTGTAAA
droVir3 scaffold_12963:19690591-19690723 - GACAAGCACAC------A------CAAACAAC---------AACA--AACAAAACAAACAACAA----CAA------------------------C-A-AA------------TAAACAAAAC--AAACAGA----CAGAAGT-A--TA--T--TA-TCA-ACT----AAGTTATTA--TTTTTTGTGGC-TACCCTAAGTAGTA----AAAGAAAAAGAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droMoj3 scaffold_6500:23511640-23511743 + GCACACACAAA---CAAA------C---AAAC------------------------------------CA------------------------ACAAACAAACAGAAACAGACAA-AAACAA-AAAACAGA----CG--GAA-T--TATATATT-ATCA-GCT----AAGTTATTAATTTTTCTGTGGC-TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:11156317-11156379 - AACAATTACAC------A------CACTAAAC---------ACAC--ACCACA-------------------------------------CCACACAC-------------------ACACAT--AGCCAGA----CAGACAATT--TA--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACAAGCACAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------TCCCAAAAAC-----------------ACACGC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-CGCCAGTTATTTAATCAAAAACAAAAACATTTGTGTAGAG---ATCTGCTGCTCAAGCAGCTA----AAACTGAATCT-TC-T-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----TCA---TTGTTTCGAT---------------------TTTTTCTGTTT--CCACGTTAAC---------------------CGATCCCATTGTAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................TGTGTAGAG---ATCTGCTGCTCAAGCAGC................................................................................................................................................................................................................................................................................................................................27124.0024000200106100041000
....................................................................................................................................................................................................................................TGTGTAGAG---ATCTGCTGCTCAAGCAG.................................................................................................................................................................................................................................................................................................................................2618.00800000000000071000
....................................................................................................................................................................................................................................TGTGTAGAG---ATCTGCTGCTCAAGCAA.................................................................................................................................................................................................................................................................................................................................2615.00500000000000050000
...................................................................................................................................................................................................................................TTGTGTAGAG---ATCTGCTGCTCAAGC...................................................................................................................................................................................................................................................................................................................................2514.00400000001003000000
..................................................................................................................................................................................................................................TTTGTGTAGAG---ATCTGCTGCTCAAGCAGC................................................................................................................................................................................................................................................................................................................................2913.00300000021000000000
.........................................................................................................................................................................................................................................................................................TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTT.............................................................................................................................2712.00200000020000000000
..................................................................................................................................TA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGT......................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000010001000000
...................................................................................................................................................................................................................................TTGTGTAGAG---ATCTGCTGCTCAAGCAGC................................................................................................................................................................................................................................................................................................................................2812.00200000020000000000
.........................................................................................................................................AGAGAT-T--TA--T--TATTCA-GCT----..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
................................................................................................................................................................................................................................CATTTGTGTAGAG---ATCTGCTGCT........................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAT---------------------TTTTTCTGTTT--CCACGTT.......................................2411.00100000001000000000
..................................................................................................................................................................................................................................TTTGTGTAGAG---ATCTGCTGCTCAAGCAG.................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGT----TCA---TTGTTTCGAT---------------------TTT........................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTA----ACAA--ATTCTATAGT----TCA---TT........................................................................................2311.00100001000000000000
...............................................................................................................................................................................................................................................................AGCTA----AAACTGAATCT-TC-T-TTCGTTA----------------------------------------------------A-............................................................................................................................................................................................................................................2711.00100000000000010000
.......................................................................................................................................................................................................................................GTAGAG---ATCTGCTGCTCAAGC...................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................................................GTAGAG---ATCTGCTGCTCAAGCA..................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
