ID:

dsi_27425

 Coordinate:

2r:7825484-7825768 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.7 -6.3 -5.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTGCAAAGACCATTGAAAAATCAATTCGTTACCTGGTACTCAACTTTATCGAATTGCATTGGCTGCTTTATTTTCGCATTTAAAATTGCTAAACATGCTTTTTATTCGTGATTTAATTCGCTCTTTTCAGTCGTCAGTATAATAAACTGTACAGAACTTTTTTCTTAGCACTAGACATATGAATAAAAGAGTACTGGGTATCTTAAGGTCGGTAGAACCGACTTTCTTGCTCAGTCTCCCAGGTTTTTTCCTTAACCCATATCATTTTGACTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTC
*******************************************************************************************************************************************************************************************************************************...................................((....((((....)).))))********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 O001
Testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGATC............... 20 0 1 4.00 4 2 0 1 0 0 1 0 0 0 0
...........................CGAGGACCTCGAGGACACTATCA............................................................................................................................................................................................................................................................................................................................................... 23 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................GTCTTGCTCTGTCACCCAGG.................................................................................... 20 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GTCGTTGAGAAGAATC................................ 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGAT................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAGCACTAGACATATGAATAAAAGAG........................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............ATCGAGTGGGACCTCGAGGACCTGGAAG........................................................................................................................................................................................................................................................................................................................................................ 28 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......ACGGAGCATCGAGTGGGATCTC..................................................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................AGGACCTCGAGGACACTATCACT............................................................................................................................................................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................ATCTTAAGGTCGGTAGAACCGA.......................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................GCATCGTTGAGAAGAATCCAAGCA.......................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................CTGGGTATCTTGAGTTCGGAA................................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................ACCTCGAGGACACTATCAGCATCGTT....................................................................................................................................................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................AAGCAAGTTTCGGATCGACAAC......... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................CGAGGACCTCGAGGACACTATC................................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................ATCTTAAGGTCGGTAGAAC............................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................................GTCGTTGAGAAGAATCCT.............................. 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................CTCAACTTTATCGAATTG............................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CATACGCATCGTTGAGAAG.................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................ATCAGCATCGTTGAGAAGA................................... 19 2 4 0.75 3 1 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TACTGGGTCTCTTAAG........................................................................................................................ 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TACTGGGTATCTTGAG........................................................................................................................ 16 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1
