ID:

dsi_27409

 Coordinate:

2r:4381133-4381282 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.2 -0.7 -0.5

Flybase annnotation

CDS [2r_4381323_4382624_-]; CDS [2r_4380891_4381132_-]; exon [2r_4380404_4381132_-]; three_prime_UTR [2r_4381220_4381322_-]; exon [2r_4381220_4382735_-]; intron [2r_4381133_4383261_-]

No Repeatable elements found

Sense Strand Reads

#################################################################################################################---------------------------------------------------------------------------------------##################################################
CTACAACTAAGTTACATTTATTGGCACTATTCTATATCCTCTGTAAACTGTAACACAATCTGCAGCTGGCAATTTATAAAATAAAGCGAAATCTATACCTCCACCAACTGAAAGCTGAGGTGTTTTAAATATTTTATAAATCTTGTTTGCAATGTGTTTTAATTGTGTAATAAATCATGATTTCTTAACTTTGTCTACAGCCAATATGGAGCAACCATACGAGGAAAGTGCCGCTCTGCTTAACCACATG
***************************************************.........(((.....)))......................................********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
......................................................................................CGAAATCTATACCTCCACCAACT............................................................................................................................................. 23 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
.........................ACTATTCTATATCCTCTGTAAACT......................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................GTAACACAATCTGCAGCT....................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................AACACAATCTGCAGCTGGC.................................................................................................................................................................................... 19 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
..................TATTGGCACTACTCTGTATCCTCTGC.............................................................................................................................................................................................................. 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................GTAACACAATCTGCAGCTG...................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................ATACCTCTACCAACTGAAAGCTGAG................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TAACACAATCTGCAGCTG...................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................GTAAACTGTAACACAATCTGCAGCTGGC.................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................CTATTCTATATCCTCTGTA............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................CTGTAAACTGTAACACAATCT............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................TGCAAACTGTAACACATTCTGCAG......................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................TTGGCACTATTCTGTATCCTCTGCA............................................................................................................................................................................................................. 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................AATCTGCAGCTGGCAATTT............................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.........................................TGTAAACTGTAACACAATCTGCA.......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................GCACTATTCTATATCCTCTGTAAACTG........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GTTACATTTATTGGCACT.............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................CCACCAACTGAAAGCCGAGGT................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............TACATTTATTGGCACTACTCTGTA...................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................TATTGGCACTATTCTATATCCTCTGTAA............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACGAGGAAAGTGCCGCTCTGCTTA........ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................TCTATATCCTCTGTAAACT......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................GTTTTAATTGTTTAATAAA............................................................................ 19 1 8 0.63 5 0 3 0 1 0 0 0 0 0 1
...........................................................................................................................................................GTTTTAATTGTTTAATA.............................................................................. 17 1 20 0.40 8 0 0 0 2 1 0 1 0 0 4
..............................................................................................................................................TTGTTTGCAAGGTGTTTAACT....................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
...........................TATTCTGTATCCTCTGCA............................................................................................................................................................................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TAACTTTGTCGACAGACATT............................................. 20 3 20 0.15 3 0 0 0 0 0 0 0 0 0 3
...........................................................................................................................................................GTTTTAATTGTTTAATAA............................................................................. 18 1 17 0.12 2 0 1 0 0 0 0 1 0 0 0
........................................................ATTCTGCAGCTGGCAA.................................................................................................................................................................................. 16 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................ATATGGAACGACCATA............................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................GTGTAATAAGTCAAGA...................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
............................ATTCTGTATCCTCTGCA............................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GATGTTGATTCAATGTAAATAACCGTGATAAGATATAGGAGACATTTGACATTGTGTTAGACGTCGACCGTTAAATATTTTATTTCGCTTTAGATATGGAGGTGGTTGACTTTCGACTCCACAAAATTTATAAAATATTTAGAACAAACGTTACACAAAATTAACACATTATTTAGTACTAAAGAATTGAAACAGATGTCGGTTATACCTCGTTGGTATGCTCCTTTCACGGCGAGACGAATTGGTGTAC
*********************************************************************************************************************************************.........(((.....)))......................................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.................................................................................ATTTCGCTTTAGATATGGAGG.................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0
............................................................................................................................................................................................GAAACAGATGTCGGTTATAC.......................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................CTCGTTGGTATGCTCCTTTCAC.................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGTTGGTGTGCTCCTTTCAC.................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGTCGCGGCTAGACGAATTGGT.... 22 3 1 1.00 1 0 0 0 1 0 0 0 0
...................................TAGGAGACGTTTGACATTGT................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................TGGTTGACTTTCGACTCCACAAAATTTA........................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................AGATGTCGGTTAGACTTTGT..................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0