........................................................................................................................................................................................................................AACAAAAACATTTGTGTAGAG---A.................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTTT--CCACGTTAAC---------------------CGATCCCATT.....2811.00100010000000000000
......................................................................................................................................................................................................................................TGTAGAG---ATCTGCTGCTCAAGCAG.................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................TCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----................................................................................................2511.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAT---------------------TTTTTCTGTTT--CCACGTTAAC---------------------CGA............3011.00100000010000000000
.............................................................................................CAAAAAC-----------------ACACGC--CGAGGTA----CAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTGTTT--CCACGTTAAC---------------------...............2111.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCA---TTGTTTCGAT---------------------TTTTTCTGTT.................................................2411.00100000000001000000
...........................................................................................................................................................................................................................AAAAACATTTGTGTAGAG---ATC...............................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.............................................................................................................................................................................................................................................................................................TTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTC...........................................................................................................................2511.00100010000000000000
..................................................................................................................................................................................................................ATCAAAAACAAAAACATTTGTGTAGAG---A.................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..................................................................................................................................TA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
................................................................................................................................................................................................................................................................................TCT-TC-T-TTCGTTT----------------------------------------------------G-TACACTTTCGTT................................................................................................................................................................................................................................2611.00100000001000000000
..............................................................................................................................................................................................................................AACATTTGTGTAGAG---ATCTGCTGCTCAA.....................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................TTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----................................................................................................2711.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................TTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACA.................................................................................................................2111.00100001000000000000
.................................................................................................................................................................................................................................ATTTGTGTAGAG---ATCTGC............................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT----TCA---TTGTTTCGAT---------------------TTTTTCTGT..................................................2511.00100010000000000000
...................................................................................................................................................................T----AAGTTAT-----TTTTTGTGGC-CGC................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................................................................................................................................TGTGTAGAG---ATCTGG............................................................................................................................................................................................................................................................................................................................................1560.17100000000100000000
.......................................................................................................................................................................................TTGTGGC-CGCAG-CGA..........................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
droSec2
AACAAGCACAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAAAAAC-----------------ACACGC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-CGCCAGTTATTTAATCAAAAACAAAAACATTTGTGTAGAG---ATCTGCTGCTCAAGCAGCTA----AAACTGAATCT-TC-T-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACCA--ATTCTATAGT----TTA---TTGTTTCGATT--------------------TTTTTCTGTTT--CCACGTTAAC---------------------CGATCCCATTGTAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTCGATT--------------------TTTTTCTGTTT--CCAC..........................................2611.0011000
.................................................................................................................................GTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
..................................................................................................................................................................................................................................TTTGTGTAGAG---ATCTGCTGCTCAAGCAGCT...............................................................................................................................................................................................................................................................................................................................3011.0010010
.......................................................................................................................................................................................................................................................................................T-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTT.............................................................................................................................2811.0011000
........................................................................................................................CGC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.......................................................................................................................................................................................................................................GTAGAG---ATCTGCTGCTCAAGCAGCT...............................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................................AGAG---ATCTGCTGCTCAAGCAGCTA----..........................................................................................................................................................................................................................................................................................................................2411.0010010
