ID:

dsi_27449

 Coordinate:

2l:23528645-23528794 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -15.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. dsi_27449  2l:23528765-23528791 -
  2. dsi_27652  x:19732911-19732937 +
star
  1. 2l:20769294-20769318 -
  2. 2l:23185926-23185950 -
  3. 2r:689192-689216 -
  4. 2r:1378649-1378673 -
  5. 2r:2090263-2090287 -
  6. 2r:2131470-2131494 -
  7. 2r:2787397-2787421 -
  8. 3l:22464667-22464691 -
  9. 3r:27151537-27151561 -
  10. dsi_8496  4:472412-472436 -
  11. 4:623819-623843 -
  12. 4:784021-784045 -
  13. 4:1010351-1010375 -
  14. x:16562008-16562032 -
  15. x:20396901-20396925 -
  16. node_27019:1237-1261 -
  17. node_90918:6089-6113 -
  18. node_64906:2535-2559 -
  19. node_39788:9104-9128 -
  20. node_52187:530-554 -
  21. 2l:22171003-22171027 -
  22. 2l:22177711-22177735 -
  23. 2l:22479771-22479795 -
  24. 2l:22605098-22605122 -
  25. dsi_27449  2l:23528713-23528737 -
  26. 2r:240683-240707 -
  27. 2r:1309118-1309142 -
  28. 2r:1558232-1558256 -
  29. x:16871507-16871531 -
  30. x:20772798-20772822 -
  31. 2l:20902572-20902596 +
  32. 2l:21856002-21856026 +
  33. 2l:22614757-22614781 +
  34. 2l:22735685-22735709 +
  35. 2r:2586223-2586247 +
  36. 2r:2619549-2619573 +
  37. 2r:2805827-2805851 +
  38. 2r:16829507-16829531 +
  39. 3l:22601009-22601033 +
  40. 3l:22651280-22651304 +
  41. 3l:22716534-22716558 +
  42. 3l:23711955-23711979 +
  43. 3l:23809631-23809655 +
  44. 4:447029-447053 +
  45. x:3395966-3395990 +
  46. x:18875695-18875719 +
  47. dsi_27652  x:19732965-19732989 +
  48. x:20805971-20805995 +
  49. node_62956:1152-1176 +
  50. node_27742:5209-5233 +
  51. 2l:11133841-11133865 +
  52. 2l:22497684-22497708 +
  53. 2r:1327031-1327055 +
  54. 2r:2854791-2854815 +
  55. 3l:23160762-23160786 +
  56. 3l:23812259-23812283 +
  57. x:108414-108438 +
  58. x:10292327-10292351 +
  59. x:20417135-20417159 +
  60. node_44328:2239-2263 +
  61. node_76011:5336-5360 +
  62. node_62956:5968-5992 +
  63. node_52186:1122-1146 +
  64. node_52714:2413-2437 +
  65. node_11571:4809-4833 +
  66. 2r:14154828-14154852 +
  67. 3l:18113680-18113704 +
  68. 2l:21184204-21184228 -
  69. 2l:22729545-22729569 -
  70. 2r:323343-323367 -
  71. dsi_4413  2r:3195049-3195073 -
  72. 3l:19327804-19327828 -
  73. 3l:19646524-19646548 -
  74. 3l:22791339-22791363 -
  75. 3r:64580-64604 -
  76. x:18821712-18821736 -
  77. x:19481428-19481452 -
  78. node_22030:7625-7649 -

Sense Strand Reads

TTTTAATTTGTTTCTCATTTTATTCACCAATATCTATCGATATCCCAGAAAAATGATTATATTTCGCGTTCGCATTCACAGTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATTCTCTTTTGTTCGGTATAAATATGTTTGAATATTCATTGATTTGCAACTTTTTTACTTCTTTTTTTGTACAGGTAACATAAGTGAAATAATTTCCCTGGTGCCCGAAATCGAACGACGAATG
*****************************************************.((...(((.(((.((((.......(((((.(((.....))).)).))).........)))).)))..)))......))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 GSM343915
embryo
 SRR902009
testis
 M025
embryo
 M023
head
 M024
male body
.....................................................TGATTATATTTCGCGTTCGCATTCACA.......................................................................................................................................................................... 27 0 2 2.00 4 1 0 0 2 1 0 0 0 0 0 0 0
..........................................TCCCAGAATAATGATTATATTTCGCGT..................................................................................................................................................................................... 27 1 3 2.00 6 0 0 1 5 0 0 0 0 0 0 0 0
...........................................................................................................CGGGGAACTCGACTATAGCATTCTC...................................................................................................................... 25 0 20 1.60 32 0 28 4 0 0 0 0 0 0 0 0 0
.....................................................................................TGAGTAACGGGTATCTGATAGTCGGGG.......................................................................................................................................... 27 0 20 1.10 22 22 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGAGTAACGGGTATCTGATAGTCGGGGA......................................................................................................................................... 28 0 20 0.80 16 0 0 16 0 0 0 0 0 0 0 0 0
..................................................TAATGATTATATTTCGCGTTCGCATT.............................................................................................................................................................................. 26 1 3 0.67 2 0 0 1 1 0 0 0 0 0 0 0 0
........................................TATCCCAGAATAATGATTATATTTCGCGT..................................................................................................................................................................................... 29 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................TTATATTTCGCGTTCGCATTCACA.......................................................................................................................................................................... 24 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTTTT.................................................................................................................. 26 0 7 0.57 4 0 4 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGAGTAACGGGTATCTGATAGTCGG............................................................................................................................................ 25 0 20 0.50 10 0 0 10 0 0 0 0 0 0 0 0 0
................................................................................................................................TCTCTTTTGTTCGGTATAAATATGTT................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCGACTATAGCCTTCTCTTTTGTTC.............................................................................................................. 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCCCTGGTGCCCGAAATCGAA......... 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................AACTCGACTATAGCATTCTCTTTTGT................................................................................................................ 26 0 8 0.50 4 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................TGATTATATTTCGCGTTCGC................................................................................................................................................................................. 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................GCATTCACAGTAGCTGAGTAACGG........................................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................TGATTATATTTCGCGTTCGCAT............................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCAGTCTCTTTT.................................................................................................................. 26 1 7 0.43 3 0 3 0 0 0 0 0 0 0 0 0 0
.................................................................................TAGCTGAGTAACGGGTATCTGATA................................................................................................................................................. 24 0 20 0.40 8 0 8 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCGACTATAGCATTCTCTTTTGTT............................................................................................................... 24 0 11 0.36 4 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGTTGGGTATATATATGGTTGA............................................................................................. 23 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................CCCAGAATAATGATTATATTTCGCGT..................................................................................................................................................................................... 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................TGATTATATTTCGCGTTCGCATTCACAT......................................................................................................................................................................... 28 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTT.................................................................................................................... 24 0 9 0.33 3 0 3 0 0 0 0 0 0 0 0 0 0
........................................TATCCCAGAATAATGATTATATTTCGCGTT.................................................................................................................................................................................... 30 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AGAATAATGATTATATTTCGCGTT.................................................................................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................CCAGAATAATGATTATATTTCGCGTT.................................................................................................................................................................................... 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................TCCCAGAATAATGATTATATTTCGCGTT.................................................................................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TTATATTTCGCGTTCGCATTCACATT........................................................................................................................................................................ 26 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................TGATTATATTTCGCGTTCGCATTCACATA........................................................................................................................................................................ 29 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................TATCTGATAGTCGGGGAACTCGACT................................................................................................................................. 25 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0
.........................................................TATATTTCGCGTTCGCATTCACATT........................................................................................................................................................................ 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTTAT.................................................................................................................. 26 1 9 0.22 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTCGACTATAGCATTCTCTTTTGTT............................................................................................................... 25 0 9 0.22 2 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................GTAGCTGAGTAACGGGTATCTGATA................................................................................................................................................. 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................CAGTAGCTGAGTAACGGGTATCTGAT.................................................................................................................................................. 26 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................TCGACTATAGCATTCTCTTTTGT................................................................................................................ 23 0 11 0.18 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................TATCTGATAGTCGGGGAACTCGA................................................................................................................................... 23 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0