..................................................................................................................................................AAGGTTACACAACGTTAACAC................................................................................... 21 3 11 0.09 1 0 0 0 1 0 0 0 0
..........................................................................................TCGAGATGGAGGTGGTT............................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
...............................................................TCGACTGTTAAATATT........................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4381083-4381332 - dsi_27409 CTACAACTAAGTT-AC-ATTTATT-GG-CACTATTCT----A----TATCCTCTGT-----AAACTGTAACA-----------------CAATCTGCAGCTGGCA-ATTTA----TAAAATAAAGCG--AAATCTATACCTCCACCAACT-G-----AAAGCT--G----------------------------------------------AGGTGTTTTAAATATTTTATA--------AA--------------TC-------------------------------------------TTGTTTGCAATGTGTTTT-----AATTGTGTAATAAATCA------------TGA--TTT------CTTAA---CTTT----GTC--------TACAGCCAATATGGAGCAACCAT---ACGAGGAAAGTGCCGCTCTGCTTAACCACATG---
droSec2 scaffold_1:1196782-1197031 - CTACAACTAAGTT-AC-ATTTATG-GG-CACTATTCT----G----TATCCTCTGC-----AAACTGTAACA-----------------CATTCTGCAGCTGGCA-ATTTA----TGAAATAAAGCG--AAATCTATACCTCCACCAACT-G-----AAAGCT--G----------------------------------------------AGGTGTTTTAAATATTTTATA--------AA--------------TC-------------------------------------------TTTTTAGCAATGTCTTTT-----AATTGTGTAATAAATCT------------TGA--CTT------CTTAA---CTTT----GTC--------TACAGCCAATATGGAGCAACCCT---ACGAGGAAAGTGCCGCTCTGCTTAACCACATG---
dm3 chr2R:3539809-3540050 - CTACAACTAAGTT-AC-ATTTATT-GG-CACTATTCT----G----TATCCTCTGC-----AAACTGTAACA---------------------CTGCAGCTGGCA-ATTTA----TTAAATAAAGCG--AAATCTATACCTCCACCAACT-G-----AAAACT--G----------------------------------------------AGGTGTTTTATATATTTTATA--------AA--------------TC-------------------------------------------TTGTTTGCAATGTCTTTT-----AATTGCGTAA----TCA------------TGA--TCT------CTTAA---CTTT----GTC--------TACAGCCAATATGGAGCAACCCT---ACGAGGAAAATGCCGCTCTGCTTAACCACATG---
droEre2 scaffold_4929:19064772-19065021 + CTACAACTAAGTT-AC-ATTTATT-AG-CACTATTTT----G----TATCCTCTGC-----AAACTGTAACA-----------------CATTCTGCAGCTGGCA-ATTTA----TAAAATAAAGCG--AAATCTATACCTCCACGAACT-G-----AAAGCT--G----------------------------------------------AGGTTTATTATATATTTTAAA--------AC--------------TA-------------------------------------------TTCTAAGCAATGTCTTTT-----AATTCTGTAATAAATCA------------TGA--TCT------CTTAA---CTTT----GTC--------TGCAGCCAACATGGAGCAACCCT---ACGAGGAAAGTGCAGCTCTACTTAACCACATG---
droYak3 2L:16211456-16211705 - dya_333 CTACAACTAAGTTAA--ATTTATT-GG-CACTATTTT----G----TATCCTCTGC-----AAACTGTAACA-----------------CATTATGCAGCTGGCA-TTTTA----TGAAATAAAGCG--AAAACTATACCTCCACGTACT-A-----AGAGCT--G----------------------------------------------AGGTTTAATATATATTTTATA--------AA--------------AA-------------------------------------------TTGTTGGCATTGTCTTAT-----AATTGTGTAATAAGTCA------------TGA--TCT------CTTAA---ATTT----GTC--------TACAGCCAATATGGAGCAACCCT---ACGAGGAAAGTGCCACTCTGCTTAACCACATG---
droEug1 scf7180000409672:5556511-5556779 - CTACAATTAAGATTAT-TTTTATT-GG-CACCATTCT----G----TATCCTCTGCGAGAAAATTTGTAATA-----------------CATCCTGCAGATGGCA-ATTCA----TGAAATAAAACA--AAACCTATACCTCCATTACTT-G-----AAATCAATG----------------------------------------------AGGGGTATTTTTTATATCACT--------AC--------------TA-------------------------------------------TTTTTCAAAACGATTCTT-----AATTTCTTAA----GTATGTTTTAACTTTAAA--AAT------CTTAA---CTTT----GTT--------CGCAGCCAATATGGAGCAACCCT---TCGAGGAAAACGCTGCTCTGCTTAACCACATGATG
droBia1 scf7180000302292:2593201-2593465 + CTACAATTAAGACTAT-TTTTATT-GG-CTCCATTCT----G----TATCCCCTGCAAGAGAAACTGTAATA-----------------CATCCTGCAGCTGGCA-ATTCA----TTAAATAAAACG--AAACCTATACCTCCATGAACT-G-----AA-TCGATC----------------------------------------------AGGGTTATTATACACTTTATT--------AA--------------TA-------------------------------------------CTTGTTAAAACGCTGTTT-----AGTTA-GTTCAAAATTA------------TAA--TATATTTATTATAC---GTTT----TTC--------TACAGCCAATATGGAGCAGCCCT---TTGAGGAAAATGCTGCTCTGCTCAACCACATGCTG
droTak1 scf7180000416016:146887-147034 - CTACAATTAAGTTTAT-TATTATT-GG-CCCCATTCT----G----TATCCTCTGCAGGGAAAACTGTAATA-----------------CATCCTGCAGCTGGTAAATTCA----TGAAATAAAACG--AAACCTATACCTCCATGAACT-G-----AAAGCAATG----------------------------------------------AGGTTTATTTTATATTTTACA--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491347:402437-402694 - CTACAATTAAGTTTAT-TTTTATT-AG-CACTTTTCT----G----TAACCTCTGCGAGAAAATCTGTAACA------------------ATCCTGCAGCTGGAA-AATCT----TGAAATAAAGCG--AAACCCATACCTCGATGAACT-G-----AAAGCTATA----------------------------------------------AAGTTAAATTTATATTTTGCA--------AC--------------TA---------------------------------------------TCTTACAAACGCTTGG-----AAGTTACTTACATATGT------------TAA--ACT------CTGAT---CTTT----GTC--------TTCAGCAAATATGGAGCAACCCT---TCGAGGAAAATGCTGCCTTGCTGAACCACATGCTG
droRho1 scf7180000780108:134180-134445 - CTACAATTAAGTTTAT-TTTTATT-AG-CACTTTTCT----G----TATCCTCTGCGAGAAAAATTGTAATA-----------------CATCCTGCAGCTGGAA-AATCT----TGAAATAAAGCG--AAACCTATACCTCCATGAACG-G-----AAAACTATG----------------------------------------------AAGATTAATTT-----TTGTA--------AC--------------TATTATAAAAATGCCGTTTAATTTATTAA-T-GT------GCAAT------------------------------TAATATTTAA------------TAA--GCT------CTGAA---CTTT----TTC--------TGCAGCTAATATGGAGCAACCCT---TCGAGGAAAACGCTGCTTTATTGAACCACCTGCTG
droFic1 scf7180000453948:302743-302983 - CTACAATTAAGTTTAT-TTTTATT-GG-CACCATTCT----G----TATCCTCTGCGAGGTAAACTGTAATA-----------------CATCCTGCAGTTGGCA-ATTCT----TGAAATAAAACG--AAACCTATACCTTCATGAACT-A-----AGAACCAGA----------------------------------------------AGGATTTTCTTCGATTTCATA--------A-ATATTGTTTGTTAA-----------TG----------------CTGTT------GCACT------------------------------TAA----CAC------------TTA--TTT------CT--T---TTTT----GCC--------ATCAGCTAATATGGAGCAGCCCT---TCGAGGAAAACGCTGCACTGCT------------G
droKik1 scf7180000302476:3363175-3363391 - CTACAATTAAGTTAAT-ATTTACC-GG-CACTGATTT----G----TATCCTCTGAGAGAGAAACTGTAAAA-----------------GATCCTGCAGCTGGCA-TTTCA----TTGAATAAAACTATAGAACTATACCTCCATAAACT-G-----TCAACTTAC----------------------------------------------AGGCTTG-----------TGCTTTAATTT--TAAT-------------------------------------------------------------------------------------TAATTAATCT------------TGA--------------AA---CTTT----ATT--------CCTAGCCAATATGGAGCAGCCGT---TCGAGGAAACTGTGGGCCTACT------------G
droAna3 scaffold_13266:10048637-10048874 - CTACAATTAAGTTTAA-TATTATC-TG-AATTACTTT----G----TAACCACTGCAAAAAAATTTGTAAAA-----------------CATTCTGCAGCTGGAA-AACCA----TGAAATAAAAAA--AA-ACTTTACCTCCATATATT-G-----TTCTCT-----------------------------------------------------------------TTTGAAATATTTA--TATTTAATTGTTGA-----------CG----------------GTATCTTGCTA---------------AACCTT------------------------------------C-------------TAAAT---CTTA----TCC--------TTCAGCTAACCTGGAACATCCGT---TTGAGGACAATGCCCCTCTTCTGAACCACATGCTG
droBip1 scf7180000396759:1765960-1766192 - CTACAATTAAGTTTAA-TATTATC-TG-CATTTCTTT----G----TAACGACTGCA-TAAAATTTGTAAAA-----------------CATTCTGCAGCTGGCA-AATCA----TGAAATAAAA----AAACCTATACCTCCATATATA-T--------TC-----------------------------------------------------------------TTTTGTAATATTTT--CATTTATTAAAAGA-----------TT----------------GTATCTTGCTA---------------AACCTT------------------------------------C-------------TATAT---CTTA----TAC--------TTCAGCTAACATGGAACATCCGT---TTGAGGATAATGCCCCTCTTCTGAACCACATGCTG