..................GTGGGATCTCGAGGC................................................................................................................................................................................................................................................................................................................................................................ 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TATGTTTCGGATCGACAA.......... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTTTTCAGTCGTCAGT............................................................................................................................................................................................. 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
........................TCTGGAGGACTTCGCGGACA..................................................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TACTGGGTATCTTGA......................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................AAGGTCGGTCGAACGGCCT........................................................................................................ 19 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.....TCCGGAGGATCGAGT............................................................................................................................................................................................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0
..................GTGGGAACTCGAGGGCC.............................................................................................................................................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................................................TCGCTGAGAAGAATCCT.............................. 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GTAGAACCGACCTTGGTG.................................................................................................. 18 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................AGAAGAATCAAAGCA.......................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GAGCGAGGCCTCGTAGCTCACCCTAGAGCTCCTGGAGCTCCTGTGATAGTTATAGGAAAACGTTTCTGGTAACTTTTTAGTTAAGCAATGGACCATGAGTTGAAATAGCTTAACGTAACCGACGAAATAAAAGCGTAAATTTTAACGATTTGTACGAAAAATAAGCACTAAATTAAGCGAGAAAAGTCAGCAGTCATATTATTTGACATGTCTTGAAAAAAGAATCGTGATCTGTATACTTATTTTCTCATGACCCATAGAATTCCAGCCATCTTGGCTGAAAGAACGAGTCAGAGGGTCCAAAAAAGGAATTGGGTATAGTAAAACTGAGTATGCGTAGCAACTCTTCTTAGGTTCGTTCAAAGCCTAGCTGTTGGCGCTTGAG
**********************************************************************************************************...................................((....((((....)).))))******************************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................................................................................................AAAAAGATTGGTGATCTGT...................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................CAAAGCCCAGATGTTGG........ 17 2 5 0.20 1 0 1 0 0
..............................................................................................ATGAGTAGAAATAGC.................................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 1 0
..........................................................................................................................................................................................................................AAAGGATGGTGATCTGT...................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0
.................................................................................................................................................................................................................................................................................TTGGCTGAACGGGCGAGTC............................................................................................. 19 3 13 0.08 1 0 0 0 1
.....................................................AGGAGAATGTTTCTCGTAA......................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0
GAGCGAGGCCTCTAA.................................................................................................................................................................................................................................................................................................................................................................................. 15 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:7825434-7825818 + dsi_27425 CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--GCAAA-----------------GACCATTGA---------AAAATCAATTCGTTACCTG-GTACTCAACTTTATCGAATTGCA--T---------------------------------------------------------------------TGGC------------------------------------T--------GCTTTATTTTCGCA-------------------TTTAAAAT--TGCTAAACATGCTTTTTATTC----GTGATTTAATT-CGCTCTTTTCAGTCGTCAGTA---------TAATA-AACTGTACAGAACTT-----------------------TT---------------------------------TT------------CTTAGCACTA--G----------ACATATGAAT---------------AAA---AGAGTACTG---GGTATCTTAAGGTCGGTAGAACCGACTTTCTTGCTC---A----G---------------------------------------TCTC-CCAGGTTTTTTCCTTAACCCAT-----ATCATTTTGA-CTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTC
droSec2 scaffold_1:4676938-4677344 + CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--GCAAA-----------------GACCATTGA---------AAAATCAATTCGTTACCTG-GTACTCAACTTTATCGAATTGCA--T---------------------------------------------------------------------TGGC------------------------------------T--------ACTTTATTTTCGCATAAAGAGTTAAAGATCTCATTTAAATT--TGTTAGATATGCTTTTTATTC----GTGATTTAATT-CGCTCTTTTCAGTCGTCAGTA---------TAATA-AACTATACAAAACTT-----------------------GT---------------------------------TT------------CTTAGCACTA--G----------ACATATGAAA---------------AAG---AGAGTACTG---GGTATCTTAAGGTCGGTAGAACCGACTTTCTTGCTCATCA----G---------------------------------------TCTC-CCAGGTTTTTTCCTTAACCCAT-----ACCATTTGAA-CTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTC
dm3 chr2R:7108077-7108482 + CTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--GCAAA-----------------GACCATTGA---------AAAATCAATTCGTTACCTG-GTACTCAT--TTATCGAATTGCA--T---------------------------------------------------------------------TGTC------------------------------------T--------GTTTTATTTTCGCATAAAGAGGTTGAGATCCCATTTAAAAT--TGCTGAATATGCAATTTATTC----GTGATTTAATT-CGCTCGTTTA-----TTAGTATTATA---CTAATA-AACTGTACAGAACTT-----------------------GTT--------------------------------TT------------TTTGGCACTA--T----------A-ATTGTAAA---------------AAA---AGAGTACTT---GGTATCTTAAGGTCGGTAGAACCGACTTTCTAGCTCATCA----G---------------------------------------TCTC-CTCGGTTTTCTCCTTAACCCAT-----ACCATTTTGA-CTCACACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTC
droEre2 scaffold_4845:18686948-18687283 - CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT-------------------------------GA---------AAAATCAATTCGTTACCTG-CTACTCAACGGCATCCAATTGCG--A---------------------------------------------------------------------TTGC------------------------T---------ATCGAGGTTTTGGTT---------------------GGATTCAATTTGC---------------------TATTC----AAGATTCAATTTTACTCTTTTCAGTATTCA--------------------------------------------------------------------------------------------------------------------A-------ATATT-AAAACCTC---------------TAT---AATATACATATATGTACCTTTAGGTCGGTAGAATCGACTGTCTTGGTCTTCA----G---------------------------------------TTTA-CCTGGTTTTCTTCTTAACCCAT-----ACCATTTTGA-CTCACACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTC
droYak3 2R:2035416-2035797 - CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTT-GCAAC-----------------GTCTATTGA---------AAAATCAATTCGTTACCTG-GTACTCAACGGCATTCAATTGCG--A---------------------------------------------------------------------TTGC------------------------T---------TTCGAGACTTTGGTTTATTTCCCCCCAAAGAATAAGAGATTCCATTTGAAAC--TTCTAAATGTGCTTTTTA-------AAGATTAAATTTTACTCTTTTCAGTAGTCA--------------------------------------------------------------------------------------------------------------------A-------ATATA-AAAATATA---------------TAT---ATAGTACAT----ATATCTTTAGGTCGGTTGAACCGACTGTCTTGGTCACCA----G---------------------------------------TGTC-CCAGGTTTTCTCCTTAACACAC-----ACCATTTCGA-CTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTC
droEug1 scf7180000409462:1396633-1397022 - CTCGCTGCGAAGCATTGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTT-TCAA-AGC-A------------ATCCATTGG---------AAAATCAATTCGTTACCCA-GTACTCAAAGGG-TTTAAA-GGGTGATGAATC------------------------------------------------------AGTTTTCAATGTC------------------------------------C--------GTTTT------------------TGGGGTCTTCTTTAAA--------TTAT--------------------------------------------------------------------ATTGTTATACCTATGTACTTTGATAAGTTTTTTAAA-G--------------------------------TTTCTCTGTTAAACTTTAACTTTTAGACGAAGTTTTTG-C-TATTAC---------------ACA---CGAGTACTG---GGTATCTTTAAGTCGGACCAATCGACTATATAAACTT-----------------------------------------------AAA-CCAAGGTTTTCTCCTTAACCCTA-----AACATTCCGA-CTAACACGCATCGTTGAGAAGAACCCTAGCAAGTTTCGAATCGACAACCGTGAACTC
droBia1 scf7180000301754:1186669-1187104 - CTCGCTGCGGAGCATCGAATGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTTGCCAA-AGC-A------------ATCCATTGA---------AAAATCAATTCCTAACCCG-GTACTCAAAGCG-TTT----------------------------GGGGGGG---TGAA--GTGAGTTGGGAAGAAAATATGATTATACTTGTCAATGTCGGCTTCTTATGTCATTATAGTAGTC---------CTCAA--------------------------------------------GAA--TTCCCAACAACCTTTAAAAAA----GTATCTTATT----------TA-----TTTATATTGTAACTTTATTT-TACTTTACTTTACTT-----------------------TA---------------------------------TT------------TTATATATCT--T----------ATATTCCAAG------------------TGATGAGTACTG---GGTGTCTTAAAGTCGGACAAATCGACTTTATTTATCAAAA----C---------------------------------------TTTTCGAAGGTCTCTTCCTTAACCCCT-----TCTATTTCGA-CCTATACGCATTGTTGAGAAGAATCCGAGCAAATTTCGAATCGACAACCGTGAACTC
droTak1 scf7180000415313:150765-150907 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATACTG---GGTATGTTCAAGTCGGTCTAATCGACTATATATATCTACA----A---------------------------------------TTTCCCAAGGTTCTTTCCTTAACTCTA-----ACCCTTTTGA-CTAATACGCATTGTTGAGAAGAATCCGAGCAAGTTTAGGATCGACAACCGTGAACTC