dm3
AATAAGCACAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAAAAACA--------------C-ACACAC--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-CGCCAATTATTTAATCAAAA------ACATTTGTGTAGAAGACATC------------------------CTGAATCT-TCGT-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----TTA---TTGTTTCGATGT--------------------TTTTGTATTT--CCGCGTTAAC---------------------TAA-TCTATTGTAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................TA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGT......................................................................................................................................................................................................................................................................................................................................................................................................................26137.003700000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010001012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000100001000000000000000013201700010
..........................................................................................................................C--CGAGGTA----CAGAGAT-T--TA--T--TATTCA-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---TTGTTTCGATGT--------------------TTTTGTATT.................................................2318.0080000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTA---TTGTTTCGATGT--------------------TTTTGTATT.................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
........................CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TAATCAAAA------ACATTTGTGTAGAAGACA.................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTTGTGTAGAAGACATC------------------------CTGAATCT-..............................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGT--------------------TTTTGTATTT--CCGCGTT.......................................2516.0060000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
...............................................................................................................................................................................................................................ACATTTGTGTAGAAGACATC------------------------CTGAATC................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T-TTCGTTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------C...............................................................................................................................2615.0050000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................TTTGTGTAGAAGACATC------------------------CTGAATC................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................AACA--------------C-ACACAC--CGAGGTA----CAGAGAT-T--...............................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000
..........................................................................................................................................................................................................................................................................................TCGTTT----------------------------------------------------G-TACACTTTCGTTTTC.............................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................C-ACACAC--CGAGGTA----CAGAGAT-T--TA--T--........................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................TTTGTGTAGAAGACATC------------------------CTGAATCT-T.............................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................AAACA--------------C-ACACAC--CGAGGTA----CAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTGTGTAGAAGACATC------------------------CTGAATCT-..............................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGAAGATC---------ATAA--TTTAGA-------------------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAC--CGAGGTA----CAGAGAT-T--TA--T--TATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................TCT-TCGT-TTCGTTT----------------------------------------------------G-TACACTTTCGTT................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT--CCGCGTTAAC---------------------TAA-TCTATTGTA..2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CACAC--CGAGGTA----CAGAGAT-T--TA--T--TATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............................................................................................................................................................................................................................................................................................TTT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCT..........................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTA----ACAA--ATTCTATAGT----TTA---TTG.......................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CCCAAAAACA--------------C-ACACAC--CGAGGTA----CAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATAAGCACAC------A------CGAAGATC---------AT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGT--------------------TTTTGTATTT--CCGCGTTAAC---------------------C..............2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................TTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACAA--ATTCTATAGT----T...............................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................T--TA--T--TATTCA-GCT----AAGTTAT-----TTT...........................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCGATGT--------------------TTTTGTATTT--CCGCGT........................................2713.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGT--------------------TTTTGTATTT--CCGCGT........................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000100000
..........................................TAA--TTTAGA-------------------------------------ACCCAAAAACA--------------C-ACACAC--C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TA----CAGAGAT-T--TA--T--TATTCA-GCT----AAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAGT----TTA---TTGTTTCGATGT--------------------TT........................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................ATTTGTGTAGAAGACATC------------------------CTGAATCT-T.............................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........C------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TC------------------------CTGAATCT-TCGT-TTCGTTT----------------------------------------------------G-TACACT......................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................C---------ATAA--TTTAGA-------------------------------------ACCCAAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTA....................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................T-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCAAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GAGGTA----CAGAGAT-T--TA--T--TATTCA-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
