ID:

dsi_27408

 Coordinate:

3l:7243316-7243517 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7242806_7243345_-]; five_prime_UTR [3l_7243346_7243458_-]; exon [3l_7242806_7243458_-]

No Repeatable elements found

mature
star
  1. dsi_27408  3l:7243366-7243380 -
  2. 3r:4904202-4904216 -

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------#################################################################################################################################################################################################
GGCTGGCTCTGCTCGTGGTCGAGCGGCTGCACCTGAACATCAAGTGCCAGGTGAGCGAGGCACCCAGCAGGCCTGGGTGATTCCACTTAGTTGTCACTGCCGATCGAAATCTCAGTTTTCATTTGTGCTTCTAGCATACGAAGGGTACAAATACTTAAATTCTCAAGTGATAAATCTTTTTCTTGTTTGTTTCTCTGTTAAAATTCTATCGTCTGCTCTGCGATGGCCACCATAACCAAACGTAAAAATCAGACTGCAAAGGATCGGAGCCGTACAGATGCCGCTACGGCGCTTCGCAGGCT
*******************************************************************************************************************************************************************************************..................(((((((.......))))))).....*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
.......................................................................................................................................ATACGGAGGCTACACATACTT.................................................................................................................................................. 21 3 2 1.50 3 3 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTGCTCTGCGATGGCCACC....................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAAAATCAAACGCAAAAATCAGA................................................. 23 3 3 0.67 2 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................TGTTTCTCTGTTAAA.................................................................................................... 15 0 2 0.50 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TGGTTTGTTTCTCTGTTATA.................................................................................................... 20 2 5 0.20 1 0 0 1 0 0 0 0 0
.......................................................................................................................................ATACGGAGGCTACACATACT................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0
.........TGCTCGTGATCGACCGG.................................................................................................................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................AGCAGAGGATCGGAGCCCTA............................ 20 3 7 0.14 1 0 0 0 0 0 1 0 0
...........TTCGTGGTCGAGCGGGTGCT............................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................ATACCGCGACGCCGCTTCG...... 19 3 10 0.10 1 0 0 0 0 1 0 0 0
...................................................................................................................................TGGCAGACGAAGGGTAAAAA....................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................AATCAGACTGCCAAGAA....................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CCGACCGAGACGAGCACCAGCTCGCCGACGTGGACTTGTAGTTCACGGTCCACTCGCTCCGTGGGTCGTCCGGACCCACTAAGGTGAATCAACAGTGACGGCTAGCTTTAGAGTCAAAAGTAAACACGAAGATCGTATGCTTCCCATGTTTATGAATTTAAGAGTTCACTATTTAGAAAAAGAACAAACAAAGAGACAATTTTAAGATAGCAGACGAGACGCTACCGGTGGTATTGGTTTGCATTTTTAGTCTGACGTTTCCTAGCCTCGGCATGTCTACGGCGATGCCGCGAAGCGTCCGA
***********************************************************************..................(((((((.......))))))).....******************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
...................................................................................................................................................................................................................................................TGTTTAGTCTGTTGTTTCCTA...................................... 21 3 7 1.14 8 0 0 5 0 3 0 0 0
.....CGAGATGAGGACCACCTCGCCG................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TTCGGCATGTCTACGGCGAT................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTTCGGCATGTCTACGGCGATG............... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................GTATGCTTCCCATGTCAAT..................................................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................CATGTCTACGGCGATCCT............. 18 2 3 0.33 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................TGGTTTACATTTTCAGTCTAA............................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................TGTTTAGTCTGTCGTTTCC........................................ 19 2 5 0.20 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGTTTAGTCTGTCGTTTCCGA...................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CCGCGATGCCGCAAAG....... 16 2 20 0.10 2 0 2 0 0 0 0 0 0
.........ACGAGCACCTGCTCGACGAC................................................................................................................................................................................................................................................................................. 20 2 10 0.10 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................TTTTTAGTCTGTTGTTTCCGA...................................... 21 3 13 0.08 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................................................CGGCGATGTCGCAAAGTGT.... 19 3 17 0.06 1 0 0 0 1 0 0 0 0
....................................................................................................................AAAGTAAAGAAGAAGATGGTA..................................................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................CGCTGCAGCGATGCGTCCG. 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Generated: 04/24/2015 at 01:44 AM