ID:

dsi_27406

 Coordinate:

2l:6255045-6255270 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.8 -14.4 -14.4 -14.2

Flybase annnotation

CDS [2l_6255271_6255277_-]; five_prime_UTR [2l_6255278_6255436_-]; exon [2l_6255271_6255436_-]; exon [2l_6254977_6255044_-]; CDS [2l_6254977_6255044_-]; intron [2l_6255045_6255270_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCACCCACTCAGTGCCCAGGCTAGCAACACAAGTCCGGCAAAATGGGAAGTAAGTAAACGTCATCGCCAGACATCTTCCCCAAAATCGGGGAGTGCAGCGGTTTTTGTGTGAAGTGCCGCCCTTGCAGTGCCGCTCGCACCCTTGTCGCTCATTGCTTACGTATACAAAAAAGATTCGGCGTGCGCCGCTCGTTGTGTCCGAATCGAAATCGCAATTAATTGAAAATGGCCTAAGAAACGTAACTAATTCGGCTGCCTTAATTCACTATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATC
**************************************************************************************************************************************..((......((.((....(((....((.((((((........((((....))))....)))))).))...)))...))))......))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 SRR902009
testis
 M024
male body		 M025
embryo
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
...........................................................................................................................................................................................................ATCGAAATCGCAATTAATTG....................................................................................................... 20 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AGTATACTGCCGGAAATC 18 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGT............... 19 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................CTCGCACCCTTGTCGCTCAT............................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AATCAAGTTCCTGGAAGTTATC.............................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TACGTATACAAAAAAGATTC.................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................TGCGCCGCTCGTTGTGTCCG............................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................ATCAAGTTCCTGGAAGTTATCAAACCGTT...................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................AACACAAGTCCGGCAAAATGGGAATCA................................................................................................................................................................................................................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GTAACTAATTCGGCTGCCT................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AGTTATCAAACCGTTCTGC.................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AATCGAAATCGCAATTAATTG....................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCCTGGAAGTTATCAAACCGTTCTGC.................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................TACAAAAAAGATTCGGCGTG.............................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TCGGGGAGCGCTGCGGTTTT............................................................................................................................................................................................................................ 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................CAGGCTAGCAACACAAGTCCGGC.............................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................AACACAAGTCCGGCAAAATG........................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................CAAAAAAGATTCGGCGTGCGC........................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................TCGGGGAGTGCAGCGGTTTTT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................AACACAAGTCCGGCAAAATGGGA..................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAGCAACACAAGTCCGGCAAAATG........................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATCAAACCGTTCTGCAGTATACTGCC....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGGGGACTGCAGCGGTTTT............................................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................ACGTCATCGCCAGACATCTTC....................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................ATGGCCTAAGAAACGAAACTAATTCG.......................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................AATTCGGCTGCCTTAATTCAC........................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AAAAAGATTCGGCGTGCGAC.......................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGCGCCGCTCGTTGTGTCC............................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAATGGCCTAAGAAACGTAACTAA.............................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................CTAGCAACACAAGTCCGGC.............................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGTATACTGCC....... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CAAACCGTTCTGCAGTATACTGCC....... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AGTTATCAAACCGTTCTGCAG................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................GGAAGTTATCAAACCGTTCTGCA................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TAATTCGGCTGCCTTAATT.............................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................AGGCTAGCAACACAAGTC.................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................TGGGAAGCAAGTAAACATCAGC.................................................................................................................................................................................................................................................................... 22 3 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................TACAAAAAAGATTCGGCGTGC............................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GAAGTTATCAAACCGTTCTGC.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATCGGGGAGTGCAGCGGTTT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GTAACTAATTCGGCTGCC.................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................CTAGGAAGACAAGTCCGGCAAAA.......................................................................................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........AGTGCCCAGGCTAGCAACACAAGTCCG................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GTTCTGCAGTATACTGCC....... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCCGGCAAAATGGGAATCAAGTT............................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................ACCGTTCTGCAGTATACTG......... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................GTTCCTAGAAGTTATCAAACC......................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GGTCGTTGTGTCCGAA.......................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................GGTCGTTGTGTCCGAAAGGA...................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................GCAGTCGAGTTGCTGGAGGTT................................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................GAGTGCAGCTGTGTTTGTGTGAG.................................................................................................................................................................................................................... 23 3 9 0.33 3 0 0 0 0 0 0 0 3 0 0 0 0 0
............................................................................................................................................................................................GGTCGTTGTGTCCGA........................................................................................................................... 15 1 12 0.25 3 0 0 0 0 0 0 0 0 0 0 3 0 0
................................................................................TCAAAATCGGGGAGTGCC.................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................CGTTGTGTCCGAAAGGA...................................................................................................................... 17 2 11 0.18 2 0 0 0 0 0 0 0 0 0 0 2 0 0