droEle1 scf7180000491214:2545058-2545367 + A-------------------------------------------------------------------------------------------------------GATTGATTTTTTATCT-----TTCAGTTTTATTA---------------------------------------------------------------------------------TT------------------------T---------ACTGATAC---ATTTTATTTTTACATA-------------------TAATAT--TAATATAT--------------------------------------------------------------------ATTGCTATATTT-TGTGTTTTGAAAAGTTTTATATT-T--------------------------------TT------------TTTAGCATTTAG-------TTTTG-ATTATATA---------------AAG---TGAGTACTG---GGTATGTAAAAGTCGGACCAATCGGCTATATTTATC---T----GTTACTCCTTACAAAGAAAAAGGTTCCTC-------AATTTAT-CCAAGGTCTCCTCCTTAACCCTA-----ACAATTTTGATCCTTTACGCATCGTTGAGAAGAATCCGAGCAAGTTTCGGATCGACAACCGTGAACTC
droRho1 scf7180000766880:57958-58063 - CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTTGGCAA-AGC-A------------ATCCATTGG---------AAAATCAATTCCTCACCCG-GTACTCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453773:49667-49814 + TTTATTCT-------------------------------------------TATCTTTTT--G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------ACA-----CA------------------TGATGAGTACCG---GGTATC-----------AG-ATCTGCTTTAT-----------------------------------------------------TCACTTAAGG-TTTCTCCTTAACCCTA-----ACTTTTTCGA-TCCTTACGCATTGTTGAGAAGAACCCGAGCAAGTTTCGGATCGACAACCGCGAACTC
droKik1 scf7180000302355:260135-260553 + TTCGCTGCGGAGCATCGAGTGGGATCTCGAGGACCTTGAGGACACTATCAATATCCTTTTTGACAA-AACAA------------AACCATTGA---------AAAATCAATTCCTTACCTGGGTACCCAATGGA-TTGAAT-GCAGGATATATTACTGAAGCTTTTTGGGGTTTTTTAAA--GCTAGTTTTTAATAGAAATTGAGTACATTTAG------------------------------TACAAAAAAGTTGAAGGATTATAGTTTATTTGACCATAAAA---------------------------------TACTTTCGATA-AGAT----------------------------AGGGA---------TAATATAACTAG---------------------------------------------------------------------------------------ATTA--G----------AAATATGAAACGCTTCCTTTATGCAATGCATTGAGTACCT---GGT--------------AGAAT---------TTCTCAACAG---C---------------------------------------TTTCCTTTGGT--TTTCCTTAACTTAAACCCTT---TTCCTA-ACCTTACGCATCGTCGAGAAGAATCCAAGCAAATTTCGGATCGACAATCGTGAACTC
droAna3 scaffold_13266:820720-821035 + CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--ACAAG--C-AATCGTCACCGCTGTCTATTGA---------AAAATCAATTCATTGCCCG-CTACTCAAAGAG-T------------------------------GGTAGGG---TAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTTTAG------T---TTAGTTTTGAAATCATATATATA-TATTGATTTCTTCTTTAATTACCACTTGAATAATT------------T--------------------------------------------------------------------------------CTAGAGATTACTTTACTTC----------------------------------------------CCATTAT-CAATGGTTTCCTCCTTAACCCTT----AACCTTTTCGA-TTAATACGCATCGTTGAGAAGAATCCGAGCAAATTTTGGATCGATAACCGTGAGCTT
droBip1 scf7180000396730:1825596-1825960 + CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--ACAAG--C-AATCATCACCGTCGTCTATTGA---------AAAATCAATTCATTGCCCG-GTACTCAAAGTA-GT-----------------------------GGTAGGG---AAAATAGTGTTTCAGGAA---AATATA----------------------------------------------------TTCAG--------------------------------------------GAAAAGATTTAAAAACCTTTAGAAAA----ATATCTT---------------------------------------------------------------TTAAAA----TCGTATT-T--------------------------------CT------------TTAAATTCTTAC-------TCTAG-------AA------------------TGTTGAGTACCG---GTTATC---------------------------------A----GTTATTAATTAAT-------------ATTAATCTAGCCATTAT-CAAAGGTTTCCTCCTTAACCCTT----AACTCTTTCGA-TTAATACGCATCGTTGAAAAGAATCCGAGCAAATTTCGGATCGATAACCGTGAACTT
dp5 3:18660975-18661055 - TTTTTCTT-------------------------------------------------------------------------------------AACCTTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----A-----CCGA-CTAACACGCATTGTCGAGAAGAATCCGACCAAGTTTCGGATCGACAACCGCGAACTC
droPer2 scaffold_34:607754-607834 - TTTTTCTT-------------------------------------------------------------------------------------AACCCTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----A-----CCGA-CTAGCACGCATTGTCGAGAAGAATCCGACCAAGTTTCGCATCGACAACCGCGAACTC