.................................................................................TAGCTGAGTAACGGGTATCTGATAGT............................................................................................................................................... 26 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0
...........................................................TATTTCGCGTTCGCATTCACATTAGCTGA.................................................................................................................................................................. 29 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................TATTTCGCGTTCGCATTCACATTAG...................................................................................................................................................................... 25 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................CGGGGAACTCGACTATAGCAGTCTCTT.................................................................................................................... 27 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTGTAGCATTCTCATTTG................................................................................................................. 27 2 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCAGTCTCTTT................................................................................................................... 25 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................CCCAGAAAAATAATCATGTTTCGCGTT.................................................................................................................................................................................... 27 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTTT................................................................................................................... 25 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTCGACTATAGCATTCTCTTTTGT................................................................................................................ 25 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................ACAGTAGCTGAGTAACGGGCA........................................................................................................................................................ 21 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................GAACTCGACTATAGCATTCTCTTTTG................................................................................................................. 26 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................GGGTATCTGATAGTCGGGGA......................................................................................................................................... 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................AACTCGACTATAGCATTCTCTTTTG................................................................................................................. 25 0 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................AGCTGAGTAACGGGTATCTGATAGT............................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCTGTTCGGTATAAA...................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATACTCTTT................................................................................................................... 25 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GTCGGGGAACTCGACTATAGCATTCTC...................................................................................................................... 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0
..............................................................................................................GGAACTCGACTACAGCATTCTCTT.................................................................................................................... 24 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGCATTCACTTTTGTTCTG............................................................................................................ 19 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTTA................................................................................................................... 25 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGATTATAGCATTCTCTTTT.................................................................................................................. 26 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GGGGAACTCGACTATAGCATTCTGTTT................................................................................................................... 27 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGATTATAGCATTCTCTTT................................................................................................................... 25 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGGAACTCGACTATAGCATTCTGTTT................................................................................................................... 26 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTGTTT................................................................................................................... 25 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTGTTTTAT................................................................................................................ 28 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
......................TTCACCAATATCTATCGATATCCCAGA......................................................................................................................................................................................................... 27 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................TCACCAATATCTATCGATATCCCAGA......................................................................................................................................................................................................... 26 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTTATC................................................................................................................. 27 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGATTATAGCATTCTCATTT.................................................................................................................. 26 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGAATTCTGTTT................................................................................................................... 25 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATTCTCTTATTT................................................................................................................ 28 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTCGACCATAGCATTCTCTT.................................................................................................................... 21 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATAGCATTCTCTTTTGTT............................................................................................................... 18 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................GGGAACTCGACTACAGCATTCTCTT.................................................................................................................... 25 1 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................GGAACTCGATTATAGCATTCTCTTTTA................................................................................................................. 27 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGGAACTCGACTATAGCAATCTCTT.................................................................................................................... 25 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTACAGCATTCTCTTT................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TAGCTGAGTAACGGGTATCTGA................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................CGGGTATCTGATAGT............................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGAGTAACGGGTATCTGATAGTCGGGGACC....................................................................................................................................... 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GGTATCTGATAGTCGGGG.......................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTTTTGGACAGATAAC............................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................TATCTATCGATATCCCAGAAAA...................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................GATAGTCGGGGAACTCGACT................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................CGGGGAACTCGACTATAGCATTC........................................................................................................................ 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................TATCTATCGATATCCCAGAAA....................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................AGTAACGGGTATCTGATAGTCGGGG.......................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................GGTATCTGATAGTCGGGGAACTCG.................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TAGCTGCGTAACGGGTATCTGA................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATCTGATAGTCGGGGAACTCGAC.................................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TGAGTAACGGGTATCTGATAGTCAGGGA......................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GCTGAGTAACGGGTATCTGATA................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................GGGGAACTCGACTATAGCATTCTC...................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GGAACTCGACTATAGCATT......................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TAACGGGTATCTGATAGTCGGG........................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TAGTCGGTGAGTAACGGGTATCTGA................................................................................................................................................... 25 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................AACGGGTATCTGATAGTCGGGGAAC....................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................GATATCCCAGAAAAATGAT................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................TCTGATAGTCGGGGAACTCGACTAT............................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAAATTAAACAAAGAGTAAAATAAGTGGTTATAGATAGCTATAGGGTCTTTTTACTAATATAAAGCGCAAGCGTAAGTGTCATCGACTCATTGCCCATAGACTATCAGCCCCTTGAGCTGATATCGTAAGAGAAAACAAGCCATATTTATACAAACTTATAAGTAACTAAACGTTGAAAAAATGAAGAAAAAAACATGTCCATTGTATTCACTTTATTAAAGGGACCACGGGCTTTAGCTTGCTGCTTAC
**********************************************************************************************************************.((...(((.(((.((((.......(((((.(((.....))).)).))).........)))).)))..)))......))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 M053
female body
 SRR1275483
Male prepupae		 GSM343915
embryo
..............................................................AAGCGCAAGCGTAAGTGT.......................................................................................................................................................................... 18 0 20 5.55 111 110 1 0 0 0 0 0 0 0 0 0
............AGAGTAAAATAAGTGGTTATAGATA..................................................................................................................................................................................................................... 25 0 10 2.40 24 0 1 8 7 4 4 0 0 0 0 0
...........AAGAGTAAAATAAGTGGTTATAGATA..................................................................................................................................................................................................................... 26 0 9 1.00 9 0 3 2 2 1 1 0 0 0 0 0