............................................................................................................................................................................................GGTCGTTGTGTCCGAAAGG....................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................GGGAATCAAGTTCCTGGAAGT.................................. 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TCCACTATGTGCAGTCA............................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................AGGTCGTTGTGTCCGAA.......................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................GAGTGCAGCTGTGTTTGTGTG...................................................................................................................................................................................................................... 21 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................ATCAAGTTCCTGGAA.................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................AGTGCGGCTGTATTTGTGTGA..................................................................................................................................................................................................................... 21 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2
........................................................................................................................................................................................................................................................................................GTCCCGGGAAGTTATC.............................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CGGTGGGTGAGTCACGGGTCCGATCGTTGTGTTCAGGCCGTTTTACCCTTCATTCATTTGCAGTAGCGGTCTGTAGAAGGGGTTTTAGCCCCTCACGTCGCCAAAAACACACTTCACGGCGGGAACGTCACGGCGAGCGTGGGAACAGCGAGTAACGAATGCATATGTTTTTTCTAAGCCGCACGCGGCGAGCAACACAGGCTTAGCTTTAGCGTTAATTAACTTTTACCGGATTCTTTGCATTGATTAAGCCGACGGAATTAAGTGATAAACGTCAGTTCAAGGACCTTCAATAGTTTGGCAAGACGTCATATGACGGCCTTTAG
*******************************************************************************************************..((......((.((....(((....((.((((((........((((....))))....)))))).))...)))...))))......))************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR1275487
Male larvae		 SRR902008
ovaries
.GGTGGGTGAATCACG...................................................................................................................................................................................................................................................................................................................... 15 1 20 4.95 99 0 98 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TTGCGGCGAGCAACACAGGC............................................................................................................................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACAGCGAGTAACGAATGCATAT................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................CGTTGTGTTCAGGCCGTTTTAC........................................................................................................................................................................................................................................................................................ 22 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0
..................TCCGATCGTTGTGTTCAGGCC............................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CCGCACGCGGCGAGCAACACAGGCTT.......................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................AACACAGGCTTAGCTTTAGCGT............................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACAGCGAGTAACGAATGCATA................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.GGTGGGTGAGTCACGGGTCCG................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................AGGCCGTTTTACCCTTCATTC............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................TTACCCTTCATTCATTTGCA........................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CGACGGAATTAAGTGATAAACG.................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................CCGGATTCTTTGCATTGATTA............................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................TTCATTCATTGGCAGTAGCGG................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AAGCCGACGGAATTAAGTGGT......................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................TAGCGGTCTGTAGAAGGGGTT.................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GGCGGGAACGTCACGGCGAGC............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GTCATATGACGGGCT.... 15 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................TTCACGGCGGGAACGTCACGGC................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................AGTTTGGCAAGACGTCATATG........... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................ACGTCAGTTCAAGGACCTTCA.................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGCCAAAAACACACTTCAC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................TCCGATCGTTGTGTTCAGG................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................TTTACCCTTCAATCATTGGCA........................................................................................................................................................................................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................CGTGTTCAGGCCGTTTTAC........................................................................................................................................................................................................................................................................................ 19 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................GCGATCTGTAGAAGCGG.................................................................................................................................................................................................................................................... 17 2 6 0.50 3 0 0 0 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................CAAACGTCAGTTCAAGAA........................................ 18 2 10 0.40 4 0 0 1 0 0 3 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ACGTCCTATGACGGCCTC... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ACAAACGTCAGTTCAAGAA........................................ 19 2 6 0.33 2 0 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................TCTCACGTCGACACAAACACACT..................................................................................................................................................................................................................... 23 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................GCGATCTGTAGAAGCG..................................................................................................................................................................................................................................................... 16 2 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GTTTGGCAAGACGTCGTGTGG.......... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
....GGGGGAGTCACGGGT................................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TTTGACGGCCTTTAG 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................ACTCACGTCGACACAAACACACT..................................................................................................................................................................................................................... 23 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TAAAGGTCAGTTCAA........................................... 15 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCATTTGTTTTTTCTA...................................................................................................................................................... 17 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCGCGGGAACTGCGAGTGA........................................................................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