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................................................................................................................................................................................................................TAATCAAAA------ACATTTGTGTAGAAGAC..................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGT--------------------TTTTGTATTT--CCGCGTT.......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCT-TCGT-TTCGTTT----------------------------------------------------G-TACACTTTCG..................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CATTTGTGTAGAAGACATC------------------------CTG....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................T-TCGT-TTCGTTT----------------------------------------------------G-TACACTTT....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCT..........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TGTGTAGAAGACATC------------------------CTGAATCT-T.............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CAAAAACA--------------C-ACACAC--CGAGGTA----CAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTTA----ACA.................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATTT--CCGCGTTAAC---------------------TAA-TCTAT......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAG-C............................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AAAA------ACATTTGTGTAGAA.....................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAC--CGAGGTA----CAGAGAT-T--...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ATC------------------------CTGAATCT-TCGT-TTCGTTT----------------------------------------------------G-TAC.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................C--CGAGGTA----CAGAGAT-T--TA--T--TATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................ATCT-TCGT-TTCGTTT----------------------------------------------------G-TACACTTTCG..................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................T----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTT.........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--ATTCTATAGT----TTA---TTGTT.....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................AATCT-TCGT-TTCGTTT----------------------------------------------------G-TACA........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................CGAAGATC---------ATAA--TTTAGA-------------------------------------ACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GAAGACATC------------------------CTGAATCT-TCGT-.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................A-------------------------------------ACCCAAAAACA--------------C-ACACAC--CGAGGTA----C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................A-------------------------------------ACCCAAAAACA--------------C-ACACAC--CGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CAAAA------ACATTTGTGTAGAAGACATC------------------------CTGAA..................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGT--------------------TTTTGTATTT--CCGCGTTA......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................AA--TTTAGA-------------------------------------ACCCAAAAACA--------------C-ACACAC--C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAC------A------CGAAGATC---------ATAA--TTTAGA-------------------------------------ACCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TT----------------------------------------------------G-TACACTTTCGTTTTCC--------------------------------------------------------------------------------------------CTTTCTT.........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGAAGACATC------------------------CTGAATCT-TCGT-TTCG.....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................C-ACACAC--CGAGGTA----CAGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATAAGCACAC------A------CGAAGATC---------ATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATAG---CAC------A------CGGAAAGC---------ATAA--AACAGA-------------------------------------ACCCAAAA-C-----------------AAACGCTGAGAGGTA----CAGAGAT-T--TA--T--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAA-GGCCAGTACTTTAATCAAAA-----ACATTTTGTGTAGA-----T---CTGCTCAAGCAGCTA----AGAGAGAATCT-TCGT-TTCGTCT----------------------------------------------------G-TACACC----AAT--------------------------------------------------------------------------------------------TCACTTTCTTA----ACCA--ATTCAATAGT----TTA--TTTGTTTCAATGACAACG-TTTCTG--TCCACGTTTTATGTTT--CCACCTAAAC---------------------TGA-TCCATTGTAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT--CCACCTAAAC---------------------TGA-TCCATTG....2511.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGTTT--CCACCTAAAC---------------------TGA-TCCA.......2711.0011000000
........................................................................................................................................................................................................................................................CTCAAGCAGCTA----AGAGAGA...................................................................................................................................................................................................................................................................................................................1911.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----ACCA--ATTCAATAGT----TTA--TTTGTTT....................................................................................2711.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--CCACCTAAAC---------------------TGA-TCCAT......2011.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTATGTTT--CCACCG........................................1811.0010001000
.............................AGC---------ATAA--AACAGA-------------------------------------ACCCAAAA-C-----------------AAACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
droYak3
AAA----GCAC------A------CGGAGAGC---------ATAA--ACAAGA-------------------------------------ACCCAAAC-------------------AAACGC--TGAGGTA----CAGAGAT-T--TA--A--TATTCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAA-TGCCAGTAATTTAATCAAAA------ACATTTGTGTAGA-----T---CTGCTCAAGCAGCTA----TGAGAGAATCT-TTGT-TTCGTCT----------------------------------------------------G-TGCA--TTCATTT----------------------------------------------------------------------------------------------ACTTTCTTA----ACCA--ATTCTAGAGT--TTTTT---TTGTTTCGATGACAACG-TA-CTG--TCCACGTTTTGTGTTT--CCGCGTTAAC---------------------TGA-TCCACTGTAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................ATAA--ACAAGA-------------------------------------ACCCAAAC-------------------AAACGC--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................................................................................................................ATTTGTGTAGA-----T---CTGCTCAAGCAGCT...............................................................................................................................................................................................................................................................................................................................2611.00100100000000
......................................................................................................................................................................................................................................................TGCTCAAGCAGCTA----TGAGAGAATCT-T.............................................................................................................................................................................................................................................................................................................2611.00101000000000
droEug1
AATAACAACAA------A------GGGAAAGC---------AAC---------------AGCAA----CAACAAACAAACAAACAA--GAATCCACAC-------------------AAACGC--AGAGGTA----CAGAGAT-T--TA--T--TAATCA-GTT----AAGTTAT-----TTTTTGTGGC-CGCAA-GGTCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----A---CAGCCTAAGCAGCTT----AAAGAGAATCT-TTGT-CTCGTCTTCTTCAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------CTATCACTTTCT-----AT-GAAG-TCTTTTAGT----TTA--TTTGTTCCAATGACAAAA-TA-ATT--TCTTCGTTCTGTGTTT--TAACGTTAAC--------------------CCAA-TCTATTGTAAASizeHit CountTotal NormTotal