dp5 3:12215720-12215975 + CTATAATTAAGACTAG-TTTTATT-GG-CACTATTTT----G----TATCCACTGAAGGAGAAACTGTAATAGATAAT----------ATATCCTTCAACTGGCA-ATTAA----TTAAATAAAACA--AAAA-TTTACCTCCGGATGTT-T-CG--CAAACGA-------------------------------------TTACAT-------------AACATAATATTTA--------AT--------------TG-------------------------------------------TTCTCCGCCATAGCTAAT-----AAATGTCT-----------------------------------C--TA---TTTT----GTAAACTTTAACGCAGCCAATATGGAGCGATCGC---CGGACGACAGTGCACCTCTGTTGAACGACTTGCTT
droPer2 scaffold_44:399191-399446 + CTATAATTAAGACTAG-TTTTATT-GG-CACTATTTT----G----TATCCACTGAAGGAGAAACTGTAATAGATAAT----------ATATCCTTCAACTGGCA-ATTAA----TTAAATAAAACA--AAAA-TTTACCTCCGGATGTT-T-CG--CAAACGA-------------------------------------TTACAT-------------AACATAATATTTA--------AT--------------TG-------------------------------------------TTCTCCGCCATAGCTAAT-----ACATGTCT-----------------------------------C--TA---TTTT----GTAAAATTTAACGCAGCCAATATGGAGCGATCGC---CGGACGACAGTGCACCTCTGTTGAACGACTTGCTT
droWil2 scf2_1100000004822:2394344-2394604 - CTACAATTAATTAAGC-ATTTGCATT----ATATTCT----C----TGGTCTTTTTTTGAGCAGCTGGAAAATATTAA----------GTAAATAACTATTAGTA-ATGA------AAAGTAAAGAA--GAAAATAAACGTTCATAAATA-A-----CTCAAT--------------------------------------------------------TCTCCAAGTCCTTA--------A-AGCTAATTTGT---------------GGGGTTTAATTTAATG-----------------ATGTATG-----------------------CAA----CTC------------TAATGGAA---------ACTTTTGTT----TAC--------TCCAGCCCACACAGAGCGATCTGCAAACGATGACAATGCGCCACTGCTGAACGAAATGCTT
droVir3 scaffold_12875:14598321-14598583 - dvi_6901 CTACAATTAAGTTACG-TTTTATACAG-CATTTCTTT----ATTTTGCTGCGCTGTGAGC----CTTCAATT------C--AAACTGTAACTGCTACAGCTGGGC-TTTAA----GTAAATAAAATA-------------TCCAAA-ATATATAGTATTCG---------------------------------------CCA-----------------------CTTTTGG--------A------------GTA-----------TT----------------GTTTCTTGCTA-------GCTTTTCATCTGTCTTTGTTCATGTGTATAATG----C------------TGCATTTT------GTTTT---GTAT----ATG--------TGCAGCCAACATGGAGCAGACGT---TGGACGACAGTGCGGCCTTGCTGGATGATATGCTG
droMoj3 scaffold_6496:10077212-10077481 - CTACAATTAAGTTTACGTTTTATACATCCTCAATTCTCTTTCGTTTGCTGCGCTGTGAGC----CTTTAAGT------CTGCAACTGTAACTGCTCCAGCTGGGC-AATCA----GTAAATAAAAGA-------------TCCAAA-ATATATAGTATACA---------------------------------------CCATTATACCGGGGGCTTTGATTGCCTT---------------TCTTTCATT----------------------------------------------------------GATGC-GTTT-----ATCTGTGTAATT----T------------TGCATTTC---------AC---TTTTGTCTACA--------CGCAGCCAACCTGGATAAACCTT---TGGACGACAGCACGGCTCTGCTGGATGACATGCTG
droGri2 scaffold_15245:14606493-14606761 - CTACAATTAAGTTACA-TTTTGTATAA-CA-CACCTC----A----CCTGTGCTGGAAGCTAAACTCAAAA-------------CTGTTGCTGCTGCAGCTGAGC-ATTAACTAAGAAAATAAAATA-------------TCCACAAAA-TATAGTACTAGCT--GGTATTTACTAATGTATACATATATATTCCATAGAC--------------------------------------------------------CA-------------------------------------------ATATGGGGCATTTTGTTC-----ACGTTTGTAATT----T------------TACATTTC------GT--T---ATTT----GTA--------TGCAGCCAACATGGAGCAGCCAT---CGGATGAGCATATGGCCTTGATGGATGATTTGCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTACAACTAAGTT-AC-ATTTATT-GG-CACTATTCT----A----TATCCTCTGT-----AAACTGTAACA-----------------CAATCTGCAGCTGGCA-ATTTA----TAAAATAAAGCG--AAATCTATACCTCCACCAACT-G-----AAAGCT--G----------------------------------------------AGGTGTTTTAAATATTTTATA--------AA--------------TC-------------------------------------------TTGTTTGCAATGTGTTTT-----AATTGTGTAATAAATCA------------TGA--TTT------CTTAA---CTTT----GTC--------TACAGCCAATATGGAGCAACCAT---ACGAGGAAAGTGCCGCTCTGCTTAACCACATG---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................CG--AAATCTATACCTCCACCAACT-.................................................................................................................................................................................................................................................................................................................2312.00200000200000000000
.............................ACTATTCT----A----TATCCTCTGT-----AAACT......................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
..................................................................GTAACA-----------------CAATCTGCAGCT...................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
....................................................................AACA-----------------CAATCTGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................1912.00201010000000000000
..................................................................GTAACA-----------------CAATCTGCAGCTG..................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...................................................................TAACA-----------------CAATCTGCAGCTG..................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
......................................................GT-----AAACTGTAACA-----------------CAATCTGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
..............................CTATTCT----A----TATCCTCTGT-----A..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
....................................................CTGT-----AAACTGTAACA-----------------CAATCT.........................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........................................................................................AATCTGCAGCTGGCA-ATTT..........................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.....................................................TGT-----AAACTGTAACA-----------------CAATCTGCA......................................................................................................................................................................................................................................................................................................................................................................2311.00100000000100000000
..........................G-CACTATTCT----A----TATCCTCTGT-----AAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..........GTT-AC-ATTTATT-GG-CACT........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................TATT-GG-CACTATTCT----A----TATCCTCTGT-----AA.........................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACGAGGAAAGTGCCGCTCTGCTTA...........2511.00100000001000000000
..................................TCT----A----TATCCTCTGT-----AAACT......................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
CTACAACTAAGTT-AC-ATTTATG-GG-CACTATTCT----G----TATCCTCTGC-----AAACTGTAACA-----------------CATTCTGCAGCTGGCA-ATTTA----TGAAATAAAGCG--AAATCTATACCTCCACCAACT-G-----AAAGCT--G----------------------------------------------AGGTGTTTTAAATATTTTATA--------AA--------------TC-------------------------------------------TTTTTAGCAATGTCTTTT-----AATTGTGTAATAAATCT------------TGA--CTT------CTTAA---CTTT----GTC--------TACAGCCAATATGGAGCAACCCT---ACGAGGAAAGTGCCGCTCTGCTTAACCACATG---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................CTGTAACA-----------------CATTCTGCAGCTGGCA-ATT...........................................................................................................................................................................................................................................................................................................................................................2711.0010010