...........................................................ATAAAGCGCAAGCGTAAGTGTCAT....................................................................................................................................................................... 24 0 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0
................................AGATAGCTATAGGGT........................................................................................................................................................................................................... 15 0 20 0.65 13 0 13 0 0 0 0 0 0 0 0 0
.............................TATAGATAGCTATAGGGTCTTTTT..................................................................................................................................................................................................... 24 0 20 0.60 12 0 1 5 6 0 0 0 0 0 0 0
......................AAGTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 25 0 14 0.57 8 0 8 0 0 0 0 0 0 0 0 0
...................................................................CAAGCGTAAGTGTCATCGACTCAT............................................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.........CAAAGAGTAAAATAAGTGCTTATAGATA..................................................................................................................................................................................................................... 28 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................CGCAAGCGTAAGTGTCATCGACTCAT............................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.....................TAAGTGGTTATAGATAGGTATAGGGT........................................................................................................................................................................................................... 26 1 15 0.47 7 0 0 0 4 3 0 0 0 0 0 0
............................................................TAAAGCGCAAGCGTAAGTGTCA........................................................................................................................................................................ 22 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.......................AGTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 24 0 15 0.27 4 0 3 0 0 1 0 0 0 0 0 0
.............................TATAGATAGCTATAGGGTCTTTT...................................................................................................................................................................................................... 23 0 20 0.25 5 0 0 0 2 2 0 0 0 0 0 1
............AGAGTAAAATAAGTGCTTATAGATA..................................................................................................................................................................................................................... 25 1 16 0.25 4 0 0 3 0 0 1 0 0 0 0 0
.......................AGTGGTTATAGATAGGTATAGGGT........................................................................................................................................................................................................... 24 1 17 0.24 4 0 0 0 3 1 0 0 0 0 0 0
..........................................................................................................................................................................ACGTTGAAAAAATGATG............................................................... 17 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................ACATAAAGCGCAAGCGAAAG............................................................................................................................................................................. 20 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
................................AGATAGCTATAGGGTCTTTTTACT.................................................................................................................................................................................................. 24 0 20 0.20 4 0 0 1 0 2 1 0 0 0 0 0
........................................................................................................TCAGCCCCTTGAGCTG.................................................................................................................................. 16 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
......................AAGTGGTTATAGATAGGTATAGGGT........................................................................................................................................................................................................... 25 1 16 0.19 3 0 0 0 1 2 0 0 0 0 0 0
....................................................................AAGCGTAAGTGTCATCGACTCATTACC........................................................................................................................................................... 27 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................ATAAAGCGCAAGCGTAAGTGT.......................................................................................................................................................................... 21 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.....................TAAGTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 26 0 13 0.15 2 0 2 0 0 0 0 0 0 0 0 0
............AGAGTAAAATAACTGGTTATAGATA..................................................................................................................................................................................................................... 25 1 13 0.15 2 0 0 1 0 0 1 0 0 0 0 0
...........................................................................................................GCCCCTTGAGCTGATATCGT........................................................................................................................... 20 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
................................................................................................ATAGACTATCAGCCCCTTGAGCTG.................................................................................................................................. 24 0 20 0.15 3 0 0 0 1 2 0 0 0 0 0 0
..............................ATAGATAGCTATAGGGTCTTTTTACT.................................................................................................................................................................................................. 26 0 20 0.15 3 0 0 1 0 1 0 0 1 0 0 0
............................TTATAGATAGCTATAGGGTCTTTT...................................................................................................................................................................................................... 24 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
.....................GAGGTGGTTATAGATAGCTATAGGGTCTTT....................................................................................................................................................................................................... 30 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.............................TTTAGATAGCTATAGGGTCTTTTAACTAAT............................................................................................................................................................................................... 30 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................ATAAAGCGCAAGCGTA............................................................................................................................................................................... 16 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CTTGAGCTGATATCGTAAGAGAAAAC................................................................................................................. 26 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
.........................TGGTTATAGATAGCTATAGGGTCTT........................................................................................................................................................................................................ 25 0 20 0.10 2 0 1 0 0 0 1 0 0 0 0 0
...............................TAGATAGCTATAGGGTCTTTTT..................................................................................................................................................................................................... 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...........AAGAGTAAAACAAGTGGTTATAGATA..................................................................................................................................................................................................................... 26 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
................................................................GCGCAAGCGTAAGTGT.......................................................................................................................................................................... 16 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
............................TTATAGATAGCTATAGGGTCTTTTT..................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0
................................AGATAGCTATAGGGTCTTTTTACTA................................................................................................................................................................................................. 25 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
..............................ATAGATAGCTATAGGGTCTTTTTAC................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0
..........AAAGAGTAAAATAAGTGGTTATAGAT...................................................................................................................................................................................................................... 26 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.............GAGTAAAATAAGTGGTTATAGATA..................................................................................................................................................................................................................... 24 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................ATAAACCGCAAGCGTAAGTGT.......................................................................................................................................................................... 21 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TGAGCTGATATCGTAAGAGAAA................................................................................................................... 22 0 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
............AGAGTTAAATAAGTGGTTATATATAGCTA................................................................................................................................................................................................................. 29 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
........................GTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 23 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
......................ATGTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
............................................................TAAAGCGCAAGCTTAAGTGTCC........................................................................................................................................................................ 22 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