No Reads
droBia1
TA--ACTACAG------G------CGGAGAGC---------ATAA--AAAAGA-------------------------------------ACCCACAA-------------------ACACGC--AGAGGTA----GAGAGAT-T--TT--T--TAATCA-GAT----AAGTTAT-----T-TTTGTGGC-CACAG-GGCCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---TGGTCTAAGCAGATT----TCGGAGAAGTT-ACGT-TTCGTTTTCTTTAAAAT--------------------------------------------------TT-------------------------------------------------------------------------C--------------------CTCTCACTTTGT-----A--CAAC--ACTATAGT----TTA---TTGTTCCATTGACAACG-TATTTT--GCCTCTTTTTGTGTTT--CCACGTAAA----------------------CAA-CCTATTGTAAASizeHit CountTotal NormTotal
No Reads
droTak1
AATAACAGCAA------A------CGGAAGGC---------ATAT--AAAAGA-------------------------------------ACCCACAG-A-----------------AAACGC--AGAGGTA----CAGAGAA-A--TA--T--TAATCA-GAT----AAGTTAT-----TTTTTGTGGC-CACAA-GGCCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---CGGCTTAAGCAGAAAAAAAAGAGAGAATCT-TCGT-TTCGTTTTCTTCAA--------------------------------------------------ACTCT-------------------------------------------------------------------------C--------------------CTCTCACTTTGT-----A--TGAA--ACTATAGT----TTA---TTGTCCCAATGACAACG-TA-TTT--TTCACGTTTTGTGTTT--CCACGTAAG----------------------CAA--TTATTGTAAASizeHit CountTotal NormTotal
No Reads
droEle1
AATAACAACAT------A------CGGAAAGC---------ATATAAAAACGA-------------------------------------ACCCACAA-CA----------------CAACGC--AGAGGTA----CAGAGAT-T--TA--T--TAAACAAACT----AAGTTAT-----TTTTTGTGGC-CGCAA-CGCCAGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---CTGCTTAAGCAGCTA----AGCGAGAATCT-TCGT-TTCGTCTACT---------------------------------------------------------TTCGTTT------------CTGTTCT-------------------------------------------------CTCTTCCCAATCTAACCCTA------ACCTACACCAAGA--TAAC--TCTTTGGT----TTA---TTGTTCAAATTACAACG-TTCAAT--TCCACGTTTTGTGTTA--CCACCTTAA----------------------CAA-TCTATTGTAAASizeHit CountTotal NormTotal
No Reads
droRho1
GATAACATCAT------A------AGGAAAAC---------ATAA--AAAAGA-------------------------------------ACCCACAA-------------------AAACGC-AAGAGGTA----CAGAGAT-T--TA--A--TAATCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCAA-CGCCCGTAATTTAATCAAAA-----ATCATTTGTGTAGA-----T---TTGCTTAAGCAGCTA----AGCGATAATCT-TCGT-TTCGTCTACT---------------------------------------------------------TTCGTTT------------CTGTTCT-----------------------------------ATTTTCTAAACTTAA--------------------CTCACAC------CAAGA--AAGC--TCTTTACT----ATG---TTGTTCAAATGACATCG-TT--TT--TCCACGTTTTGTGTTT--CCATCTAAA----------------------CAA-TCTTTTGTAAASizeHit CountTotal NormTotal
No Reads
droFic1
AACAATAAGAA---AAAA------CGGAAAGC---------ATAA--ATAACA-------------------------------------GCCCAACA-CA--------------G-AAACGC--AGAGGTA----CACAGAT-T--TAT-T--TAACCA-GCTAGCTAAGTTAT-----T-TTTGTGGC-TGAAA-CGCCAGTAATTTAATCAAAA-----ATCATTTGTTTAGA-----T---CTGCTTAAGCAGTTA----AGCGATAATCT-TCGT-TT-GTCTACT---------------------------------------------------------TTTGA-----------AAACTGTTCT-------------------------------------------------CATTT-------------------CCACTTACTCCACGA--TAAC--TTTTTAGT----TTA---TTGTTTCAATGACAACT-TTTTTTTGTCCACGTTTCGTCTTT--CCACGTAAT----------------------CAA-TCTATTGTAAASizeHit CountTotal NormTotal
No Reads
droKik1
AACAAACACAC------A------CCA-----------------------------------------------------------------CCACAAGC-------------------ACAC--AG----A----GAGATAT-G--TA--G--TAATCA-GCT----AAGTTAT-----TTTTTGTGGC-CGCCC-AGCCAGTAATTTAATCAAAACC---AATATTTGTATAGA-----T---CTGCCCAAGCAGCTA----AGCGATAATTT-CCGT-TTCGTCAACT---------------------------------------------------------TTCACTA------------GTGTTCT-------------------------------------------------C--------------------CTCACCCTTTCC-A----ACAA--ATT--GTAGTTTTT-AACTCTTACTT--CTGACGCGA-TTTCTT--TACTCGTTTATTGTTTATCTCAGTAAG----------------------CCA-GCTTTTGTAATSizeHit CountTotal NormTotal
No Reads
droAna3
AAAAAGAAGAA------A------AAAAAATC---------CAC-------AA------A-------------------------ACTCAACTCACAC-------------------AAACAC----AGATA----CAGATAC-A-GTA--G--TAATCA-GTT----AAGATAT-----TTTTTGTGGCCCGCAA-CGGCATTAATTTAATCAAAACC-GAAATATTTGTGTGGA-----T---CTGCTTTAGCAGCCA----AGCGATAATCC-TAGT-TTCGTCTACT----------------------------------------------------TCACTTTTGTTCGCC-CCTTAA----------------------------------------------T----------------CC--CTTTAAACCGAA--AGCACTTTCA-----T--TAAC--ACTGTAAT----TTA---CTGTTTCAATGACAAAA-CT-TTT--TCCACGTTTTATGTTA----AGCTAAA----------------------G-ATCATTTTGTAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................ACT----------------------------------------------------TCACTTTTGTTCGCC-CCTTAA----------------------------------------------T----------------CC--C.................................................................................................................................................2811.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACCGAA--AGCACTTTCA-----T--TAAC--ACT.........................................................................................................2811.001010000
..............................................................................................................................................................................................................................AATATTTGTGTGGA-----T---CTGCTTTAGC...................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................C---------CAC-------AA------A-------------------------ACTCAACTCACAC-------------------AAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..........................................................................................................................................................................................................................C-GAAATATTTGTGTGGA-----T---CTGCTT.......................................................................................................................................................................................................................................................................................................................................2411.001000001
................................................................................................................................................................................................................................................................GCCA----AGCGATAATCC-TAGT-TTC......................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGTTA----AGCTAAA----------------------G-ATC..........2011.001010000
AAAAAGAAGAA------A------AAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
AAAAAAAATAA------A------CGAAAAAA---------AAAA--AGAAAA------A-------------------------ACTCAACTCACAC-------------------AAACAC--AGATACACATACAGATAC-A-GTA--G--TAATCA-GTT----AAGATAT-----TTTTTGTGGCCCACAA-CGGCATTAATTTAATCAAAACC-GAAATATTTGTGTGGA-----T---CTGCTTAAGCAGCTA----AGCGATAATCC-TCGT-TTCGTGAAGT--------------------------------TCTCGACCACTTCGTCTACAACACTTTTGTTTGCC-CCTTAAAACCG------------------------------------------------------------------------AA--ACCACTTTCAT-------TAAC-ACTTGTAAT----TTA---CTGTTTCAATGACAAAC-TT--TT--TCCACGTTTTATGTT---------AAG----------------------CTATCATTTTGTAAASizeHit CountTotal NormTotal
No Reads
dp5
AAAAACACCGCAGCAGCA------C---------------------------------------ACACAC------------------------AC---------------------AAACAC--ACAGAGA----CAGAT---TTGTA--G--TAAT---ACT----AAGTTAT-----TTTTTGTGGCCCGTGT-CGCCGATAATTGAAACAAAA-----AACATTTGTGTTGA-----T---CTGCTCCACCAGCCATGAGAGCGATAATCCATCGTCTTCGTCA------GAATACACCAAACCCAATCCTATCCACGTTT------A--CCGTTTCCATTACATATGTTT-CCCTTTTATAACAGTTCGCTTTAATTTCCCTTTTTAATGTTTCTAAATTTCATGTTCTGTGT----------------------------------------------GT--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGACATTCATTAACTA-CTTTTTGTAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................AAACAC--ACAGAGA----CAGAT---T.................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000200000