....................................................................AACA-----------------CATTCTGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............................CTATTCT----G----TATCCTCTGC-----AAACTGT....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.................ATTTATG-GG-CACTATTCT----G----..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................TCCTCTGC-----AAACTGTAACA-----------------CATTCTGCA......................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.............................ACTATTCT----G----TATCCTCTGC-----AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
........AAGTT-AC-ATTTATG-GG-CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................AAATAAAGCG--AAATCTATACCTCCACC......................................................................................................................................................................................................................................................................................................................2711.0010010
.....................ATG-GG-CACTATTCT----G----TATCCTCTGC-----...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
...............................................................ACTGTAACA-----------------CATTCTGCAGCTG..................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.................ATTTATG-GG-CACTATTCT----G----T.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACCCT---ACGAGGAAAGTGCCGC...................2111.0010001
.............................................................AAACTGTAACA-----------------CATTCTGCAGCTGG.................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..............................................TATCCTCTGC-----AAACTGTAACA-----------------CATTCTGC.......................................................................................................................................................................................................................................................................................................................................................................2911.0011000
dm3
CTACAACTAAGTT-AC-ATTTATT-GG-CACTATTCT----G----TATCCTCTGC-----AAACTGTAACA---------------------CTGCAGCTGGCA-ATTTA----TTAAATAAAGCG--AAATCTATACCTCCACCAACT-G-----AAAACT--G----------------------------------------------AGGTGTTTTATATATTTTATA--------AA--------------TC-------------------------------------------TTGTTTGCAATGTCTTTT-----AATTGCGTAA----TCA------------TGA--TCT------CTTAA---CTTT----GTC--------TACAGCCAATATGGAGCAACCCT---ACGAGGAAAATGCCGCTCTGCTTAACCACATG---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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....................................................................................................................TAAATAAAGCG--AAATCTATACCTCCA........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................G----TATCCTCTGC-----AAACTGTAACA---------------------CTGC.......................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GCTGGCA-ATTTA----TTAAATAAAGCG--AA.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACCCT---ACGAGGAAAATGCCG....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
....................TATT-GG-CACTATTCT----G----TATCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AAATAAAGCG--AAATCTATACCTCCACCAA....................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTAAATAAAGCG--AAATCTATACCTC..........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CCAACT-G-----AAAACT--G----------------------------------------------AGGTGT..............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AAATAAAGCG--AAATCTATACCTCCACC......................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................ATCCTCTGC-----AAACTGTAA..................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCCT---ACGAGGAAAATGC......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......................................................................A---------------------CTGCAGCTGGCA-ATTTA----TTAAAT...............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ACT-G-----AAAACT--G----------------------------------------------AGGTGTT.............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................................................................................................CG--AAATCTATACCTCCACCAACT-G-----A..........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTAAATAAAGCG--AAATCTATACCTCCACCA.....................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACTAAGTT-AC-ATTTATT-GG-CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CT---ACGAGGAAAATGCCGCTC.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................AAGCG--AAATCTATACCTCCACCAACT-G-----A..........................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CTGC-----AAACTGTAACA---------------------CTG........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.....................................................................ACA---------------------CTGCAGCTGGCA-ATTTA----T....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AACTGTAACA---------------------CTGCAGCTG..................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CG--AAATCTATACCTCCACCAACT-G-----AT.........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GG-CACTATTCT----G----TATCCTCTGC-----A..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CCAACT-G-----AAAACT--G----------------------------------------------AGGTGTT.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AACA---------------------CTGCAGCTGGCA-ATTTA----TTAAA................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TGTAACA---------------------CTGCAGCTGGT................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGTT-AC-ATTTATT-GG-CAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTACAACTAAGTT-AC-ATTTATT-AG-CACTATTTT----G----TATCCTCTGC-----AAACTGTAACA-----------------CATTCTGCAGCTGGCA-ATTTA----TAAAATAAAGCG--AAATCTATACCTCCACGAACT-G-----AAAGCT--G----------------------------------------------AGGTTTATTATATATTTTAAA--------AC--------------TA-------------------------------------------TTCTAAGCAATGTCTTTT-----AATTCTGTAATAAATCA------------TGA--TCT------CTTAA---CTTT----GTC--------TGCAGCCAACATGGAGCAACCCT---ACGAGGAAAGTGCAGCTCTACTTAACCACATG---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................GTAACA-----------------CATTCTGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................2112.0021000010
......................................................GC-----AAACTGTAACA-----------------CATTCTGC.......................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AACCCT---ACGAGGAAAGTGCAGCTC.................2411.0010010000
...............................................................ACTGTAACA-----------------CATTCTGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............T-AC-ATTTATT-AG-CACTATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.......................................................................................................................ATAAAGCG--AAATCTATACCTCCACGAAAA-.................................................................................................................................................................................................................................................................................................................2911.0010000100