.......................CGTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 24 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................TGGTTATAGATAGCTATAGGGTCTTT....................................................................................................................................................................................................... 26 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATGTAAAGCGCAAGCGTAAGTG........................................................................................................................................................................... 22 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.......................TGTGGTTATAGATAGCTATAGGGT........................................................................................................................................................................................................... 24 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............AGAGTTAAATAAGTGGTTATATATA..................................................................................................................................................................................................................... 25 2 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CTCATTGCCCATAGACTATCAGCCCC.......................................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................TTGGTTATAGATAGCCATAGGGTCTTTT...................................................................................................................................................................................................... 28 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................TTGCCCATAGACTATCAGCCCCTTGAGCT................................................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................CTATCAGCCCCTTGAGCTGATATCGT........................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...............................TAGATAGCTATAGGGTCTTTTTAC................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............AGTTGAATAAGTGGTTATTGAT...................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................GACTCATTGCCCATAG...................................................................................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............AGAATAAAATAATTGGTTATAGATAGCT.................................................................................................................................................................................................................. 28 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................TGGTTATAGATGGCTATAGGGTCT......................................................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................CTTGAGCTGATATCGTAAGAG...................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.........................TGGTTATAGATAGCCATAGGGTCTTT....................................................................................................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................TAAGTGGTTATAGATAG.................................................................................................................................................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........AAAGAGTAAAATAAGTGGT............................................................................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........AAGAATAAAATAATTGGTTATAGATA..................................................................................................................................................................................................................... 26 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................TAAAATAAGTGGTTATAGATA..................................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................CATAGACTATCAGCCC........................................................................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............ACAGTAAAATAAGTGCTTATAGATA..................................................................................................................................................................................................................... 25 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................AGATAGCTATAGGGTCTTT....................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................TTGCTATAGGGTCTTTTTACT.................................................................................................................................................................................................. 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................CCCCTTGAGCTGATATCGT........................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................TTAAAGCGCAAGCGTAAGTGTCAT....................................................................................................................................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GCCCATAGACTATCAGCCCCTTGAGC.................................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.................................GATAGCTATAGGGTCTTTTTACT.................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................TTGCCCATAGACTATCAGCCCCTT........................................................................................................................................ 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................ATAGATAGCTATAGGGTCTTTTT..................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................ATAGCTATAGGGTCTTTTTACT.................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:23528595-23528844 - dsi_27449 TTTTAATTTG-----TTTCTCATT------T----------TAT-----TCACCAATATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------AAA----------------------ATGATTATATT------TCG-CGTTCGCATTCACAG--------TAGCTGAGTAACGGGTATCTGATAGTCGGGGAA----CTCGACTATAGC-ATTCTCTTTTGTTCGGT------ATAAATAT---GTTTGAA-----T---ATTCATTGATTTGCAA----------------------------------------------------------------CTTTTTTAC----------TTCTTTTTTTG---TACAGGTAACATAA------GTGAAATAATTTCCC----TGGTGCC-------------------------------------------CGA-AATC-GAACGACGAATG
droSec2 scaffold_8:3287788-3288042 + dse_1586 TATTAATTTT-----TTTCTCATT------T----------TAT-----TCACCAATATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------AAA----------------------ATGATTATATT------TCG-CGTTCGCATTTACAG--------TAGCTGAGTAACGGGTATCTGATAGTCGGGGAA----CTCGACTATAGC-ATTCTCTTTTGTTCGGT------ATAAATAT---GTTTGAATACCAT---ATTCATTGATTTGCAA----------------------------------------------------------------CTTTTTTAC----------TTCGTTTTTTG---TACAGGTAACATAA------GTGAAATAATTTCCC----TGGTGCC-------------------------------------------CGA-AATC-GAACGACGAATG
dm3 chrU:1876136-1876363 + TTTTAAATTT-----TTTCTTATT------T----------TAT-----TCGCCAATATCTATCGAT--ATCGCAAC------------------------------------------------------------------------------------------------AAAT-----------------------GATGAAATT------TCG-TCTTCGCATTTACAC--------TAGCTTGGTAACTGGTATCTGATAATCGGGGAA----CTCGACCATAGC-ATTCTCTCTCGTTTTTT------TATT------------------------------ATTAT---------------------TTTTTCTCTTATTTATTCAAAT-------------------------ATTATTCAC----------TT-------------------------------------------------------GCTCATATGCATGAAATAGAAGTAGAAAAACA--------GGTACAAGA--------------A-AT
droEre2 scaffold_3528:3853-4114 - TTTAAAGTTG-----TTTATCATT------T----------TAT-----TATTT----TATCCCGAT--ATTCCCGA------------------------------------------------------------------------------------------------AAAT-----------------------TTTGAAATT------TCT-CAATAGCACTTCCAC--------TAGCTGAGTAACGGGTATCTGATAGTCGGGGAA----CTCGACTGTAGC-ATTCTATCTTGTTTCGG------TTTAATAT---TTAAGA-TTTTGT---ATTCGAAGGTTATTAA--T--TTTTTGTCGTTG-----------------------------------------------GTCTAATTT----------G-------AGAAAATTTAGTTTACAAAA------TTAAAATAATTAGTTAAAAATTAGCC-------------------------------------------CAA-AAAC-GAAAAACGAAAA
droYak3 4:606288-606527 + TTTAATTTTA-----TT----ATT------T----------TCT-----TC--AAATTTCTACCGAT--ATTTGAGA------------------------------------------------------------------------------------------------AAAT-----------------------TTTATAATT------TCT-TGTTCGCACTTGCAC--------TGCCTGACTAACGGGTGTCTGATAGTCGGGGCT----CTCGACTATAGC-ATTCTTTCTAGTTTTAAAT----ATATAATTATTGTAAGAG------TAC----------------ATCAT-CGGCTTGCCG------------------------------------------------AAT-CTAGT----------TTTGTTTTCGT---TAAAATAAACGTAT------GCTGCGTAG------------CTGTC-------------------------------------------CTA-GAATCGGACGTGGA-GT
droEug1 scf7180000408106:1392-1614 - ACTATCAGTT----ACTCAACATT------C----------T-------------------------------------------------------------------------TTCTTCGACAATAGGTGGCGCC----------------------------------------TTGTGGATTTCCACTAGCAAAAT------------------------GAATATTTGAAAATTGTGTAAAACAGTAACGGGTATCTTATAGTCGCGGCA----CTCGACTATAGC-GTTTCCTGTGGTTTAAT------AATT------------------------------GATTT---------------------TTTAACACCT---------------------TTAAATTTTTGAACAG--------A----------TTCTTTTTTCA---TAACAATATTATAG------ACGCCACAGTTTTC---------------------------------------------------------------------------C
droBia1 scf7180000301379:47641-47906 - CTTAAATCTGTCAG-ACTCCAA--------------------AA-----TTTCA----TTTACTGAA--GTATCCG-------------------------------------------------TTAGGTGGCGCCCCAAAATACCG----------CT-----------------TTG------------------CTGGTTATATATCTCCATTACCTTTTGCA--CCCTT--------AAGCTGTGTAACGGGTATCTGGTAGT--GGGCA----CAAGACTATAGC-GTTCTTCCTTGTTTTTT------TTAAATTC---AAAA--GTAA------------------TG--AATGCTTTTTTTTGTAA-----------------------------------------------TTATTATTT----------T-------TTATAACTGAGATTACCAATTCATTTCAAAAGTA--ATTCT----TGGGGCT-------------------------------------------CAA-AGTC-A----------A
droTak1 scf7180000415277:63369-63621 - TTTCAAATCG-----GACC-----------------------ATTCATT-----A--------------------------------------------------------------------------------------------------AAAAGTTATACGCAATC---AAA----------------------ATTTATATATC----TATCT-CCCTCGCACTCCCTT--------TAGCTGAGTGACGGGTATTAGATAGTCGGGACACCAACCCGACTATAGC-ATTCTCTCTTGTTTTAGAT----TTAATTTT---TTCCAAATAG---TTC----------------AATAT-TTTTTTTACAA-----------------------------------------------TTTATATAC----------CTACACTTTTT---TTAAGATAAGCTTA------TTTAAAAAAATTATT----TGATTTA-------------------------------------------CAATTATT-TAATGACAA-AA
droEle1 scf7180000491143:4696-4901 - TTCCACTTAG-----GTTCTAGTG------T----------TGT-----CTATGCAGTTCGATAGAT--GGC--------------------------------------------------------------GCC------------------------------ACCTAAAGT----------------------TTGATTGTAAC------T-T-ACTTTGAAGT-TAGT--------TGACTGAGTAACGGGTATCTAATAGTCGGAAGA----CTTGACTTTAGC-GTTCTCTCTTGTTTTTC------TTAGCTTT---GT----------------------------------------------------------------------------------A-----------CTCTTTCACAACACATTTATCCGTTTT---------AGGTAACACAC------ATGTGACAGTTT------------------------------------------------------------------------------
droRho1 scf7180000778594:21239-21458 - TTTCAAATCG-----GATC-----------------------ATTCGTT-----A--------------------------------------------------------------------------------------------------AAAAGTTATGCGTGATC---AAA----------------------GTTTCTATCTC----CATCT-CCCTCGCACTCCCTT--------TACCTGAGTAACGGGTATCTGATAGTCGGGGCA----CCCGACTATAGC-GTTCTCTCTTGTTTAGA-T--ATATTT-TTT---GTTTGAA-----------------------------------------------------------------------------------------CGATTTTA-----------TTCAATTT---------GGG----------------------------------------TACATGTTATAGAGTAATGCATTAAAATACTTTTTCTGATTCCATA--------------A-AT