droWil2 scf2_1100000004510:3494365-3494429 + TTCCCTGAGAAGCATTGAATGGGATCTAGAGGATTTGGAAGATACTATCAATATCCTTTT--ACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12823:1235146-1235229 - TTCGCTGCGCAGCATTGAATGGGACTTAGAGGATCTGGAGGACGCCATCAATATCCTTTT--GCAAAACT-A-------------------------------AACACAATTCGATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:674120-674211 + TTCGCTGCGCAGTATTGAATGGGACCTCGAGGATCTGGAGGACACTATCAATATCCTTTT--GCCAAAAC-A------------AATCAAAGA---------ATATTCCACTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:5990623-5990740 + ------------------------------------------------------------------------------------------------------AAAATCAATTTGATTTCT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CTTT-----------------------------------CC----A-CT-ACAGTTTTTCCTTAACTTGTTTTTATCTGTTTAG----AGCACGCATTGTTGAAAAGAATCCAACCAAGTTTCGCATTGATAATCGTGAACTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--GCAAA-----------------GACCATTGA---------AAAATCAATTCGTTACCTG-GTACTCAACTTTATCGAATTGCA--T---------------------------------------------------------------------TGGC------------------------------------T--------GCTTTATTTTCGCA-------------------TTTAAAAT--TGCTAAACATGCTTTTTATTC----GTGATTTAATT-CGCTCTTTTCAGTCGTCAGTA---------TAATA-AACTGTACAGAACTT-----------------------TT---------------------------------TT------------CTTAGCACTA--G----------ACATATGAAT---------------AAA---AGAGTACTG---GGTATCTTAAGGTCGGTAGAACCGACTTTCTTGCTC---A----G---------------------------------------TCTC-CCAGGTTTTTTCCTTAACCCAT-----ATCATTTTGA-CTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGATC...............2014.00401210000000000000
...........................CGAGGACCTCGAGGACACTATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00301200000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGAT................1911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCACTA--G----------ACATATGAAT---------------AAA---AGAG................................................................................................................................................................................................2611.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAAGGTCGGTAGAACCGA...............................................................................................................................................................2211.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTTGAGAAGAATCCAAGCA..........................2411.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAGTTTCGGATCGACAAC.........2211.00100000001000000000
...........................CGAGGACCTCGAGGACACTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAAGGTCGGTAGAAC..................................................................................................................................................................1911.00100001000000000000
.............................................................................................................................CTCAACTTTATCGAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACGCATCGTTGAGAAG....................................1911.00101000000000000000
..................GTGGGATCTCGAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.33100000000100000000
droSec2
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--GCAAA-----------------GACCATTGA---------AAAATCAATTCGTTACCTG-GTACTCAACTTTATCGAATTGCA--T---------------------------------------------------------------------TGGC------------------------------------T--------ACTTTATTTTCGCATAAAGAGTTAAAGATCTCATTTAAATT--TGTTAGATATGCTTTTTATTC----GTGATTTAATT-CGCTCTTTTCAGTCGTCAGTA---------TAATA-AACTATACAAAACTT-----------------------GT---------------------------------TT------------CTTAGCACTA--G----------ACATATGAAA---------------AAG---AGAGTACTG---GGTATCTTAAGGTCGGTAGAACCGACTTTCTTGCTCATCA----G---------------------------------------TCTC-CCAGGTTTTTTCCTTAACCCAT-----ACCATTTGAA-CTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............ATCGAGTGGGATCTCGAGGACCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGATCGAC............2311.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAGTTTCGGATCGACAAC.........2211.0010010
...GCTCCGGAGCATCGAGTGGGATCTCGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
...........................CGAGGACCTCGAGGACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
dm3
CTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--GCAAA-----------------GACCATTGA---------AAAATCAATTCGTTACCTG-GTACTCAT--TTATCGAATTGCA--T---------------------------------------------------------------------TGTC------------------------------------T--------GTTTTATTTTCGCATAAAGAGGTTGAGATCCCATTTAAAAT--TGCTGAATATGCAATTTATTC----GTGATTTAATT-CGCTCGTTTA-----TTAGTATTATA---CTAATA-AACTGTACAGAACTT-----------------------GTT--------------------------------TT------------TTTGGCACTA--T----------A-ATTGTAAA---------------AAA---AGAGTACTT---GGTATCTTAAGGTCGGTAGAACCGACTTTCTAGCTCATCA----G---------------------------------------TCTC-CTCGGTTTTCTCCTTAACCCAT-----ACCATTTTGA-CTCACACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............CGAGTGGGATCTCGAGGACCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAGTGGGATCTCGAGGACCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTGAGAAGAATCCAAGC...........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGCATCGAGTGGGATCTCGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCTACGGAGCATCGAGTGGGATCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTACGGAGCATCGAGTGGGATCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................GTGGGATCTCGAGGACCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TACGGAGCATCGAGTGGGATCTCGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GGGATCTCGAGGACCTCGAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GAGCATCGAGTGGGATCTCGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAAGGTCGGTAGAA...................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AGAGTACTT---GGTATCTT................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAGTTTCGGATCGACA...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GTGGGATCTCGAGGACCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....TACGGAGCATCGAGTGGGATCTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................ACCTCGAGGACACTATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
....................GGGATCTCGAGGACCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATCGAGTGGGATCTCGAGGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAGGACCTCGAGGACACTATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAGTTTCGGATCGACAAC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGTGGGATCTCGAGGACCTCGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TACGGAGCATCGAGTGGGATCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTTCGGATCGACAACCGCGAA...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAAGGTCGGTAGAACCGA...............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGATCGACAACCGCGAACT.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGGATCGACAACC........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TACGGAGCATCGAGTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGCAATTTATTC----GTGATT...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGCTACGGAGCATCGAGTGGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATCCAAGCAAGTTTC....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGCAAGTTTCGGATC...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................CGAGGACCTCGAGGACACTATCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGAATCCAAGCAAGTTTCGGA.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTT---GGTATCTTAAGGT...........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAATCCAAGCAAGTTTCGGAT................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....TACGGAGCATCGAGTGGGATCTCGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGAATCCAAGCAAGTTTCGGAT................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAGAAGAATCCAAGCAAGTTTCGG..................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAGAAGAATCCAAGCAAGTTTC....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................TCTCGAGGACCTCGAGGACACTATCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT-------------------------------GA---------AAAATCAATTCGTTACCTG-CTACTCAACGGCATCCAATTGCG--A---------------------------------------------------------------------TTGC------------------------T---------ATCGAGGTTTTGGTT---------------------GGATTCAATTTGC---------------------TATTC----AAGATTCAATTTTACTCTTTTCAGTATTCA--------------------------------------------------------------------------------------------------------------------A-------ATATT-AAAACCTC---------------TAT---AATATACATATATGTACCTTTAGGTCGGTAGAATCGACTGTCTTGGTCTTCA----G---------------------------------------TTTA-CCTGGTTTTCTTCTTAACCCAT-----ACCATTTTGA-CTCACACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................CGAGGACCTCGAGGACACTATCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGATC...............2011.0011000000
............................GAGGACCTCGAGGACACTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
....................GGGATCTCGAGGACCTCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAAGCAAGTTTCGGATC...............2111.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----ACCATTTTGA-CTCACACGCATCGT...........................................2511.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGATCG..............2111.0011000000
droYak3
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTT-GCAAC-----------------GTCTATTGA---------AAAATCAATTCGTTACCTG-GTACTCAACGGCATTCAATTGCG--A---------------------------------------------------------------------TTGC------------------------T---------TTCGAGACTTTGGTTTATTTCCCCCCAAAGAATAAGAGATTCCATTTGAAAC--TTCTAAATGTGCTTTTTA-------AAGATTAAATTTTACTCTTTTCAGTAGTCA--------------------------------------------------------------------------------------------------------------------A-------ATATA-AAAATATA---------------TAT---ATAGTACAT----ATATCTTTAGGTCGGTTGAACCGACTGTCTTGGTCACCA----G---------------------------------------TGTC-CCAGGTTTTCTCCTTAACACAC-----ACCATTTCGA-CTCATACGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGTTTCGGATC...............2011.00101000000000