.......................................................................................................................ATAAAGCG--AAATCTATACCTCCACGAT....................................................................................................................................................................................................................................................................................................................2711.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGCAACCCT---ACGAGGAAAGT........................2511.0010000100
..................................TTT----G----TATCCTCTGC-----AAACTGTAACA-----------------CA.............................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..................................................................GTAACA-----------------CATTCTGCAGCTGG.................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.......................................................................................................................ATAAAGCG--AAATCTATACCTCCAC.......................................................................................................................................................................................................................................................................................................................2411.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCCT---ACGAGGAAAGT........................1911.0010001000
..................................................................GTAACA-----------------CATTCTGCAGCTGGCA-..............................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.............................................................AAACTGTAACA-----------------CATTCTGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
droYak3
CTACAACTAAGTTAA--ATTTATT-GG-CACTATTTT----G----TATCCTCTGC-----AAACTGTAACA-----------------CATTATGCAGCTGGCA-TTTTA----TGAAATAAAGCG--AAAACTATACCTCCACGTACT-A-----AGAGCT--G----------------------------------------------AGGTTTAATATATATTTTATA--------AA--------------AA-------------------------------------------TTGTTGGCATTGTCTTAT-----AATTGTGTAATAAGTCA------------TGA--TCT------CTTAA---ATTT----GTC--------TACAGCCAATATGGAGCAACCCT---ACGAGGAAAGTGCCACTCTGCTTAACCACATG---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................TTT----G----TATCCTCTGC-----AAACT......................................................................................................................................................................................................................................................................................................................................................................................................1915.00531100000000
......................................................................................................................................TATACCTCCACGTACT-A-----AG.........................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................TACCTCCACGTACT-A-----AGAGCT--G----------------------------------------------....................................................................................................................................................................................................................................................2211.00110000000000
.................................................................TGTAACA-----------------CATTATGCAGCTG..................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
................................ATTTT----G----TATCCTCTGC-----AAACT......................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
..................................................................GTAACA-----------------CATTATGCAGCTGGCA-TTT...........................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................ACTATACCTCCACGTACT-A-----AGAGC......................................................................................................................................................................................................................................................................................................2411.00100000010000
.............................ACTATTTT----G----TATCCTCTGC-----AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
...............................................................................................................................................ACGTACT-A-----AGAGCT--G----------------------------------------------AGGT................................................................................................................................................................................................................................................1911.00100000010000
.............................ACTATTTT----G----TATCCTCTGC-----AAACT......................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
......................................................................................................................................TATACCTCCACGTACT-A-----AGAGCT--G----------------------------------------------A...................................................................................................................................................................................................................................................2511.00101000000000
..................................................................GTAACA-----------------CATTATGCAGCTGGC................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................ATACCTCCACGTACT-A-----AGAGCT--G----------------------------------------------AGGT................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................................................CACGTACT-A-----AGAGCT--G----------------------------------------------AGGT................................................................................................................................................................................................................................................2011.00100000010000
............................CACTATTTT----G----TATCCTCTGC-----A..........................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
CTACAATTAAGATTAT-TTTTATT-GG-CACCATTCT----G----TATCCTCTGCGAGAAAATTTGTAATA-----------------CATCCTGCAGATGGCA-ATTCA----TGAAATAAAACA--AAACCTATACCTCCATTACTT-G-----AAATCAATG----------------------------------------------AGGGGTATTTTTTATATCACT--------AC--------------TA-------------------------------------------TTTTTCAAAACGATTCTT-----AATTTCTTAA----GTATGTTTTAACTTTAAA--AAT------CTTAA---CTTT----GTT--------CGCAGCCAATATGGAGCAACCCT---TCGAGGAAAACGCTGCTCTGCTTAACCACATGATGSizeHit CountTotal NormTotal
No Reads
droBia1
CTACAATTAAGACTAT-TTTTATT-GG-CTCCATTCT----G----TATCCCCTGCAAGAGAAACTGTAATA-----------------CATCCTGCAGCTGGCA-ATTCA----TTAAATAAAACG--AAACCTATACCTCCATGAACT-G-----AA-TCGATC----------------------------------------------AGGGTTATTATACACTTTATT--------AA--------------TA-------------------------------------------CTTGTTAAAACGCTGTTT-----AGTTA-GTTCAAAATTA------------TAA--TATATTTATTATAC---GTTT----TTC--------TACAGCCAATATGGAGCAGCCCT---TTGAGGAAAATGCTGCTCTGCTCAACCACATGCTGSizeHit CountTotal NormTotal
No Reads
droTak1