..GTGGGTGAATCACGG..................................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GTCATATGACGGGCTG... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
CGGTCGGTGAGTCGCGGGTT.................................................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:6254995-6255320 - dsi_27406 GCCA---CCCACTCAGTG--------CCCAGGCTAGC---AACACAAGTCCGGCAAAATGGGAAGTAAGTAAACGTCATCGCCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAGTGCCG------------C-TCGCA--CCCTTGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTCGTTGTGTCCGAA--TCG---AAATCGCA-----------------------------ATTAA-TTGAAAA-TGGCCT------A-----------AG----------AA---------------------------------ACGT---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATC
droSec2 scaffold_5:4529344-4529669 - GCCA---CCCACTCAGTG--------CCCAGGCTAGC---AACACAAGTCCGGCAAAATGGGAAGTAAGTAAACGTCATCGCCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAATGCCG------------C-TCGCA--CCCTTGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTCGTTGTGTCCGAA--TCG---AAATCGCA-----------------------------ATTAA-TTGAAAA-TGGCCT------G-----------AG----------AA---------------------------------ACGT---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAGGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATC
dm3 chr2L:6480052-6480373 - GCCA---CCCACTCAGTG--------CCCAGACTAGC---AACACAAGTCCGGCAAAATGGGAAGTAAGTAACCGTCATCGCCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAATGCCG------------C-TCGCA--CCCTTGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTCGTTGTGTCCGAA---------AATCGCA-----------------------------ATTAA-TTAAAAA-TGGCCT------G-----------AG----------AA---------------------------------ACGT---AACTAATTCG-GTTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATC
droEre2 scaffold_4929:15388892-15389209 - GCCA---CCCACACAGTT--------CCCAGGCTAGC---TACACAAGTCCGGCAAAATGGGAAGTAAGTAACCGTCATCGTCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAATGCCG------------C-TCGCA--CCCCCGT-----TGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---GCGCTCGTTGTGTCCAAA---------AATCGCA-----------------------------ATTAA-TTGAAAA-TACCCT-------------------------------G---------------------------------ACGC---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATC
droYak3 2L:6436491-6436813 + GCCA---CCCACTCAGTT--------CCCAGGCTAGC---TACACAAATCCGGCAAAATGGGAAGTAAGTAACCGTCATCGTCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTA------AAGTGCCGCCC-----------------------------TTGCAGTGCCG------------C-TCGCA--CCCCCGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCGGCGCCGTTCGTTGTGTCCGAA---------AATCGCA-----------------------------ATTAA-TTGAAAA-TACCCT-------------------G----------AA---------------------------------ACGC---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATC
droEug1 scf7180000409463:1904966-1905283 - GCCA---CCCACTCATAT--------CCCAGGCGAGCAGTGACACAAGTCCGGAAACATGGGGAGTAAGTAGA-----ACGCCA-GACA------TC----CTAAAATCACCA--AAGTGCAGTGGTTT---CTGTGTGA-----AAGTGCCGCCC-----------------------------TGGCGATGCCG------------C-TCGCA--CCCCCGT-----TGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CC--TCGTTGTGACCGAA--------AAATTGCA-----------------------------ATTAAA-TGCAAAG-CCTCT-------------------A----------GA---------------------------------ACGCAGTGCCTAATGCA-GTTCTTTCCATTCACT-TTTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCAGAAATC
droBia1 scf7180000302422:2995713-2996033 + GCCA---CCCACCCAGTT--------CCCAGGCGAGCGCTAGCACAAGTCCGGCAAAATGGGAAGTAAGTAGA-----ACGGC-CG-CAGTC---------TGCGGCTCC--G--GAGTGCAGCGGTTT----TGTGTGA-----AAGTGCCGCCC-----------------------------CTGCGATGCCGCTC----TCTCTC-TCGCA--CC-CCGT-----CGCTCGCTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--AAC-----------------CCGAAAACCGAGAAAACTGCAATTG----------------------CTGGTTG-C-CAAAGAG---TCT------G-----------CA----------TC---------------------------------GCGT---GTCTAATGCC-TCCGTTTTCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATC
droTak1 scf7180000415858:224270-224583 + GCCC--------------------------------CGCTAGCACAAGTCCGGCAAAATGGGAAGTAAGTAGA-----ACGGCA-GACA------GAATCTCCACAATTC-GG--GAGTGCAGCGGTTT---GTGTGTGA-----CAGTGCCGCCC-----------------------------CTGCGATGCCGCTC----TCTCGC-TCGCA--CCCCCGT-----CGCTCGTTGCTTACGTATACAAAAAA-GATT--------------CG----------GC-------------TTCGGCGTGCCCGAA--------AAACTGCAATTGGAAATGAAG----AA------------GAA-CGGAAAAG-TCCCT------G-----------------------AAAC-------------------------------GCGT---TTCTAATGCC-ATTGTTTCCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATC
droEle1 scf7180000490970:488003-488318 + GCTC---TTTACTC-------------------GAGCGCTAACACAAGTCCAGCAAAATGGGAAGTAAGTAAA-----GCGCA-GC-CAAGT---------CGAAAATCCCGG--GAGTGCAGCGGTTT---TTGTGTGA-----AAGTGCCGCCC-----------------------------T-GCGATGCCGATTCCGATTCCGC-TCGCA--CCCCCGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCA--TGCG---CCGCTGAGTGTGCCTGAA--------AAACTGCA-----------------------------ACTAAA-TGAAAAGT----G------C-----------GA----------AA---------------------------------ACAC---GTCTAATTCA-ATGCTTTTCATTCACT-ATTTGCAGTCAAGTTTCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATC
droRho1 scf7180000779524:177046-177364 - GCTC---CCCACTCAGTT--------CCCAGGCGAGCGCTAACACAAGTCCAGCAAAATGGGAAGTAAGTAAA-----GCC-CA-GCCATGT---------CGAAAATCCCGG--GAGTGCAGCGGTTT----TGTGTGA-----AAGTGCCGCCC-----------------------------T-GCGATGCCGATT----C--CGC-TCGCA--CCCCCGT-----CGCTTATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTGACAGTGGCTAA---------AAACTGCA-----------------------------ATTAAA-TAAAAAGT----C------C-----------GC----------TA---------------------------------ACGC---GTCTAATGCA-ATACTTTTCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTAATCAAACCCTTCTGCAGTATACTGCCGGAAATC
droFic1 scf7180000453973:69913-70226 + GAT----CCCACTCAGTG--------CCCAAGCGAGCGCTAAAACAAGACCAGCAAAATGGGAAGTAAGTAAA-----TCGCT-AG-CGGGC---------CGAGAATCCCGG--GAGTAAAGCGGTT----GTGCGTGA-----AAGTGCCGCCC-----------------------------CTGCGATGCCG------------C-TTGCA--CCCCGGT-----CGCCCATTGCTTACGTATACAAAAAA-GACT--------------CG----------GCG--TGCT---TCGCTGACTGTGCCCGAA--------AAACTGCA-----------------------------GTTAAA-TGAAAAGT----C------C-----------AA----------TA---------------------------------ACGC---GTCTAATGCA-ATGCTCTTCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATC
droKik1 scf7180000302590:45328-45630 - AGT----CCCAC-----------------------ACACTAAATCAGGAAAAACACAATGGGAAGTAAGTAAA-----TCGAC-GA-AGAGC------AGTGGC-AATCGGGA--AAGAGCAGCAGAAAAAGCAGTGAAA-----AAGTGCCGCCT-----------------------------TTACAATGCCG------------C-TTGCA--CCCCCGT-----CACTCTTTGCTTACGTATACAAAAAG-ATTT--------------CG----------GCG--TGCG---CCCTTAATTGTGCCTAAA-----------CCGT--------------------------------------------TGGCTG------GTGAAAGAAAA-CA----------AA---------------------------------GCCC---GTCTAATTCAAGTTCATTTCATCCACC-ATTTGCAGTAAAATTCCTGGAAGTAATTAAACCCTTCTGCAGTATACTGCCGGAAATT
droAna3 scaffold_12916:13601692-13601988 + GGGACTCCTCCCTCGGCA--------CCCA------CGTCAACACAGATCCACCAAGATGGGAAGTAAGTAGA-----CTGCG-GC-TC---ATAA-----CTAAAATCGGGA--AAGTGCAGCAAA---------GTC------GAGTGCCGCCT-----------------------------TTG----GCCG------------C-----------CCGA-----CGC-CTTTGCTTACGTATACAAAAAAAAATTCGA-TTC-------CG----------CCG--TGTT---CCACCAATAGTG--------------------CA-----------------------------CT-------GAT---GGC-T-GAAACCT---------------------------------------GGCTAGCAATGG------ATCC---GTCTAATTCC-TGCCTTTCCATTCACT-TTTCGCAGTCAAATTCCTGGAAGTCATCAAGCCTTTCTGCAGTATACTGCCGGAAATT
droBip1 scf7180000396535:573474-573763 + GGGA---CTC-CTCGGCT--------CCCA------CGTCAACACAGATCCACCAAGATGGGAAGTAAGTAGA-----CTGCG-GG-CT---ATAA-----CTAATATCGGGA--AAGTGCAGCAAA---------GTC------GAGTGCCGCCT-----------------------------TGG----GCCG-----------------------CCCGT-----CGC-CTTTGCTTACGTATACAAAAAA-T--TCGA-TT--------CC----------GCC-GTGTG---CCTATAATAGTGCCCTGA--------AAGCTGGA-----------------------------TC------------------------CT---------------------------------------GGCTAACAATGG------ATGC---ATCTAATTCC-TACCTTTTCAATCACT-TTTTGCAGTCAAATTCCTGGAAGTCATCAAACCCTTCTGCAGTATACTGCCGGAAATT