droFic1 scf7180000454077:491806-491916 + TTTTGTGTAT-----TT------------------------------------------------AT--GTTCCGAG------------------------------------------------------------------------------------------------GAAT------------------------------------------------------------------------------------------------------AACAACT-------------------------------------------------------------------AATAA----------------------------------------------------------------CTCTTTGAT----------T--TTCTTTTA---TACAGGTAACATAA------GTGAAATAATATCTC----TGGTGCC-------------------------------------------CGA-CATT-GAGCGACGGATG
droKik1 scf7180000302395:392238-392313 + AACTTCTGTC----TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATTT---TTCAGGTAACATTA------GTGAAATCATTTCCT----TGGTGCC-------------------------------------------CGA-AATA-GAGCGACGCATG
droAna3 scaffold_12911:80435-80613 + CATTTTTTTT-----GAG---AAT------A----------TATTCTTT-----A--------------------------------------------------------------------------------------------------AAAAG----------------------------------------TTAATTATAGT------T---------TCTGTGGAA--------AATATGAATACCGGTTATCATATAGTCGGAAAA----CTTGACTATAGACGTCCTATAGTATTTTTGTTTTATATATTTAT---TT----------------------------------------------------------------------------------------------------------------------------------AGG----------------------------------------TATGTTTAATAATGAGCTGCAGAAAAATA--------TTTAAAATC----------ATTTT-TT
droBip1 scf7180000396580:56864-57099 + TATAGACTTT-----TAAGTCTG-------------------GTTTG--TTGAGAATCCATAGCGAA--AGCTTAAA-----------------------------------------------------------------GTTTAAACTTTAAATG----------------------------------------TTAGT--------------T-AAATTGTGGGTGGAA--------GAGATAAGTACCGGGTATAATGTAGTCGGGAAA----CTCGACTATCCCCGTTATCTCTTGTCTCTT------GCAGA-------------GGG---T-----------------------------------AT-----TATGATTATTCGACAATTGTTGACTTAAAATTTTGCGTAC-ACCCT-TC----------T--TTCCTTTG---AACGCAGAATACAA------GTCA------------------------------------------------------------------------------------AA
dp5 3:9376174-9376246 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTACTGGGTATTTAATAGTCGGAAAA----CTCGACTACATC-TCTTTAGTTTGTTGTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG---------------TT----------------------------------------TTC---------------ATTAAT
droPer2 scaffold_15:1596914-1596981 - TTTACTTTCT-----TCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGAATATCA------CAGAAATCATATCCT----TGGTGCC-------------------------------------------GGA-GATC-GAGCGCATGATG
droWil2 scf2_1100000004908:43750-43953 - TTTTAGTTCG-----CTTTTTATTTGCAGCACTTTAGTTTATAT-----TTGAAATTTTTTATTGATGAATCCTATATATTTGTTTGCACTTATTGTATATAAAATTAATAGTCGTTGATTGGAAATAGTTTATAAT----------------------------------------TTGTATGTGTTATCGAAGAGAAA------------------------CAA-----------------------------------------------------------------------------------------------T---GTGTGGAAATTCG---TATCATTTATTTTCAT----------------------------------------------------------------TTTTTTCAC----------TTTGTTTTTTG----------------------------------------------------------------------------------------------------------------T
droVir3 scaffold_12970:10411241-10411316 - TTCATTTTTA-----TTTTGCAGT------C----------AAA-----TC-----------------------AAATATGTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----C---ATTGATTAATTTGCAA----------------------------------------------------------------TTGTTTTTA----------T---TTTTTTA---TG--------------------------------------------------------------------------------------------------------C--A
droMoj3 scaffold_6680:15374627-15374738 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTATCTCCTAGTCGAGCAG---TCTCGACTAGAGC-CTTCTTACTTGTTTTAT------ATAAATAA---ATAA------------ATTTGTCTATATAAAT----------------------------------------------------------------ATTGTTTGC----------TCTTTTTATTT---TATA------------------------------------------------------------------------------------------------TTAATAT-AA
droGri2 scaffold_15203:3177116-3177240 + TTTATCGATA------------------------------------------------------------ACCAAAAAGTATTTTC-------------------------------------------------------------------------------------------ATATTGAACACGACA------------------------AG-TATCTGAATATTTAA--------AAACTGAGTTCAGAGTATCTGCTAGTTGAGGTA----TTTGAATAGAAC-ATTATTACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---------------TT----------------------------------------TTG---------------TTT--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTAATTTG-----TTTCTCATT------T----------TAT-----TCACCAATATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------AAA----------------------ATGATTATATT------TCG-CGTTCGCATTCACAG--------TAGCTGAGTAACGGGTATCTGATAGTCGGGGAA----CTCGACTATAGC-ATTCTCTTTTGTTCGGT------ATAAATAT---GTTTGAA-----T---ATTCATTGATTTGCAA----------------------------------------------------------------CTTTTTTAC----------TTCTTTTTTTG---TACAGGTAACATAA------GTGAAATAATTTCCC----TGGTGCC-------------------------------------------CGA-AATC-GAACGACGAATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................TGATTATATT------TCG-CGTTCGCATTCACA............................................................................................................................................................................................................................................................................................................................................2722.00400000002110000000
............................................................................................................................................................................................................................................................................CGGGGAA----CTCGACTATAGC-ATTCTC...........................................................................................................................................................................................................................................................................25201.6032000000400000280000
......................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGG....................................................................................................................................................................................................................................................................................................27201.1022000000002200000000
......................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGGGGA...................................................................................................................................................................................................................................................................................................28200.8016000000160000000000
..........................................................................................................................................................................................................TTATATT------TCG-CGTTCGCATTCACA............................................................................................................................................................................................................................................................................................................................................2430.67200000010010000000
...............................................................................................................................................................................................................................................................................GGAA----CTCGACTATAGC-ATTCTCTTTT.......................................................................................................................................................................................................................................................................2670.57400000000000040000
......................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGG......................................................................................................................................................................................................................................................................................................25200.5010000000100000000000
......................................................................................................................................................................................................................................................................................................TCTCTTTTGTTCGGT------ATAAATAT---GTT............................................................................................................................................................................................................................................2620.50100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCC----TGGTGCC-------------------------------------------CGA-AATC-GAA.........2120.50100001000000000000
.................................................................................................................................................................................................................................................................................AA----CTCGACTATAGC-ATTCTCTTTTGT.....................................................................................................................................................................................................................................................................2680.50400000020200000000
.......................................................................................................................................................................................................TGATTATATT------TCG-CGTTCGC...................................................................................................................................................................................................................................................................................................................................................2020.50100000000010000000
................................................................................................................................................................................................................................GCATTCACAG--------TAGCTGAGTAACGG.....................................................................................................................................................................................................................................................................................................................2420.50100000000001000000
.......................................................................................................................................................................................................TGATTATATT------TCG-CGTTCGCAT.................................................................................................................................................................................................................................................................................................................................................2220.50100000000100000000
..................................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATA...........................................................................................................................................................................................................................................................................................................24200.40800000000000080000