................CA------C---------------------------------------ACACAC------------------------AC---------------------AAACAC--ACAGAGA----CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2622.0040000000400
...........................................................................................................................................................................................................................................................................................................CACCAAACCCAATCCTATCCACGT...............................................................................................................................................................................................................................................................2411.0010010000000
.................................................................................................................................................................................................................................................................CCATGAGAGCGATAATCCATCGTC.........................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGT----------------------------------------------GT--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGACA.......................2711.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTTCTGTGT----------------------------------------------GT--TCCCCT--------TTG---T---T------------------------------------------------------C..............................2711.0010100000000
........................................................................................................................................................................................................................A-----AACATTTGTGTTGA-----T---CTGCTCCACCAGC................................................................................................................................................................................................................................................................................................................................2911.0010010000000
.........................................................................................................................................................................................................................................TGA-----T---CTGCTCCACCAGCCATGAGAGC.......................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................C--ACAGAGA----CAGAT---TTGTA--G--TAAT---AC...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................AGAGA----CAGAT---TTGTA--G--TA......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000001
..........................................................................................................................................................................................TGGCCCGTGT-CGCCGATAATTGAAA..............................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCATGTTCTGTGT----------------------------------------------GT--TC............................................................................................................2111.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTCTAAATTTCATGTTCTGT..................................................................................................................................................................2111.0010000000010
.........................................................................................................................................................................................................................................................TCCACCAGCCATGAGAGCGATAATCC...............................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................GTGT-CGCCGATAATTGAAA..............................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCTAAATTTCATGTTCTGTGT----------------------------------------------..................................................................................................................2711.0010010000000
......................................................................................................................................................................................................................................TGTTGA-----T---CTGCTCCACCAGCCATGAG..........................................................................................................................................................................................................................................................................................................................2611.0010000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCTAAATTTCATGTTCTGTG.................................................................................................................................................................2411.0010000000100
............................................................................................................................................................................................................AATTGAAACAAAA-----AACATTTGT...........................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...........................................................................................................................................................................................................................................................................................................................ATCCACGTTT------A--CCGTTTCCATTAC.......................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................ATTGAAACAAAA-----AACATTTGT...........................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATGTTCTGTGT----------------------------------------------GT--TCCCCT--------TT..............................................................................................2511.0010010000000
......................................................................................................................AACAC--ACAGAGA----CAGAT---TTGTA--G--........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000100
......................................................................................................................................................................................................................AAA-----AACATTTGTGTTGA-----T---CTGCTCCACC...................................................................................................................................................................................................................................................................................................................................2811.0010010000000
droPer2
AAAAACACCGCAGCAGCA------C---------------------------------------ACACAC------------------------AC---------------------AAACAC--ACAGAGA----CAGAT---TTGTA--G--TAAT---ACT----AAGTTAT-----TTTTTGTGGCCCGTGT-CGCCGATAATTGAAACAAAA-----AACATTTGTGTTGA-----T---CTGCTCCACCAGCCATGAGAGCGATAATCCATCGTCTTCGTCA------GAATACACCAAACCCAATCCTATCCACGTTT------A--CCGTTTCCATTACATATGTTT-CCCTTTTATAACATTTCGCTTTAATTTCCCTTTTTAATGTTTCTAAATTTCATGTTCTGTGT----------------------------------------------GC--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGACATTCATTAACTA-CTTTTTGTAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................CCATCGTCTTCGTCA------GAAT........................................................................................................................................................................................................................................................................................1914.004400000