dp5 4_group1:1530443-1530770 - TC------------AGTTTTCCAGACAC------CGCGCTAAGACAAGTAGAACACAATGGGAAGTAAGTAGA-----TCGTT-TA-TA------ACTACTGCATATTTG-AA-GGAGTG---CGATTT---TTGT--AAAAGTAAAGTGCCGCTT-----------------------------CG---AGG-GGATC----G--AGCACCGCAC-CCCCCGT-----TGCTCTTTGCTTACGTATACAAAAAA-TG-T--------------CG----------GTG--TGCT---CTTCTTATTGTGTG-------------ATTTGTG------------TGGTCTGCAAGCCACCAATTGAAT-TGAAAGT----T------G-----------AG----------TT---------------------------------TCGC---GTCTAACCACAGCCCTTTCCATTCATT-ATTTGCAGTCAAATTCCTCGAAGTTATTAAACCCTTCTGCAGTATACTGCCGGAAATT
droPer2 scaffold_5:3676205-3676534 + TC------------AGTTTTCCAGACAC------CGCGCTAAGACAAGTAGAACACAATGGGAAGTAAGTAGA-----TCGTT-TA-TA------ACTACTGCATATTTG-AGAAGAGT---GCGATTT---TTGT--AAAAGTAAAGTGCCGCTT-----------------------------CG---AGG-GGATC----G--AGCACCGCACCCCCCCGT-----TGCTCTTTGCTTACGTATACAAAAAA-TG-T--------------CG----------GTG--TGCA---CTTCTTATTGTGTG-------------ATTTGTG------------TGCTCTGCAAGCCACCAATTGAAT-TGAAAGT----T------G-----------AG----------TT---------------------------------TCGC---GTCTAACCACAGCCCTTTCCATTCATT-ATTTGCAGTCAAATTCCTCGAAGTTATTAAACCCTTCTGCAGTATACTGCCGGAAATT
droWil2 scf2_1100000004884:586328-586643 - AAT----TGCATTTAGTT--------TTTCACCGGTTATAAACTCAAATAAATCAGGATGGGAAGTAAGTAATCGTAA---------TA------TTTTATTTATTAATG-G-------------------------AAA-----AAGTGATGTTT-----------------------------TTACAACCCCTCAC-----CTTAA-GCACAC-CCTCCATCAGTCTTCAAGTTGCTTACGTATACAAAAAA-AAAA--------------AA----------ATG--AAAA--ATCTTTTGACATG------------------TGTG------------A--T---------TATAAATAAA-TGCAACAT----A------G-----------AC----------TT--------------------TTACTTTATTTTCCCAT---GTCTAATTAAAATATTGTTTATTG----ATTTGCAGTTAAATTTCTCGAAGTAATCAAACCCTTTTGCAGTATATTACCTGAAATT
droVir3 scaffold_12723:4486655-4486997 - dvi_1671 ATCA---TAAGTTTAGTT--------CCCTGCCGTACGTTACATTAAGTCAAACACAATGGGAAGTAAGTACA-----ACGCC-AA-CAAGT---------TC------------AAGTGCA---ATAC-----GTACCA-----AAGTGCCGGAA---CGCTTGCCAATAAGCGGCGGCCGCATCGGC----------------------AACA--CCCCCGT---------ACTTGCTTACGTATACAAAAAA-GATG--A-ATTTGGGTATTGATGTGCCAGTGCC--TCCG---CCGCTAATTGTGTA-------------AAGTGCA------------GGCTCAA--------------------AA---ACACT-------------------G----------AAACGCGTTCCAATCAGAGCTAACAA-----------------CATAAT-----TGGTTTTCATTCATTCATTTGCAGTCAAATTCCTGGAAGTTATCAAGCCCTTCTGCAGTATACTGCCTGAAATT
droMoj3 scaffold_6500:7571581-7571922 + ATCA---TAAGTTTAGTT--------CCCTGCCGTACGTTACATTAAGTCAATCACAATGGGAAGTAAGTACA-----ACGCC-AA-TAAAT---------TG------------ATCT---GCAATAC---CTACATAA-----AAATACCGCTCAAC--CTTGCCAATAAGCTGCGGCCGCTTCGGC----------------------AACA--CCCCCGT---------ACTTGCTTACGTATACAAAAAAAGATG--ACTTTTGAGAATTTATGTACC--------ACCG---AAGCTATTTGTGCA-------------AAGTGCG------------AGCTATAAAACACA---ATAA----------TACATTGCAA--G-----------C-----------AA---------------------------------AGCT---AACCAAATTA-ATTGTTTTCATTCACCCATTTGCAGTTAAATTCCTAGAAGTTATCAAGCCCTTCTGCAGTATACTGCCAGAAATT
droGri2 scaffold_15126:3441082-3441419 - AACA---GAAGTTTAGTT--------CCCTGCCGTACGTTACATTAAGTCAAACACAATGGGAAGTAAGTATA-----AAATC-AA-AAACG---------TC------------AAAT---ACGATTT---GTGTGTGA-----ACGTGCCGGAAAACCGCATACTAAAAATCAGCGGCCGCCTCGGC----------------------AACA--CCCCCC------TACTACTTGCTTACGTATACAAAAAA-AATC--------------AG----------ATTA-ACCG---TTACTAATTATATT-------------AAGTGCA------------G--T---------ACCAAATAA----AAAAGT----A------CT---------AAGTTATTGCAACAA-----------ACATGACTAATAT------------------TTTAT----TTACTTGTCATTCATTAATTTGCAGTCAAATTCCTGGAAGTCATCAAGCCCTTTTGCAGTATACTGCCGGAAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCA---CCCACTCAGTG--------CCCAGGCTAGC---AACACAAGTCCGGCAAAATGGGAAGTAAGTAAACGTCATCGCCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAGTGCCG------------C-TCGCA--CCCTTGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTCGTTGTGTCCGAA--TCG---AAATCGCA-----------------------------ATTAA-TTGAAAA-TGGCCT------A-----------AG----------AA---------------------------------ACGT---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................A--TCG---AAATCGCA-----------------------------ATTAA-TTG.........................................................................................................................................................................2013.00330000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATACTGCCGGAAATC1813.00301200000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGT...............1912.00200010000000100000
................................................................................................................................................................................................................C-TCGCA--CCCTTGT-----CGCTCAT...............................................................................................................................................................................................................................................................................................................2011.00110000000000000000
................................................................................................................................................................................................................................................TACGTATACAAAAAA-GATT--------------C........................................................................................................................................................................................................................................................................2011.00100000010000000000
...................................................................................................................................................................................................................................................................................................TGCG---CCGCTCGTTGTGTCCG.................................................................................................................................................................................................................................2011.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---AACTAATTCG-GCTGCCT....................................................................1911.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATCAAACCGTTCTGC..................1911.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................AA--TCG---AAATCGCA-----------------------------ATTAA-TTG.........................................................................................................................................................................2111.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGAAGTTATCAAACCGTTCTGC..................2611.00100000000001000000
......................................................................................................................................................................................................................................................TACAAAAAA-GATT--------------CG----------GCG--TG......................................................................................................................................................................................................................................................2011.00100000000000001000
............................CAGGCTAGC---AACACAAGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
........................................AACACAAGTCCGGCAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
........................................................................................................................................................................................................................................................CAAAAAA-GATT--------------CG----------GCG--TGCG---C................................................................................................................................................................................................................................................2111.00100000010000000000
...........................................................................................................TCG-GG--GAGTGCAGCGGTTT---TT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................AACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.................................TAGC---AACACAAGTCCGGCAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCGTTCTGCAGTATACTGCC.......2611.00100010000000000000