CTACAATTAAGTTTAT-TATTATT-GG-CCCCATTCT----G----TATCCTCTGCAGGGAAAACTGTAATA-----------------CATCCTGCAGCTGGTAAATTCA----TGAAATAAAACG--AAACCTATACCTCCATGAACT-G-----AAAGCAATG----------------------------------------------AGGTTTATTTTATATTTTACA--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTACAATTAAGTTTAT-TTTTATT-AG-CACTTTTCT----G----TAACCTCTGCGAGAAAATCTGTAACA------------------ATCCTGCAGCTGGAA-AATCT----TGAAATAAAGCG--AAACCCATACCTCGATGAACT-G-----AAAGCTATA----------------------------------------------AAGTTAAATTTATATTTTGCA--------AC--------------TA---------------------------------------------TCTTACAAACGCTTGG-----AAGTTACTTACATATGT------------TAA--ACT------CTGAT---CTTT----GTC--------TTCAGCAAATATGGAGCAACCCT---TCGAGGAAAATGCTGCCTTGCTGAACCACATGCTGSizeHit CountTotal NormTotal
No Reads
droRho1
CTACAATTAAGTTTAT-TTTTATT-AG-CACTTTTCT----G----TATCCTCTGCGAGAAAAATTGTAATA-----------------CATCCTGCAGCTGGAA-AATCT----TGAAATAAAGCG--AAACCTATACCTCCATGAACG-G-----AAAACTATG----------------------------------------------AAGATTAATTT-----TTGTA--------AC--------------TATTATAAAAATGCCGTTTAATTTATTAA-T-GT------GCAAT------------------------------TAATATTTAA------------TAA--GCT------CTGAA---CTTT----TTC--------TGCAGCTAATATGGAGCAACCCT---TCGAGGAAAACGCTGCTTTATTGAACCACCTGCTGSizeHit CountTotal NormTotal
No Reads
droFic1
CTACAATTAAGTTTAT-TTTTATT-GG-CACCATTCT----G----TATCCTCTGCGAGGTAAACTGTAATA-----------------CATCCTGCAGTTGGCA-ATTCT----TGAAATAAAACG--AAACCTATACCTTCATGAACT-A-----AGAACCAGA----------------------------------------------AGGATTTTCTTCGATTTCATA--------A-ATATTGTTTGTTAA-----------TG----------------CTGTT------GCACT------------------------------TAA----CAC------------TTA--TTT------CT--T---TTTT----GCC--------ATCAGCTAATATGGAGCAGCCCT---TCGAGGAAAACGCTGCACTGCT------------GSizeHit CountTotal NormTotal
No Reads
droKik1
CTACAATTAAGTTAAT-ATTTACC-GG-CACTGATTT----G----TATCCTCTGAGAGAGAAACTGTAAAA-----------------GATCCTGCAGCTGGCA-TTTCA----TTGAATAAAACTATAGAACTATACCTCCATAAACT-G-----TCAACTTAC----------------------------------------------AGGCTTG-----------TGCTTTAATTT--TAAT-------------------------------------------------------------------------------------TAATTAATCT------------TGA--------------AA---CTTT----ATT--------CCTAGCCAATATGGAGCAGCCGT---TCGAGGAAACTGTGGGCCTACT------------GSizeHit CountTotal NormTotal
No Reads
droAna3
CTACAATTAAGTTTAA-TATTATC-TG-AATTACTTT----G----TAACCACTGCAAAAAAATTTGTAAAA-----------------CATTCTGCAGCTGGAA-AACCA----TGAAATAAAAAA--AA-ACTTTACCTCCATATATT-G-----TTCTCT-----------------------------------------------------------------TTTGAAATATTTA--TATTTAATTGTTGA-----------CG----------------GTATCTTGCTA---------------AACCTT------------------------------------C-------------TAAAT---CTTA----TCC--------TTCAGCTAACCTGGAACATCCGT---TTGAGGACAATGCCCCTCTTCTGAACCACATGCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................AAAA-----------------CATTCTGCAGCTGGAA-AACC..........................................................................................................................................................................................................................................................................................................................................................2412.002011000
................................................................TTGTAAAA-----------------CATTCTGCAGCTG..................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................AAATTTGTAAAA-----------------CATTCTGCAGCTGGA................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.........................................................................................CATTCTGCAGCTGGAA-AAC...........................................................................................................................................................................................................................................................................................................................................................1911.001000100
...........................................................................................TTCTGCAGCTGGAA-AACC..........................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
CTACAATTAAGTTTAA-TATTATC-TG-CATTTCTTT----G----TAACGACTGCA-TAAAATTTGTAAAA-----------------CATTCTGCAGCTGGCA-AATCA----TGAAATAAAA----AAACCTATACCTCCATATATA-T--------TC-----------------------------------------------------------------TTTTGTAATATTTT--CATTTATTAAAAGA-----------TT----------------GTATCTTGCTA---------------AACCTT------------------------------------C-------------TATAT---CTTA----TAC--------TTCAGCTAACATGGAACATCCGT---TTGAGGATAATGCCCCTCTTCTGAACCACATGCTGSizeHit CountTotal NormTotal
No Reads
dp5
CTATAATTAAGACTAG-TTTTATT-GG-CACTATTTT----G----TATCCACTGAAGGAGAAACTGTAATAGATAAT----------ATATCCTTCAACTGGCA-ATTAA----TTAAATAAAACA--AAAA-TTTACCTCCGGATGTT-T-CG--CAAACGA-------------------------------------TTACAT-------------AACATAATATTTA--------AT--------------TG-------------------------------------------TTCTCCGCCATAGCTAAT-----AAATGTCT-----------------------------------C--TA---TTTT----GTAAACTTTAACGCAGCCAATATGGAGCGATCGC---CGGACGACAGTGCACCTCTGTTGAACGACTTGCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................GAGAAACTGTAATAGATAAT----------ATATCCTT........................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.............................................................................T----------ATATCCTTCAACTGGCA-ATT...........................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
...............................TATTTT----G----TATCCACTGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................CG--CAAACGA-------------------------------------TTACAT-------------AACATA......................................................................................................................................................................................................................................2111.0010100000000
..................TTTATT-GG-CACTATTTT----G----TATCCACT..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................CATAGCTAAT-----AAATGTCT-----------------------------------C--TA---................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCACCTCTGTTGAACGAC......2111.0010100000000
........................................................................................................................................TACCTCCGGATGTT-T-CG--CAAACG.....................................................................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................A-TTTACCTCCGGATGTT-T-CG--C..........................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................TT----G----TATCCACTGAAGGAGAAACTGTA...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
...................................................................................................................................AA-TTTACCTCCGGATGTT-T-CG--C..........................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGACAGTGCACCTCTGTTGAAC.........2611.0010100000000
.......................................................................................................................................TTACCTCCGGATGTT-T-CG--CAA........................................................................................................................................................................................................................................................................................................2111.0010000001000
........................................................AGGAGAAACTGTAATAGATA............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAGCGATCGC---CGGACGACA..........................2511.0010100000000