........................................................................................................................................................................................................................A-----AACATTTGTGTTGA-----T---CTGCT........................................................................................................................................................................................................................................................................................................................................2113.003300000
................................................................................................................................................................................................................................CATTTGTGTTGA-----T---CTGCTCCACC...................................................................................................................................................................................................................................................................................................................................2313.003300000
.................................................................................................................................................................................................................AAACAAAA-----AACATTTGTGTTGA-----T---CTGCT........................................................................................................................................................................................................................................................................................................................................2813.003300000
...........................................................................................................................................................................................................................................................................GATAATCCATCGTCTTCGTCA------GA..........................................................................................................................................................................................................................................................................................2313.003300000
............................................................................................................................................................AT---ACT----AAGTTAT-----TTTTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
..................................................................................................................................................................................................GT-CGCCGATAATTGAAACAAAA-----AAAC................................................................................................................................................................................................................................................................................................................................................................2612.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCTGTGT----------------------------------------------GC--TCCCC.........................................................................................................1912.002200000
........................................................................................................................CAC--ACAGAGA----CAGAT---TTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----------------------------------------------GC--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGAC........................2412.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATGTTCTGTGT----------------------------------------------GC--T.............................................................................................................1812.002200000
..................................................................................................................................GA----CAGAT---TTGTA--G--TAAT---ACT----..........................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................GT----------------------------------------------GC--TCCCCT--------TTG---T---T------------------------------------------------------CAAAGAC........................2212.002200000
..................................................................................................................................................................................................................................................................................CATCGTCTTCGTCA------GAATACACC...................................................................................................................................................................................................................................................................................2312.002200000
...............................................................................................................................AGAGA----CAGAT---TTGTA--G--TAAT---ACT----A.........................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.....................................................................................................................................................................................................................................................................GAGAGCGATAATCCATCGTCT........................................................................................................................................................................................................................................................................................................2111.001001000
.........................................................................................................................AC--ACAGAGA----CAGAT---TTGTA--G--T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATGTTCTGTGT----------------------------------------------GC--T.............................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................GATAATCCATCGTCTTCGTCA------GAAT........................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................AATCCATCGTCTTCGTCA------G...........................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................TATCCACGTTT------A--CCGTTTCCATTACATA....................................................................................................................................................................................................................................2811.001010000
......................................................................................................................AACAC--ACAGAGA----CAGAT---TTGTA--G--TAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
............................................................................................................................................................................................................................................................................ATAATCCATCGTCTTCGTCA------GG..........................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................AC--ACAGAGA----CAGAT---TTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
...........................................................................................................................................................................................................................................................................GATAATCCATCGTCTTCGT....................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................AATCCATCGTCTTCGTCA------GAAT........................................................................................................................................................................................................................................................................................2211.001100000