........................................................TTTTT-GCAAC-----------------GTCTATTGA---------AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................GTGGGATCTCGAGGACCTCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................CGAGGACCTCGAGGACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................AATTGCG--A---------------------------------------------------------------------TTGC------------------------T---------TTCGAGACTTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...............CGAGTGGGATCTCGAGGACCTCGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CCAGGTTTTCTCCTTAACACAC-----AC..................................................................2511.00101000000000
...........GCATCGAGTGGGATCTCGAGGACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
CTCGCTGCGAAGCATTGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTT-TCAA-AGC-A------------ATCCATTGG---------AAAATCAATTCGTTACCCA-GTACTCAAAGGG-TTTAAA-GGGTGATGAATC------------------------------------------------------AGTTTTCAATGTC------------------------------------C--------GTTTT------------------TGGGGTCTTCTTTAAA--------TTAT--------------------------------------------------------------------ATTGTTATACCTATGTACTTTGATAAGTTTTTTAAA-G--------------------------------TTTCTCTGTTAAACTTTAACTTTTAGACGAAGTTTTTG-C-TATTAC---------------ACA---CGAGTACTG---GGTATCTTTAAGTCGGACCAATCGACTATATAAACTT-----------------------------------------------AAA-CCAAGGTTTTCTCCTTAACCCTA-----AACATTCCGA-CTAACACGCATCGTTGAGAAGAACCCTAGCAAGTTTCGAATCGACAACCGTGAACTCSizeHit CountTotal NormTotal
No Reads
droBia1
CTCGCTGCGGAGCATCGAATGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTTGCCAA-AGC-A------------ATCCATTGA---------AAAATCAATTCCTAACCCG-GTACTCAAAGCG-TTT----------------------------GGGGGGG---TGAA--GTGAGTTGGGAAGAAAATATGATTATACTTGTCAATGTCGGCTTCTTATGTCATTATAGTAGTC---------CTCAA--------------------------------------------GAA--TTCCCAACAACCTTTAAAAAA----GTATCTTATT----------TA-----TTTATATTGTAACTTTATTT-TACTTTACTTTACTT-----------------------TA---------------------------------TT------------TTATATATCT--T----------ATATTCCAAG------------------TGATGAGTACTG---GGTGTCTTAAAGTCGGACAAATCGACTTTATTTATCAAAA----C---------------------------------------TTTTCGAAGGTCTCTTCCTTAACCCCT-----TCTATTTCGA-CCTATACGCATTGTTGAGAAGAATCCGAGCAAATTTCGAATCGACAACCGTGAACTCSizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATACTG---GGTATGTTCAAGTCGGTCTAATCGACTATATATATCTACA----A---------------------------------------TTTCCCAAGGTTCTTTCCTTAACTCTA-----ACCCTTTTGA-CTAATACGCATTGTTGAGAAGAATCCGAGCAAGTTTAGGATCGACAACCGTGAACTCSizeHit CountTotal NormTotal
No Reads
droEle1
A-------------------------------------------------------------------------------------------------------GATTGATTTTTTATCT-----TTCAGTTTTATTA---------------------------------------------------------------------------------TT------------------------T---------ACTGATAC---ATTTTATTTTTACATA-------------------TAATAT--TAATATAT--------------------------------------------------------------------ATTGCTATATTT-TGTGTTTTGAAAAGTTTTATATT-T--------------------------------TT------------TTTAGCATTTAG-------TTTTG-ATTATATA---------------AAG---TGAGTACTG---GGTATGTAAAAGTCGGACCAATCGGCTATATTTATC---T----GTTACTCCTTACAAAGAAAAAGGTTCCTC-------AATTTAT-CCAAGGTCTCCTCCTTAACCCTA-----ACAATTTTGATCCTTTACGCATCGTTGAGAAGAATCCGAGCAAGTTTCGGATCGACAACCGTGAACTCSizeHit CountTotal NormTotal
No Reads
droRho1
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTTTGGCAA-AGC-A------------ATCCATTGG---------AAAATCAATTCCTCACCCG-GTACTCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTATTCT-------------------------------------------TATCTTTTT--G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------ACA-----CA------------------TGATGAGTACCG---GGTATC-----------AG-ATCTGCTTTAT-----------------------------------------------------TCACTTAAGG-TTTCTCCTTAACCCTA-----ACTTTTTCGA-TCCTTACGCATTGTTGAGAAGAACCCGAGCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotal
No Reads
droKik1
TTCGCTGCGGAGCATCGAGTGGGATCTCGAGGACCTTGAGGACACTATCAATATCCTTTTTGACAA-AACAA------------AACCATTGA---------AAAATCAATTCCTTACCTGGGTACCCAATGGA-TTGAAT-GCAGGATATATTACTGAAGCTTTTTGGGGTTTTTTAAA--GCTAGTTTTTAATAGAAATTGAGTACATTTAG------------------------------TACAAAAAAGTTGAAGGATTATAGTTTATTTGACCATAAAA---------------------------------TACTTTCGATA-AGAT----------------------------AGGGA---------TAATATAACTAG---------------------------------------------------------------------------------------ATTA--G----------AAATATGAAACGCTTCCTTTATGCAATGCATTGAGTACCT---GGT--------------AGAAT---------TTCTCAACAG---C---------------------------------------TTTCCTTTGGT--TTTCCTTAACTTAAACCCTT---TTCCTA-ACCTTACGCATCGTCGAGAAGAATCCAAGCAAATTTCGGATCGACAATCGTGAACTCSizeHit CountTotal NormTotal
No Reads
droAna3