........................................................................................................................................................................................................................................................................................TCGACTATAGC-ATTCTCTTTTGTT....................................................................................................................................................................................................................................................................24110.36400000020200000000
.......................................................................................................................................................................................................TGATTATATT------TCG-CGTTCGCATTCACAT--------...................................................................................................................................................................................................................................................................................................................................2830.33100000010000000000
...............................................................................................................................................................................................................................................................................GGAA----CTCGACTATAGC-ATTCTCTT.........................................................................................................................................................................................................................................................................2490.33300000000000030000
.......................................................................................................................................................................................................TGATTATATT------TCG-CGTTCGCATTCACAT--------A..................................................................................................................................................................................................................................................................................................................................2940.25100000001000000000
.................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGAA----CTCGACT.......................................................................................................................................................................................................................................................................................25200.25500000000500000000
.......................................................................................................................................................................................................................................................................................CTCGACTATAGC-ATTCTCTTTTGTT....................................................................................................................................................................................................................................................................2590.22200000010100000000
.........................................................................................................................................................................................................................................G--------TAGCTGAGTAACGGGTATCTGATA...........................................................................................................................................................................................................................................................................................................2550.20100000000001000000
.......................................................................................................................................................................................................................................CAG--------TAGCTGAGTAACGGGTATCTGAT............................................................................................................................................................................................................................................................................................................2650.20100000000001000000
........................................................................................................................................................................................................................................................................................TCGACTATAGC-ATTCTCTTTTGT.....................................................................................................................................................................................................................................................................23110.18200000020000000000
.................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGAA----CTCGA.........................................................................................................................................................................................................................................................................................23200.15300000000003000000
..................................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGATAGT.........................................................................................................................................................................................................................................................................................................26200.15300000000000003000
...............................................................................................................................................................................................................................................................................GGAA----CTCGACTATAGC-ATTCTCTTT........................................................................................................................................................................................................................................................................2580.13100000000000010000
..................................................................................................................................................................................................................................................................................A----CTCGACTATAGC-ATTCTCTTTTGT.....................................................................................................................................................................................................................................................................2580.13100000000010000000
................................................................................................................................................................................................................................................................................GAA----CTCGACTATAGC-ATTCTCTTTTG......................................................................................................................................................................................................................................................................2690.11100000010000000000
..............................................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGA...................................................................................................................................................................................................................................................................................................20200.10200000002000000000
.................................................................................................................................................................................................................................................................................AA----CTCGACTATAGC-ATTCTCTTTTG......................................................................................................................................................................................................................................................................25100.10100100000000000000
...................................................................................................................................................................................................................................................AGCTGAGTAACGGGTATCTGATAGT.........................................................................................................................................................................................................................................................................................................25200.10200000000000020000
..........................................................................................................................................................................................................................................................................GTCGGGGAA----CTCGACTATAGC-ATTCTC...........................................................................................................................................................................................................................................................................27200.10200200000000000000
...............................................................................................................................................................................................................................................................................GGAA----CTCGACTATAGC-ATTCTCTTA........................................................................................................................................................................................................................................................................25110.09100000000000010000
...........................................T-----TCACCAATATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................27130.08100000001000000000
.................................................TCACCAATATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................26140.07100000010000000000
..............................................................................................................................................................................................................................................................................................ATAGC-ATTCTCTTTTGTT....................................................................................................................................................................................................................................................................18180.06100000000001000000
..................................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGA.............................................................................................................................................................................................................................................................................................................22200.05100000000001000000