droPer2
CTATAATTAAGACTAG-TTTTATT-GG-CACTATTTT----G----TATCCACTGAAGGAGAAACTGTAATAGATAAT----------ATATCCTTCAACTGGCA-ATTAA----TTAAATAAAACA--AAAA-TTTACCTCCGGATGTT-T-CG--CAAACGA-------------------------------------TTACAT-------------AACATAATATTTA--------AT--------------TG-------------------------------------------TTCTCCGCCATAGCTAAT-----ACATGTCT-----------------------------------C--TA---TTTT----GTAAAATTTAACGCAGCCAATATGGAGCGATCGC---CGGACGACAGTGCACCTCTGTTGAACGACTTGCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGCCAATATGGAGCC...........................................2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCGC---CGGACGACAGTG.......................2111.001000001
..ATAATTAAGACTAG-TTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................GAAGGAGAAACTGTAATAG...............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................CACTATTTT----G----TATCCACTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTCTGTTGAACGACT.....2111.001000001
droWil2
CTACAATTAATTAAGC-ATTTGCATT----ATATTCT----C----TGGTCTTTTTTTGAGCAGCTGGAAAATATTAA----------GTAAATAACTATTAGTA-ATGA------AAAGTAAAGAA--GAAAATAAACGTTCATAAATA-A-----CTCAAT--------------------------------------------------------TCTCCAAGTCCTTA--------A-AGCTAATTTGT---------------GGGGTTTAATTTAATG-----------------ATGTATG-----------------------CAA----CTC------------TAATGGAA---------ACTTTTGTT----TAC--------TCCAGCCCACACAGAGCGATCTGCAAACGATGACAATGCGCCACTGCTGAACGAAATGCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................CCACACAGAGCGATCTGCAAACGAT..............................2511.00100010
.............................................................................................................................................TCATAAATA-A-----CTCAAT--------------------------------------------------------TCTCC........................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................ATG-----------------ATGTATG-----------------------CAA----CTC------------TAATGGAA---------AC...................................................................................2611.00100010
..............................................................................................................................................................................................................................................................................................................................................A----CTC------------TAATGGAA---------ACTTTTGTT----T.......................................................................2211.00100010
.......................................................................................................TA-ATGA------AAAGTAAAGAA--GA.....................................................................................................................................................................................................................................................................................................................................1920.50100010
.................ATTTGCATT----ATATTCT----C----TGGT......................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
..........................................................................................................ATGA------AAAGTAAAGAA--GAAAAT.................................................................................................................................................................................................................................................................................................................................2120.50100010
...........................................................................................AATAACTATTAGTA-ATGA------AAAGT...............................................................................................................................................................................................................................................................................................................................................2320.50100100
CTACAATTAATTAAGC-ATTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
droVir3
CTACAATTAAGTTACG-TTTTATACAG-CATTTCTTT----ATTTTGCTGCGCTGTGAGC----CTTCAATT------C--AAACTGTAACTGCTACAGCTGGGC-TTTAA----GTAAATAAAATA-------------TCCAAA-ATATATAGTATTCG---------------------------------------CCA-----------------------CTTTTGG--------A------------GTA-----------TT----------------GTTTCTTGCTA-------GCTTTTCATCTGTCTTTGTTCATGTGTATAATG----C------------TGCATTTT------GTTTT---GTAT----ATG--------TGCAGCCAACATGGAGCAGACGT---TGGACGACAGTGCGGCCTTGCTGGATGATATGCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................ATTTCTTT----ATTTTGCTGCGCTGTGAGC----........................................................................................................................................................................................................................................................................................................................................................................................................2713.003001200000000000000000000000000000000000000000000000000000000000
.............................ATTTCTTT----ATTTTGCTGCGCTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................2412.002000100000000000000000000000000001000000000000000000000000000000
...............G-TTTTATACAG-CATTTCTTT----...............................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000002
............................................................................................................................................................................................................................................................................................................................................................................................................................AGACGT---TGGACGACAGTGCGG....................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CTGTCTTTGTTCATGTGTAT...........................................................................................................................2011.001000000000000000000000000100000000000000000000000000000000000000
.....................ATACAG-CATTTCTTT----ATTTTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................AACTGCTACAGCTGGGC-T.............................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTTTGTTCATGTGTATAATG----...................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................CATCTGTCTTTGTTCATGTGT.............................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTCG---------------------------------------CCA-----------------------CTTTTGG--------A------------GTA-----------TT----------------GTTTC.....................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
............................CATTTCTTT----ATTTTGCTGCGCTGTGAGC----........................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................CTGGGC-TTTAA----GTAAATAA.............................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
...............................TTCTTT----ATTTTGCTGCGCTGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