........................................................................ACGTCATCGCCA-GACA------TCTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCG-GCTGCCTTAATTCAC............................................................2111.00110000000000000000
...................................................................................................................................................................................................................................................................................................TGCG---CCGCTCGTTGTGTCC..................................................................................................................................................................................................................................1911.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAAA-TGGCCT------A-----------AG----------AA---------------------------------ACGT---AACTAA................................................................................2511.00100000000000100000
................................CTAGC---AACACAAGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGTATACTGCC.......2711.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCGTTCTGCAGTATACTGCC.......2411.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATCAAACCGTTCTGCAG................2111.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTATCAAACCGTTCTGCA.................2311.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTCG-GCTGCCTTAATT...............................................................1911.00100000000000001000
.............................AGGCTAGC---AACACAAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
......................................................................................................................................................................................................................................................TACAAAAAA-GATT--------------CG----------GCG--TGC.....................................................................................................................................................................................................................................................2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTATCAAACCGTTCTGC..................2111.00100010000000000000
..........................................................................................................ATCG-GG--GAGTGCAGCGGTTT---.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---AACTAATTCG-GCTGCC.....................................................................1811.00110000000000000000
..............AGTG--------CCCAGGCTAGC---AACACAAGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCAGTATACTGCC.......1811.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTCTGCAGTATACTG.........1911.00100000001000000000
droSec2
GCCA---CCCACTCAGTG--------CCCAGGCTAGC---AACACAAGTCCGGCAAAATGGGAAGTAAGTAAACGTCATCGCCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAATGCCG------------C-TCGCA--CCCTTGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTCGTTGTGTCCGAA--TCG---AAATCGCA-----------------------------ATTAA-TTGAAAA-TGGCCT------G-----------AG----------AA---------------------------------ACGT---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAGGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................CAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.0080080
.............................................AAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070070
...........................................ACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070070
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGT...............1915.0050050
........................................AACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040040
..........................................CACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020020
...........................................ACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACCGTTCTGCAGT...............1812.0020020
.........................................ACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020020
..............................................AGTCCGGCAAAATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGTATACTGCCGGA....1811.0010010
...................................GC---AACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGGTTATCAAACCGTTC.....................2111.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAACCGTTCTGC..................1811.0010010
................................CTAGC---AACACAAGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................................................................................................TGCAGCGGTTT---TTGTGTG------AAG.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAGGTTATCAAACCGTTC.....................2211.0010001
.........................................ACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGAGGTTATCAAACCGTTCTG...................2711.0010010
...........................................................................................................................................................................................GCAATGCCG------------C-TCGCA--CCCTTG............................................................................................................................................................................................................................................................................................................................2111.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCAGTATACTGCCGG.....2011.0010010
.CCA---CCCACTCAGTG--------CCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAGGTTATCAAACCGTTCTGC..................2511.0010010
....................................C---AACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGAGGTTATCAAACCGTT......................2411.0010010
.................................TAGC---AACACAAGTCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............TCAGTG--------CCCAGGCTAGC---AACACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
................................................TCCGGCAAAATGGGAAGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................................C---AACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................AACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGTATACTGC........2611.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGTATACT..........2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGTTATCAAACCGTTC.....................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAACCGTTCTGCAGTATACTGCCG......2811.0010010
dm3
GCCA---CCCACTCAGTG--------CCCAGACTAGC---AACACAAGTCCGGCAAAATGGGAAGTAAGTAACCGTCATCGCCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAATGCCG------------C-TCGCA--CCCTTGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTCGTTGTGTCCGAA---------AATCGCA-----------------------------ATTAA-TTAAAAA-TGGCCT------G-----------AG----------AA---------------------------------ACGT---AACTAATTCG-GTTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
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fGS/OSS		V092
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ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
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CME-W2		V136
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Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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............................................CAAGTCCGGCAAAATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCCA---CCCACACAGTT--------CCCAGGCTAGC---TACACAAGTCCGGCAAAATGGGAAGTAAGTAACCGTCATCGTCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTG------AAGTGCCGCCC-----------------------------TTGCAATGCCG------------C-TCGCA--CCCCCGT-----TGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---GCGCTCGTTGTGTCCAAA---------AATCGCA-----------------------------ATTAA-TTGAAAA-TACCCT-------------------------------G---------------------------------ACGC---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................ACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050001130