.............................................................................................................................................................................................................................................................CGGGTATCTGATAGT.........................................................................................................................................................................................................................................................................................................15200.05100000000001000000
...............................................................................................................................................................................................................................................................GGTATCTGATAGTCGGGG....................................................................................................................................................................................................................................................................................................18200.05100000000100000000
........................................................TATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------AAA----------------------...............................................................................................................................................................................................................................................................................................................................................................................22200.05100000000010000000
......................................................................................................................................................................................................................................................................GATAGTCGGGGAA----CTCGACT.......................................................................................................................................................................................................................................................................................20200.05101000000000000000
............................................................................................................................................................................................................................................................................CGGGGAA----CTCGACTATAGC-ATTC.............................................................................................................................................................................................................................................................................23200.05100000001000000000
........................................................TATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------AA......................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
........................................................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTCGGGG....................................................................................................................................................................................................................................................................................................25200.05100000000001000000
...............................................................................................................................................................................................................................................................GGTATCTGATAGTCGGGGAA----CTCG..........................................................................................................................................................................................................................................................................................24200.05100000010000000000
..................................................................................................................................................................................................................................................................ATCTGATAGTCGGGGAA----CTCGAC........................................................................................................................................................................................................................................................................................23200.05100000001000000000
....................................................................................................................................................................................................................................................GCTGAGTAACGGGTATCTGATA...........................................................................................................................................................................................................................................................................................................22200.05100000000001000000
.............................................................................................................................................................................................................................................................................GGGGAA----CTCGACTATAGC-ATTCTC...........................................................................................................................................................................................................................................................................24200.05100000001000000000
...............................................................................................................................................................................................................................................................................GGAA----CTCGACTATAGC-ATT..............................................................................................................................................................................................................................................................................19200.05100000000001000000
..........................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGG.....................................................................................................................................................................................................................................................................................................22200.05100000010000000000
...........................................................................................................................................................................................................................................................AACGGGTATCTGATAGTCGGGGAA----C.............................................................................................................................................................................................................................................................................................25200.05100000010000000000
................................................................GAT--ATCCCAGA------------------------------------------------------------------------------------------------AAA----------------------ATGAT..........................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
...................................................................................................................................................................................................................................................................TCTGATAGTCGGGGAA----CTCGACTAT.....................................................................................................................................................................................................................................................................................25200.05100000010000000000
droSec2
TATTAATTTT-----TTTCTCATT------T----------TAT-----TCACCAATATCTATCGAT--ATCCCAGA------------------------------------------------------------------------------------------------AAA----------------------ATGATTATATT------TCG-CGTTCGCATTTACAG--------TAGCTGAGTAACGGGTATCTGATAGTCGGGGAA----CTCGACTATAGC-ATTCTCTTTTGTTCGGT------ATAAATAT---GTTTGAATACCAT---ATTCATTGATTTGCAA----------------------------------------------------------------CTTTTTTAC----------TTCGTTTTTTG---TACAGGTAACATAA------GTGAAATAATTTCCC----TGGTGCC-------------------------------------------CGA-AATC-GAACGACGAATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGG......................................................................................................................................................................................................................................................................................................21200.0510010
..........................................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGG.....................................................................................................................................................................................................................................................................................................22200.0510010
.................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGAA----CTCGAC........................................................................................................................................................................................................................................................................................24200.0511000
.................................................................................................................................................................................................................................................................TATCTGATAGTCGGGGAA----CTCGA.........................................................................................................................................................................................................................................................................................23200.0510010
..................................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTG..............................................................................................................................................................................................................................................................................................................21200.0510001
............................................................................................................................................................................................................................................................................CGGGGAA----CTCGACTATAGC-.................................................................................................................................................................................................................................................................................19200.0511000
dm3
