ID:

dsi_27441

 Coordinate:

3l:8100128-8100277 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

GAGTCATTTGGTGAATCATCTGCGCGCACGTCGCCTGGAGTTCTTTTTGGATAAAGATCATAATATATTCAATCGTATGAGTCCACATGAAATCAGGAAATGTTTAGAAAACGCAAACACTCTGCTTAAAGAACTTCGTTTTGCTCAGACATGCGGCAGCAGTTACCATCATGTGGCCAAACTATTCAATATTCCAAATTAATAAATTTAATTATATATATAATTTTAATTCCAAATAAATTTAATTTCA
************************************************************************((.....................(((..(((((.........))))).))).......))********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
........................................................................TCGTATGAGTCCACATGAAATCAGGA........................................................................................................................................................ 26 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
..........................CACGTCGCCTGGAGTTCTTTT........................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0
.............................................................................TGAGTCCACATGAAATCAGGAAATGTT.................................................................................................................................................. 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
........................................................ATCATAATATATTCAATCG............................................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
........TGGTGAATCATCTGCGCGCACGTCGCC....................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.................................................................TATTCAATCGTATGAGTCCA..................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0
........................................................................................................TAGAAAACGCAAGCACTCTGCTTAAAGA...................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................TATTCAATCGTATGAGTCCACATGA................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........GTGAATCATCTGCGCGCACGTCGCCTGGA................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................TAGAAAACGCAAACACTCTGCTTAAAGA...................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TAAAGAACTTCGTTTTGCTCAGACA................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................TCAATCGTATGAGTCCACATGAAATCAGG......................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TTAGAAAACGCAAACACTCTG.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................AGAAAACGCAAACACTCTGCTTAAAGAAC.................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................TGCTTAAAGAACTTCGTTTTGCTCAGACAA.................................................................................................. 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................TCAATCGTATGAGTCCACATGAAATCAGGA........................................................................................................................................................ 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....CATTTGGTGAATCATCTG.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................TGCGCGCACGTCGCCTGGAGTTCTTTT........................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................ATATATTCAATCGTATGAGTC....................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................ATATATTCAATCGTATGAGTCCACA................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CGCAAACACTCTGCTTAAAGAAC.................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TCAGGAAATGTTTAGAAAACGCAAACAC.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................CTGCTTAAAGAACTTCGTTTTGC.......................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................TGAAATCAGGAAATGTTTAGAAAA........................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................TGAGTCCACATGAAATCAGGAAATGTTT................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................CATAATATATTCAATCGTATG........................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........GTGAATCATCTGCGCGCACGTCGCC....................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................ATATTCAATCGTATGAGTCCACATGAAA.............................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................TTTTTGGATAAAGATCATAATATATT..................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................CACATGAAATCAGGAAATGTTTAGAAAA........................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GTGAATCAACTGCGCG................................................................................................................................................................................................................................ 16 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................GTCCACATGAAATCAGGAAATGTT.................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................GTCCACATGAAATCAGGA........................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................CTGGAGTTCTTTTTGGATAAAG.................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............ATCATCTGCGCGCACGTCGCCTGGAG.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................GTCCAGATGAAATAAGGA........................................................................................................................................................ 18 2 8 0.38 3 0 0 0 0 0 0 0 0 0 3
......................................................................................................................ACTCTGCTTAAGGAACT................................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................AATCGGCTGAAAGAACTTCG................................................................................................................ 20 3 9 0.22 2 0 0 0 0 1 0 1 0 0 0
...............................................................................................................................................CTCAGACAAGCGGCACCA......................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
................................................................................GTCCAGATGAAATAAGG......................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................ACTCTGGTTAAGGAACT................................................................................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................CTCTGCTTAAGGAACTAGG................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTAATTCCGGATAAATTAAAT.... 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1
..........GTGAATCGACTGCGCG................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................ATATATAATTTTAATTA.................. 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTCAGTAAACCACTTAGTAGACGCGCGTGCAGCGGACCTCAAGAAAAACCTATTTCTAGTATTATATAAGTTAGCATACTCAGGTGTACTTTAGTCCTTTACAAATCTTTTGCGTTTGTGAGACGAATTTCTTGAAGCAAAACGAGTCTGTACGCCGTCGTCAATGGTAGTACACCGGTTTGATAAGTTATAAGGTTTAATTATTTAAATTAATATATATATTAAAATTAAGGTTTATTTAAATTAAAGT
**********************************************************************************************************************((.....................(((..(((((.........))))).))).......))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
..............................................................................................................................................................................CCGGTTTGATAAGTTATAAG........................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................TGCAGCGGACCTCAAGAAAAAC......................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AGCAGAACGAGTCCGTA.................................................................................................. 17 2 12 1.25 15 0 15 0 0 0 0 0 0 0 0 0 0
..........................GTGCAGCGGACCTCAAGGAA............................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................CTGTACGCCGTCGTCAATGGTA................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TAGTACACCGGCTTGATAAGTT............................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................CGTGCAGCGGACCTCAAGAAA............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................GTGTACTTTAGTCCTTTACAA.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................CCAGGTGTACTTTAGTCCTTT...................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................GTGCAGCGGACCTCAAGAAA............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................GCGTGCAGCGGACCTCAAGAA............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AAGCAGAACGAGTCCGTA.................................................................................................. 18 2 8 0.88 7 0 7 0 0 0 0 0 0 0 0 0 0
.TCAGTAAACCACCTAGTCTA..................................................................................................................................................................................................................................... 20 3 9 0.33 3 0 0 0 3 0 0 0 0 0 0 0 0
..................................GACCTCAAGAAAATCCGTTTT................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................TTGGGTTTGTGAGACTAA........................................................................................................................... 18 2 14 0.21 3 0 1 0 0 0 0 0 0 2 0 0 0
..............................................................................................................................................................................CCGGGCTGATAAGTTAGAAG........................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................TTGGGTTTGTGAGACTA............................................................................................................................ 17 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CAGGCTTGATGAGTTATAA......................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................CCATGGCAGTACACCG......................................................................... 16 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................GAAGCAGAACGAGTC...................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TCTTGAAGATAAACGGGTCT..................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................AATAGTAGTACACGGGT....................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................ATAAGTTGTAAGGTT..................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:39 AM