.................................TAGC---TACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0021001000
..........ACACAGTT--------CCCAGGCTAGC---TA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..........ACACAGTT--------CCCAGGCTAGC---TACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..CA---CCCACACAGTT--------CCCAGGCTAGC---T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
................................CTAGC---TACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........ACACAGTT--------CCCAGGCTAGC---T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.............CAGTT--------CCCAGGCTAGC---TACACAAGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGGAAGTTATCAAACCGTTCTGC..................2711.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATCAAACCGTTCTGC..................1911.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCCTGGAAGTTATCAAACCG........................2611.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGAAGTTATCAAACCGTTCTGC..................2811.0010000010
..................................AGC---TACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
............................................CAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........CACAGTT--------CCCAGGCTAGC---TACACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGAAGTTATCAAAC..........................2011.0010010000
........................................TACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTATCAAACCGTTCTGC..................2111.0011000000
...................................GC---TACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
........................................TACACAAGTCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.............................................................................................................................................................................................................................................................................................................CTCGTTGTGTCCAAA---------AATC..................................................................................................................................................................................................................1911.0010000010
...............GTT--------CCCAGGCTAGC---TACACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..........................................................................................................ATCG-GG--GAGTGCAGCGGTTT---TTG....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.........................................ACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.............................AGGCTAGC---TACACAAGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..................................AGC---TACACAAGTCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..CA---CCCACACAGTT--------CCCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..........................CCCAGGCTAGC---TACACAAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
........................................TACACAAGTCCGGCAAAATGGGAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
droYak3
GCCA---CCCACTCAGTT--------CCCAGGCTAGC---TACACAAATCCGGCAAAATGGGAAGTAAGTAACCGTCATCGTCA-GACA------TCTTCCCCAAAATCG-GG--GAGTGCAGCGGTTT---TTGTGTA------AAGTGCCGCCC-----------------------------TTGCAGTGCCG------------C-TCGCA--CCCCCGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCGGCGCCGTTCGTTGTGTCCGAA---------AATCGCA-----------------------------ATTAA-TTGAAAA-TACCCT-------------------G----------AA---------------------------------ACGC---AACTAATTCG-GCTGCCTTAATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCGTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................GC---TACACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.00400010030000
..........................................CACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00400000040000
........................................TACACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300000030000
....................................C---TACACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300000030000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATCAAACCGTTCTGC..................1912.00202000000000
..................................AGC---TACACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000
..............................GGCTAGC---TACACAAATCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00201100000000
....................................C---TACACAAATCCGGCAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
...........................................ACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
...............GTT--------CCCAGGCTAGC---TACACAAATCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
........................................TACACAAATCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................AA-GATT--------------CG----------GCG--TGCGGCGCCGTT............................................................................................................................................................................................................................................2311.00100100000000
..................................AGC---TACACAAATCCGGCAAAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAGTTATCAAACCGTTCTGC..................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCTGGAAGTTATCAAACC.........................2211.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCGTTCTGCAGTATACTGCC.......2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCCTGGAAGTTATCAAACCGTT......................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTAATTCACT-ATTTGCAG..................................................2111.00100100000000
.................T--------CCCAGGCTAGC---TACACAAATCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCTGGAAGTTATCAAACCGTTCTGC..................2911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGAAGTTATCAAACC.........................1911.00100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGTTCTGCAGTATACTGCC.......2311.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGAAGTTATCAAACCGTTCTGC..................2611.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGAAGTTATCAAACCGTTCTGC..................2811.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATACTGCCGGAAATC1811.00100100000000
..........................CCCAGGCTAGC---TACACAAATCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
................................CTAGC---TACACAAATCCGGCAAAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCCTGGAAGTTATC..............................1911.00100000010000
...............................................................................................................................................................................................TGCCG------------C-TCGCA--CCCCCGT-----CGCTC.................................................................................................................................................................................................................................................................................................................2311.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGAAGTTATCAAACCGTT......................2211.00100000010000
..........................................................................................................................................................................................TGCAGTGCCG------------C-TCGCA--CCCC..............................................................................................................................................................................................................................................................................................................................2011.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAACCGTTCTGCAGT...............2111.00100001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTATCAAACCGTTCTGCAGTAT.............2611.00101000000000