TTTTAAATTT-----TTTCTTATT------T----------TAT-----TCGCCAATATCTATCGAT--ATCGCAAC------------------------------------------------------------------------------------------------AAAT-----------------------GATGAAATT------TCG-TCTTCGCATTTACAC--------TAGCTTGGTAACTGGTATCTGATAATCGGGGAA----CTCGACCATAGC-ATTCTCTCTCGTTTTTT------TATT------------------------------ATTAT---------------------TTTTTCTCTTATTTATTCAAAT-------------------------ATTATTCAC----------TT-------------------------------------------------------GCTCATATGCATGAAATAGAAGTAGAAAAACA--------GGTACAAGA--------------A-ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................TCGACCATAGC-ATTCTCTCTCGTTTTTT------..........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AAATT------TCG-TCTTCGCATTTA..............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TCGCAAC------------------------------------------------------------------------------------------------AAAT-----------------------GATGAAATT------TCG-..........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGTAGAAAAACA--------GGTACAAGA--------------A-A.2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGC-ATTCTCTCTCGTTTTTT------T.........................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATAGC-ATTCTCTCTCGTTTTT.................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TT------TATT------------------------------ATTAT---------------------TTTTTCTCTT....................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................ATCTGATAATCGGGGAA----CTC...........................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TATCTGATAATCGGGGAA----CTCGA.........................................................................................................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................ATT------T----------TAT-----TCGCCAATATCTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATGAAATAGAAGTAGA.........................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TATT------------------------------ATTAT---------------------TTTTTCTCTT....................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TAAATTT-----TTTCTTATT------T----------TAT-----T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCATGAAATAGAAGTAG..........................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TCGACCATAGC-ATTCTC...........................................................................................................................................................................................................................................................................17120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTAAAGTTG-----TTTATCATT------T----------TAT-----TATTT----TATCCCGAT--ATTCCCGA------------------------------------------------------------------------------------------------AAAT-----------------------TTTGAAATT------TCT-CAATAGCACTTCCAC--------TAGCTGAGTAACGGGTATCTGATAGTCGGGGAA----CTCGACTGTAGC-ATTCTATCTTGTTTCGG------TTTAATAT---TTAAGA-TTTTGT---ATTCGAAGGTTATTAA--T--TTTTTGTCGTTG-----------------------------------------------GTCTAATTT----------G-------AGAAAATTTAGTTTACAAAA------TTAAAATAATTAGTTAAAAATTAGCC-------------------------------------------CAA-AAAC-GAAAAACGAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTTAATTTTA-----TT----ATT------T----------TCT-----TC--AAATTTCTACCGAT--ATTTGAGA------------------------------------------------------------------------------------------------AAAT-----------------------TTTATAATT------TCT-TGTTCGCACTTGCAC--------TGCCTGACTAACGGGTGTCTGATAGTCGGGGCT----CTCGACTATAGC-ATTCTTTCTAGTTTTAAAT----ATATAATTATTGTAAGAG------TAC----------------ATCAT-CGGCTTGCCG------------------------------------------------AAT-CTAGT----------TTTGTTTTCGT---TAAAATAAACGTAT------GCTGCGTAG------------CTGTC-------------------------------------------CTA-GAATCGGACGTGGA-GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ACTATCAGTT----ACTCAACATT------C----------T-------------------------------------------------------------------------TTCTTCGACAATAGGTGGCGCC----------------------------------------TTGTGGATTTCCACTAGCAAAAT------------------------GAATATTTGAAAATTGTGTAAAACAGTAACGGGTATCTTATAGTCGCGGCA----CTCGACTATAGC-GTTTCCTGTGGTTTAAT------AATT------------------------------GATTT---------------------TTTAACACCT---------------------TTAAATTTTTGAACAG--------A----------TTCTTTTTTCA---TAACAATATTATAG------ACGCCACAGTTTTC---------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
CTTAAATCTGTCAG-ACTCCAA--------------------AA-----TTTCA----TTTACTGAA--GTATCCG-------------------------------------------------TTAGGTGGCGCCCCAAAATACCG----------CT-----------------TTG------------------CTGGTTATATATCTCCATTACCTTTTGCA--CCCTT--------AAGCTGTGTAACGGGTATCTGGTAGT--GGGCA----CAAGACTATAGC-GTTCTTCCTTGTTTTTT------TTAAATTC---AAAA--GTAA------------------TG--AATGCTTTTTTTTGTAA-----------------------------------------------TTATTATTT----------T-------TTATAACTGAGATTACCAATTCATTTCAAAAGTA--ATTCT----TGGGGCT-------------------------------------------CAA-AGTC-A----------ASizeHit CountTotal NormTotal
No Reads
droTak1
TTTCAAATCG-----GACC-----------------------ATTCATT-----A--------------------------------------------------------------------------------------------------AAAAGTTATACGCAATC---AAA----------------------ATTTATATATC----TATCT-CCCTCGCACTCCCTT--------TAGCTGAGTGACGGGTATTAGATAGTCGGGACACCAACCCGACTATAGC-ATTCTCTCTTGTTTTAGAT----TTAATTTT---TTCCAAATAG---TTC----------------AATAT-TTTTTTTACAA-----------------------------------------------TTTATATAC----------CTACACTTTTT---TTAAGATAAGCTTA------TTTAAAAAAATTATT----TGATTTA-------------------------------------------CAATTATT-TAATGACAA-AASizeHit CountTotal NormTotal
No Reads
droEle1
TTCCACTTAG-----GTTCTAGTG------T----------TGT-----CTATGCAGTTCGATAGAT--GGC--------------------------------------------------------------GCC------------------------------ACCTAAAGT----------------------TTGATTGTAAC------T-T-ACTTTGAAGT-TAGT--------TGACTGAGTAACGGGTATCTAATAGTCGGAAGA----CTTGACTTTAGC-GTTCTCTCTTGTTTTTC------TTAGCTTT---GT----------------------------------------------------------------------------------A-----------CTCTTTCACAACACATTTATCCGTTTT---------AGGTAACACAC------ATGTGACAGTTT------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTCAAATCG-----GATC-----------------------ATTCGTT-----A--------------------------------------------------------------------------------------------------AAAAGTTATGCGTGATC---AAA----------------------GTTTCTATCTC----CATCT-CCCTCGCACTCCCTT--------TACCTGAGTAACGGGTATCTGATAGTCGGGGCA----CCCGACTATAGC-GTTCTCTCTTGTTTAGA-T--ATATTT-TTT---GTTTGAA-----------------------------------------------------------------------------------------CGATTTTA-----------TTCAATTT---------GGG----------------------------------------TACATGTTATAGAGTAATGCATTAAAATACTTTTTCTGATTCCATA--------------A-ATSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGTGTAT-----TT------------------------------------------------AT--GTTCCGAG------------------------------------------------------------------------------------------------GAAT------------------------------------------------------------------------------------------------------AACAACT-------------------------------------------------------------------AATAA----------------------------------------------------------------CTCTTTGAT----------T--TTCTTTTA---TACAGGTAACATAA------GTGAAATAATATCTC----TGGTGCC-------------------------------------------CGA-CATT-GAGCGACGGATGSizeHit CountTotal NormTotal
No Reads
droKik1
AACTTCTGTC----TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATTT---TTCAGGTAACATTA------GTGAAATCATTTCCT----TGGTGCC-------------------------------------------CGA-AATA-GAGCGACGCATGSizeHit CountTotal NormTotal
No Reads
droAna3
CATTTTTTTT-----GAG---AAT------A----------TATTCTTT-----A--------------------------------------------------------------------------------------------------AAAAG----------------------------------------TTAATTATAGT------T---------TCTGTGGAA--------AATATGAATACCGGTTATCATATAGTCGGAAAA----CTTGACTATAGACGTCCTATAGTATTTTTGTTTTATATATTTAT---TT----------------------------------------------------------------------------------------------------------------------------------AGG----------------------------------------TATGTTTAATAATGAGCTGCAGAAAAATA--------TTTAAAATC----------ATTTT-TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATAGACTTT-----TAAGTCTG-------------------GTTTG--TTGAGAATCCATAGCGAA--AGCTTAAA-----------------------------------------------------------------GTTTAAACTTTAAATG----------------------------------------TTAGT--------------T-AAATTGTGGGTGGAA--------GAGATAAGTACCGGGTATAATGTAGTCGGGAAA----CTCGACTATCCCCGTTATCTCTTGTCTCTT------GCAGA-------------GGG---T-----------------------------------AT-----TATGATTATTCGACAATTGTTGACTTAAAATTTTGCGTAC-ACCCT-TC----------T--TTCCTTTG---AACGCAGAATACAA------GTCA------------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
dp5
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGTACTGGGTATTTAATAGTCGGAAAA----CTCGACTACATC-TCTTTAGTTTGTTGTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG---------------TT----------------------------------------TTC---------------ATTAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTACTTTCT-----TCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGAATATCA------CAGAAATCATATCCT----TGGTGCC-------------------------------------------GGA-GATC-GAGCGCATGATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTTAGTTCG-----CTTTTTATTTGCAGCACTTTAGTTTATAT-----TTGAAATTTTTTATTGATGAATCCTATATATTTGTTTGCACTTATTGTATATAAAATTAATAGTCGTTGATTGGAAATAGTTTATAAT----------------------------------------TTGTATGTGTTATCGAAGAGAAA------------------------CAA-----------------------------------------------------------------------------------------------T---GTGTGGAAATTCG---TATCATTTATTTTCAT----------------------------------------------------------------TTTTTTCAC----------TTTGTTTTTTG----------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTCATTTTTA-----TTTTGCAGT------C----------AAA-----TC-----------------------AAATATGTTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----C---ATTGATTAATTTGCAA----------------------------------------------------------------TTGTTTTTA----------T---TTTTTTA---TG--------------------------------------------------------------------------------------------------------C--ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTATCTCCTAGTCGAGCAG---TCTCGACTAGAGC-CTTCTTACTTGTTTTAT------ATAAATAA---ATAA------------ATTTGTCTATATAAAT----------------------------------------------------------------ATTGTTTGC----------TCTTTTTATTT---TATA------------------------------------------------------------------------------------------------TTAATAT-AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................CTCGACTAGAGC-CTTCTTACTTGTT....................................................................................................................................................................................................................................................................25201.15232300000
..........................................................................................................................................................................................................................................................................GTCGAGCAG---TCTCGACTAGAGC-C................................................................................................................................................................................................................................................................................23200.102000020
droGri2
TTTATCGATA------------------------------------------------------------ACCAAAAAGTATTTTC-------------------------------------------------------------------------------------------ATATTGAACACGACA------------------------AG-TATCTGAATATTTAA--------AAACTGAGTTCAGAGTATCTGCTAGTTGAGGTA----TTTGAATAGAAC-ATTATTACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA---------------TT----------------------------------------TTG---------------TTT--ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:55 AM