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--ACAAG--C-AATCGTCACCGCTGTCTATTGA---------AAAATCAATTCATTGCCCG-CTACTCAAAGAG-T------------------------------GGTAGGG---TAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTTTAG------T---TTAGTTTTGAAATCATATATATA-TATTGATTTCTTCTTTAATTACCACTTGAATAATT------------T--------------------------------------------------------------------------------CTAGAGATTACTTTACTTC----------------------------------------------CCATTAT-CAATGGTTTCCTCCTTAACCCTT----AACCTTTTCGA-TTAATACGCATCGTTGAGAAGAATCCGAGCAAATTTTGGATCGATAACCGTGAGCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAATCCGAGCAAATTTTGGAT................2612.002000002
...GCTCCGGAGCATCGAGTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTTGAGAAGAATCC...............................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCGAGCAAATTTTGGA.................2011.001001000
droBip1
CTCGCTCCGGAGCATCGAGTGGGATCTCGAGGACCTCGAGGACACTATCAATATCCTTTT--ACAAG--C-AATCATCACCGTCGTCTATTGA---------AAAATCAATTCATTGCCCG-GTACTCAAAGTA-GT-----------------------------GGTAGGG---AAAATAGTGTTTCAGGAA---AATATA----------------------------------------------------TTCAG--------------------------------------------GAAAAGATTTAAAAACCTTTAGAAAA----ATATCTT---------------------------------------------------------------TTAAAA----TCGTATT-T--------------------------------CT------------TTAAATTCTTAC-------TCTAG-------AA------------------TGTTGAGTACCG---GTTATC---------------------------------A----GTTATTAATTAAT-------------ATTAATCTAGCCATTAT-CAAAGGTTTCCTCCTTAACCCTT----AACTCTTTCGA-TTAATACGCATCGTTGAAAAGAATCCGAGCAAATTTCGGATCGATAACCGTGAACTTSizeHit CountTotal NormTotal
No Reads
dp5
TTTTTCTT-------------------------------------------------------------------------------------AACCTTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----A-----CCGA-CTAACACGCATTGTCGAGAAGAATCCGACCAAGTTTCGGATCGACAACCGCGAACTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTTCGGATCGACAACCGCGAA...2511.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACCAAGTTTCGGATCGAC............2111.0010100000000
droPer2
TTTTTCTT-------------------------------------------------------------------------------------AACCCTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----A-----CCGA-CTAGCACGCATTGTCGAGAAGAATCCGACCAAGTTTCGCATCGACAACCGCGAACTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGTTTCGCATCGAC............1913.003300000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTCGAGAAGAATCC...............................1811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCACGCATTGTCGAGAA.....................................2011.001010000
droWil2
TTCCCTGAGAAGCATTGAATGGGATCTAGAGGATTTGGAAGATACTATCAATATCCTTTT--ACAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......GAGAAGCATTGAATGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.............ATTGAATGGGATCTAGAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.............ATTGAATGGGATCTAGAGGATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
......................GATCTAGAGGATTTGGAAGATACTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
droVir3
TTCGCTGCGCAGCATTGAATGGGACTTAGAGGATCTGGAGGACGCCATCAATATCCTTTT--GCAAAACT-A-------------------------------AACACAATTCGATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................AGAGGATCTGGAGGACGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
...........GCATTGAATGGGACTTAGAGGATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..............TTGAATGGGACTTAGAGGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
..........................TAGAGGATCTGGAGGACGCCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.......................ACTTAGAGGATCTGGAGGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
..............TTGAATGGGACTTAGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000100000
...............TGAATGGGACTTAGAGGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
..........................TAGAGGATCTGGAGGACGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............CATTGAATGGGACTTAGAGGATCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
.............ATTGAATGGGACTTAGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.............ATTGAATGGGACTTAGAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TTCGCTGCGCAGTATTGAATGGGACCTCGAGGATCTGGAGGACACTATCAATATCCTTTT--GCCAAAAC-A------------AATCAAAGA---------ATATTCCACTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............TGAATGGGACCTCGAGGATCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................GGGACCTCGAGGATCTGGAGGACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................GGGACCTCGAGGATCTGGAGGACACTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
------------------------------------------------------------------------------------------------------AAAATCAATTTGATTTCT---T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CTTT-----------------------------------CC----A-CT-ACAGTTTTTCCTTAACTTGTTTTTATCTGTTTAG----AGCACGCATTGTTGAAAAGAATCCAACCAAGTTTCGCATTGATAATCGTGAACTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:38 PM