.............CAGTT--------CCCAGGCTAGC---TACACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.................T--------CCCAGGCTAGC---TACACAAATCCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..........................................CACAAATCCGGCAAAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................AAAA-GATT--------------CG----------GCG--TGCGGCGCC...............................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGGAAGTTATCAAACCGTTC.....................2511.00100000010000
droEug1
GCCA---CCCACTCATAT--------CCCAGGCGAGCAGTGACACAAGTCCGGAAACATGGGGAGTAAGTAGA-----ACGCCA-GACA------TC----CTAAAATCACCA--AAGTGCAGTGGTTT---CTGTGTGA-----AAGTGCCGCCC-----------------------------TGGCGATGCCG------------C-TCGCA--CCCCCGT-----TGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CC--TCGTTGTGACCGAA--------AAATTGCA-----------------------------ATTAAA-TGCAAAG-CCTCT-------------------A----------GA---------------------------------ACGCAGTGCCTAATGCA-GTTCTTTCCATTCACT-TTTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCAGAAATCSizeHit CountTotal NormTotal
No Reads
droBia1
GCCA---CCCACCCAGTT--------CCCAGGCGAGCGCTAGCACAAGTCCGGCAAAATGGGAAGTAAGTAGA-----ACGGC-CG-CAGTC---------TGCGGCTCC--G--GAGTGCAGCGGTTT----TGTGTGA-----AAGTGCCGCCC-----------------------------CTGCGATGCCGCTC----TCTCTC-TCGCA--CC-CCGT-----CGCTCGCTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--AAC-----------------CCGAAAACCGAGAAAACTGCAATTG----------------------CTGGTTG-C-CAAAGAG---TCT------G-----------CA----------TC---------------------------------GCGT---GTCTAATGCC-TCCGTTTTCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotal
No Reads
droTak1
GCCC--------------------------------CGCTAGCACAAGTCCGGCAAAATGGGAAGTAAGTAGA-----ACGGCA-GACA------GAATCTCCACAATTC-GG--GAGTGCAGCGGTTT---GTGTGTGA-----CAGTGCCGCCC-----------------------------CTGCGATGCCGCTC----TCTCGC-TCGCA--CCCCCGT-----CGCTCGTTGCTTACGTATACAAAAAA-GATT--------------CG----------GC-------------TTCGGCGTGCCCGAA--------AAACTGCAATTGGAAATGAAG----AA------------GAA-CGGAAAAG-TCCCT------G-----------------------AAAC-------------------------------GCGT---TTCTAATGCC-ATTGTTTCCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotal
No Reads
droEle1
GCTC---TTTACTC-------------------GAGCGCTAACACAAGTCCAGCAAAATGGGAAGTAAGTAAA-----GCGCA-GC-CAAGT---------CGAAAATCCCGG--GAGTGCAGCGGTTT---TTGTGTGA-----AAGTGCCGCCC-----------------------------T-GCGATGCCGATTCCGATTCCGC-TCGCA--CCCCCGT-----CGCTCATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCA--TGCG---CCGCTGAGTGTGCCTGAA--------AAACTGCA-----------------------------ACTAAA-TGAAAAGT----G------C-----------GA----------AA---------------------------------ACAC---GTCTAATTCA-ATGCTTTTCATTCACT-ATTTGCAGTCAAGTTTCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotal
No Reads
droRho1
GCTC---CCCACTCAGTT--------CCCAGGCGAGCGCTAACACAAGTCCAGCAAAATGGGAAGTAAGTAAA-----GCC-CA-GCCATGT---------CGAAAATCCCGG--GAGTGCAGCGGTTT----TGTGTGA-----AAGTGCCGCCC-----------------------------T-GCGATGCCGATT----C--CGC-TCGCA--CCCCCGT-----CGCTTATTGCTTACGTATACAAAAAA-GATT--------------CG----------GCG--TGCG---CCGCTGACAGTGGCTAA---------AAACTGCA-----------------------------ATTAAA-TAAAAAGT----C------C-----------GC----------TA---------------------------------ACGC---GTCTAATGCA-ATACTTTTCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTAATCAAACCCTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotal
No Reads
droFic1
GAT----CCCACTCAGTG--------CCCAAGCGAGCGCTAAAACAAGACCAGCAAAATGGGAAGTAAGTAAA-----TCGCT-AG-CGGGC---------CGAGAATCCCGG--GAGTAAAGCGGTT----GTGCGTGA-----AAGTGCCGCCC-----------------------------CTGCGATGCCG------------C-TTGCA--CCCCGGT-----CGCCCATTGCTTACGTATACAAAAAA-GACT--------------CG----------GCG--TGCT---TCGCTGACTGTGCCCGAA--------AAACTGCA-----------------------------GTTAAA-TGAAAAGT----C------C-----------AA----------TA---------------------------------ACGC---GTCTAATGCA-ATGCTCTTCATTCACT-ATTTGCAGTCAAGTTCCTGGAAGTTATCAAACCCTTCTGCAGTATACTGCCGGAAATCSizeHit CountTotal NormTotal
No Reads
droKik1
AGT----CCCAC-----------------------ACACTAAATCAGGAAAAACACAATGGGAAGTAAGTAAA-----TCGAC-GA-AGAGC------AGTGGC-AATCGGGA--AAGAGCAGCAGAAAAAGCAGTGAAA-----AAGTGCCGCCT-----------------------------TTACAATGCCG------------C-TTGCA--CCCCCGT-----CACTCTTTGCTTACGTATACAAAAAG-ATTT--------------CG----------GCG--TGCG---CCCTTAATTGTGCCTAAA-----------CCGT--------------------------------------------TGGCTG------GTGAAAGAAAA-CA----------AA---------------------------------GCCC---GTCTAATTCAAGTTCATTTCATCCACC-ATTTGCAGTAAAATTCCTGGAAGTAATTAAACCCTTCTGCAGTATACTGCCGGAAATTSizeHit CountTotal NormTotal
No Reads
droAna3
GGGACTCCTCCCTCGGCA--------CCCA------CGTCAACACAGATCCACCAAGATGGGAAGTAAGTAGA-----CTGCG-GC-TC---ATAA-----CTAAAATCGGGA--AAGTGCAGCAAA---------GTC------GAGTGCCGCCT-----------------------------TTG----GCCG------------C-----------CCGA-----CGC-CTTTGCTTACGTATACAAAAAAAAATTCGA-TTC-------CG----------CCG--TGTT---CCACCAATAGTG--------------------CA-----------------------------CT-------GAT---GGC-T-GAAACCT---------------------------------------GGCTAGCAATGG------ATCC---GTCTAATTCC-TGCCTTTCCATTCACT-TTTCGCAGTCAAATTCCTGGAAGTCATCAAGCCTTTCTGCAGTATACTGCCGGAAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCAAGCCTTTCTGC..................1914.004040000
............................CA------CGTCAACACAGATCCACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCTGGAAGTCATCAAGCCTTT......................2512.002011000
.........................................ACACAGATCCACCAAGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002011000
..GACTCCTCCCTCGGCA--------CCCA------CGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAAGCCTTTCTGCAGT...............1912.002011000
...........................................ACAGATCCACCAAGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002002000
......................................................................................................................................................................................................................................................................................................T---CCACCAATAGTG--------------------CA-----------------------------CT-------GAT---GGC-T-GA...........................................................................................................................................................2612.002000002
........................................AACACAGATCCACCAAGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................................ACAGATCCACCAAGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..GACTCCTCCCTCGGCA--------CCCA------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................A---------GTC------GAGTGCCGCCT-----------------------------TTG----GCC........................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAAGTCATCAAGCCTT.......................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCATCAAGCCTTTCTGC..................2011.001010000
.......................................CAACACAGATCCACCAAGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........CTCGGCA--------CCCA------CGTCAACACAGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGGAAGTCATCAAGCCC........................2111.001010000
.............CGGCA--------CCCA------CGTCAACACAGATCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................CAGATCCACCAAGATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..GACTCCTCCCTCGGCA--------CCCA------CGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTCCTGGAAGTCATCAAGCCTT.......................2711.001100000
.GGACTCCTCCCTCGGCA--------CCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTCCTGGAAGTCATCAAGCCTTT......................2811.001000010
....................................CGTCAACACAGATCCACCAAGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCCTTTCTGCAGC...............1811.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATACTGCCGGAAATT1811.001010000
.....................................GTCAACACAGATCCACCAAGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................................CACAGATCCACCAAGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAAGCCTTTCTGC..................1811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAAGCCTTTCTGCAGTATACTGCC.......2911.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGAAGTCATCAAGCC.........................2111.001010000