.....CACCGCAGCAGCA------C---------------------------------------ACACAC------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................ATAATCCATCGTCTTCGTCA------GA..........................................................................................................................................................................................................................................................................................2211.001100000
.....CACCGCAGCAGCA------C---------------------------------------ACAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
AAAAACACCGCAGCAGCA------C---------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTGTGT----------------------------------------------GC--TCCCC.........................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................ATAATCCATCGTCTTCGTCA------GAAT........................................................................................................................................................................................................................................................................................2411.001100000
.....................................................................C------------------------AC---------------------AAACAC--ACAGAGA----CAGAT---TTGTA--G--TA......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.......................................................................................................................................................................................................................................GTTGA-----T---CTGCTCCACCAGCCATGAGAGC.......................................................................................................................................................................................................................................................................................................................2811.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGT----------------------------------------------GC--TCCCCT--------TTG---T---T------------------------------------------------------C..............................2211.001010000
.....................................................................................................................................................................................................................................GTGTTGA-----T---CTGCTCCACCAGCC...............................................................................................................................................................................................................................................................................................................................2211.001001000
...........................................................................................................................................................................................................................................................................................................CACCAAACCCAATCCTAC.....................................................................................................................................................................................................................................................................1820.501100000
droWil2
TAATTTCA--A------TTAATTTCACAATTCAATAATTTTTCATAAGTTCAA-ACCACAATAA----CAA------------------------C-------------------------AG--AAAAACA----GGAAAAT-T--TT--C--TA----------------------------------------------------------------------------------------------TACGTTGCCA----GTTCCAAATGT-TTTT-TTTGTCACCG--------------------------------------------------------------------------------------------------------TCTCTATATTTAGTATTTTTTAC----------------------------------------------GT--TCTTCA--------ATG---T---TCTTTGGACGAATATT-TTA--TTAACGTTCCCCGCCC--CC----TAACTTGTTCAATG---------TAAAA-CCAACTGTAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATT-TTA--TTAACGTTCCCC....................................................2011.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCC--CC----TAACTTGTTCAATG---------TAAAA-C..........2711.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCCGCCC--CC----TAACTTGT................................2111.00101000
......................................................................A------------------------C-------------------------AG--AAAAACA----GGAAAAT-T--...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................................................................................................................................................................................................AATGT-TTTT-TTTGTCACCG--------------------------------------------------------------------------------------------------------TCTCT..................................................................................................................................................................................2411.00100010
...........................................................................................................................................................A----------------------------------------------------------------------------------------------TACGTTGCCA----GTTCCAAATGT-T.............................................................................................................................................................................................................................................................................................................2311.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-TTA--TTAACGTTCCCCG...................................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------ATG---T---TCTTTGGACGAATAT.......................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATT-TTA--TTAACGTT........................................................1811.00100010
....................................................................................................................................................................................................................................................................................TTTT-TTTGTCACCG--------------------------------------------------------------------------------------------------------TCTCTATATTTAGT.........................................................................................................................................................................2811.00100010
droVir3
GACAAGCACAC------A------CAAACAAC---------AACA--AACAAAACAAACAACAA----CAA------------------------C-A-AA------------TAAACAAAAC--AAACAGA----CAGAAGT-A--TA--T--TA-TCA-ACT----AAGTTATTA--TTTTTTGTGGC-TACCCTAAGTAGTA----AAAGAAAAAGAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................TTTTTTGTGGC-TACCCTAAGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................A-TCA-ACT----AAGTTATTA--TTTTTTGTGGC-...................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
........................................................AACAACAA----CAA------------------------C-A-AA------------TAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCACACACAAA---CAAA------C---AAAC------------------------------------CA------------------------ACAAACAAACAGAAACAGACAA-AAACAA-AAAACAGA----CG--GAA-T--TATATATT-ATCA-GCT----AAGTTATTAATTTTTCTGTGGC-TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............AAA------C---AAAC------------------------------------CA------------------------ACAAACAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.002000020
droGri2
AACAATTACAC------A------CACTAAAC---------ACAC--ACCACA-------------------------------------CCACACAC-------------------ACACAT--AGCCAGA----CAGACAATT--TA--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 11:13 AM