...................................TT----ATTTTGCTGCGCTGTGA..............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGACGT---TGGACGACAGTGCGGCCTT................2511.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGACGT---TGGACGACAGTGC......................1911.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGCGGCCTTGCTGGATG........2111.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................AACTGCTACAGCTGGGC-TTTAA----.....................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................ACAGCTGGGC-TTTAA----GTA..................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
................................................................CTTCAATT------C--AAACTGTAACTGCTAC.......................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................CTTTTGG--------A------------GTA-----------TT----------------GTTTCTTG..................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................GCTGGGC-TTTAA----GTAAATAAAATA-------------TCC.........................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
...................................................GCTGTGAGC----CTTCAATT------C--AAACTGT................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAGACGT---TGGACGA............................2011.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................T------C--AAACTGTAACTGCTACAGCTGGGC-C.............................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACGT---TGGACGACAG.........................1911.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGT---TGGACGACAGTGC......................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGTAACTGCTACAGCTGGGC-T.............................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
..........................................TTTTGCTGCGCTGTGAGC----C.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................T------GTTTT---GTAT----ATG--------TGCAGCC......................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGTAACTGCTACAGCTGGGC-TT............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................CTGTAACTGCTACAGCTGGGC-T.............................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTTGTTCATGTGTATAATG----...................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
.................................................................................................AGCTGGGC-TTTAA----GTAAATAAA............................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
..............................................GCTGCGCTGTGAGC----CTTCAATT------..........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGCGGCCTTGCTGGAT.........2011.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................TTCG---------------------------------------CCA-----------------------CTTTTGG--------A------------GTA-----------TT----------------GTTTCT....................................................................................................................................................................2611.001000000000000000000000000000000001000000000000000000000000000000
......................................................GTGAGC----CTTCAATT------C--AAAC...................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
...................................TT----ATTTTGCTGCGCTGTGAAA----........................................................................................................................................................................................................................................................................................................................................................................................................2170.141001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTACAATTAAGTTTACGTTTTATACATCCTCAATTCTCTTTCGTTTGCTGCGCTGTGAGC----CTTTAAGT------CTGCAACTGTAACTGCTCCAGCTGGGC-AATCA----GTAAATAAAAGA-------------TCCAAA-ATATATAGTATACA---------------------------------------CCATTATACCGGGGGCTTTGATTGCCTT---------------TCTTTCATT----------------------------------------------------------GATGC-GTTT-----ATCTGTGTAATT----T------------TGCATTTC---------AC---TTTTGTCTACA--------CGCAGCCAACCTGGATAAACCTT---TGGACGACAGCACGGCTCTGCTGGATGACATGCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................AACTGCTCCAGCTGGGC-AATCA----GTA..................................................................................................................................................................................................................................................................................................................................................2512.002200000
............................................TTGCTGCGCTGTGAGC----CTT.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................TTGCCTT---------------TCTTTCATT----------------------------------------------------------GATGC-............................................................................................................................................2111.001100000
................................................................CTTTAAGT------CTGCAACTGTAACT............................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................AAGT------CTGCAACTGTAACTGCT.........................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............TTACGTTTTATACATCCTCAATTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................................TTTGCTGCGCTGTGAGC----CTT.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................................CTTTCGTTTGCTGCGCTGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
............TTACGTTTTATACATCCTCAATTCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................AACTGCTCCAGCTGGGC-AATCA----GTAAAT...............................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
CTACAATTAAGTTACA-TTTTGTATAA-CA-CACCTC----A----CCTGTGCTGGAAGCTAAACTCAAAA-------------CTGTTGCTGCTGCAGCTGAGC-ATTAACTAAGAAAATAAAATA-------------TCCACAAAA-TATAGTACTAGCT--GGTATTTACTAATGTATACATATATATTCCATAGAC--------------------------------------------------------CA-------------------------------------------ATATGGGGCATTTTGTTC-----ACGTTTGTAATT----T------------TACATTTC------GT--T---ATTT----GTA--------TGCAGCCAACATGGAGCAGCCAT---CGGATGAGCATATGGCCTTGATGGATGATTTGCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................TTGTATAA-CA-CACCTC----A----CCTGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
...................................TC----A----CCTGTGCTGGAAGCTAAA........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.................................................................................................................................................AAAA-TATAGTACTAGCT--G..................................................................................................................................................................................................................................................................................................1811.00110
.........................................A----CCTGTGCTGGAAGCTAAACTCA....................................................................................................................................................................................................................................................................................................................................................................................................2311.00101
..........................A-CA-CACCTC----A----CCTGTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 11:46 PM