droBip1
GGGA---CTC-CTCGGCT--------CCCA------CGTCAACACAGATCCACCAAGATGGGAAGTAAGTAGA-----CTGCG-GG-CT---ATAA-----CTAATATCGGGA--AAGTGCAGCAAA---------GTC------GAGTGCCGCCT-----------------------------TGG----GCCG-----------------------CCCGT-----CGC-CTTTGCTTACGTATACAAAAAA-T--TCGA-TT--------CC----------GCC-GTGTG---CCTATAATAGTGCCCTGA--------AAGCTGGA-----------------------------TC------------------------CT---------------------------------------GGCTAACAATGG------ATGC---ATCTAATTCC-TACCTTTTCAATCACT-TTTTGCAGTCAAATTCCTGGAAGTCATCAAACCCTTCTGCAGTATACTGCCGGAAATTSizeHit CountTotal NormTotal
No Reads
dp5
TC------------AGTTTTCCAGACAC------CGCGCTAAGACAAGTAGAACACAATGGGAAGTAAGTAGA-----TCGTT-TA-TA------ACTACTGCATATTTG-AA-GGAGTG---CGATTT---TTGT--AAAAGTAAAGTGCCGCTT-----------------------------CG---AGG-GGATC----G--AGCACCGCAC-CCCCCGT-----TGCTCTTTGCTTACGTATACAAAAAA-TG-T--------------CG----------GTG--TGCT---CTTCTTATTGTGTG-------------ATTTGTG------------TGGTCTGCAAGCCACCAATTGAAT-TGAAAGT----T------G-----------AG----------TT---------------------------------TCGC---GTCTAACCACAGCCCTTTCCATTCATT-ATTTGCAGTCAAATTCCTCGAAGTTATTAAACCCTTCTGCAGTATACTGCCGGAAATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................CAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050200300000
.....................................GCTAAGACAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040200100001
.........................CAC------CGCGCTAAGACAAGTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................AAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000300000
.C------------AGTTTTCCAGACAC------CGCGCTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020100100000
.........................CAC------CGCGCTAAGACAAGTAGAACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAAGTTATTAAACCCTTCTGC..................2412.0020020000000
.........................CAC------CGCGCTAAGACAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
.C------------AGTTTTCCAGACAC------CGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020010100000
...................TCCAGACAC------CGCGCTAAGACAAGTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000200
.C------------AGTTTTCCAGACAC------CGCGCTAAGACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100000
.........................................................................................................................................................................................................................................................................................................................................................................ATTGAAT-TGAAAGT----T------G-----------AG----------TT---------------------------------T............................................................................................2111.0010000001000
TC------------AGTTTTCCAGACAC------CGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................AAAAGTAAAGTGCCGCTT-----------------------------CG---AGG-G........................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................TCTGCAAGCCACCAATTGAAT-TGAA......................................................................................................................................................................2511.0010100000000
.............................................AAGTAGAACACAATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.....................................GCTAAGACAAGTAGAACACAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
.........................CAC------CGCGCTAAGACAAGTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
.......................GACAC------CGCGCTAAGACAAGTAGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCTTCTGCAGTATACTGCCG......2311.0010100000000
..............AGTTTTCCAGACAC------CGCGCTAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
......................................CTAAGACAAGTAGAACACAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.....................................GCTAAGACAAGTAGAACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................CGT-----TGCTCTTTGCTTACGTAT....................................................................................................................................................................................................................................................................................................2111.0010100000000
........................ACAC------CGCGCTAAGACAAGTAGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.....................................GCTAAGACAAGTAGAACACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
......................................................................................................................................................................................................C----G--AGCACCGCAC-CCCCCGT-----TG....................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................ACAC------CGCGCTAAGACAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............GTTTTCCAGACAC------CGCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..........................................GACAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
..........................................GACAAGTAGAACACAATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
.....................................GCTAAGACAAGTAGAACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............GTTTTCCAGACAC------CGCGCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................AAAGT----T------G-----------AG----------TT---------------------------------TCGC---GTCTA.................................................................................2011.0010000001000
..............................................AGTAGAACACAATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020000100001
......................................CTAAGACAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................CGCGCTAAGACAAGTAGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
..............AGTTTTCCAGACAC------CGCGCTAAGACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100000
.................TTTCCAGACAC------CGCGCTAAGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................CGCGCTAAGACAAGTAGAACACAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................TTGAAT-TGAAAGT----T------G-----------AG----------TT---------------------------------TC...........................................................................................2111.0010100000000
........................................AAGACAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
.................TTTCCAGACAC------CGCGCTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TC------------AGTTTTCCAGACAC------CGCGCTAAGACAAGTAGAACACAATGGGAAGTAAGTAGA-----TCGTT-TA-TA------ACTACTGCATATTTG-AGAAGAGT---GCGATTT---TTGT--AAAAGTAAAGTGCCGCTT-----------------------------CG---AGG-GGATC----G--AGCACCGCACCCCCCCGT-----TGCTCTTTGCTTACGTATACAAAAAA-TG-T--------------CG----------GTG--TGCA---CTTCTTATTGTGTG-------------ATTTGTG------------TGCTCTGCAAGCCACCAATTGAAT-TGAAAGT----T------G-----------AG----------TT---------------------------------TCGC---GTCTAACCACAGCCCTTTCCATTCATT-ATTTGCAGTCAAATTCCTCGAAGTTATTAAACCCTTCTGCAGTATACTGCCGGAAATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................CAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.006402000
.............................................AAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.006600000
.........................CAC------CGCGCTAAGACAAGTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.005500000
.....................................GCTAAGACAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
.........................CAC------CGCGCTAAGACAAGTAGAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003210000
.....................................GCTAAGACAAGTAGAACACAATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
.....................................GCTAAGACAAGTAGAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATACTGCCGGAAATT1813.003300000
.....................................GCTAAGACAAGTAGAACACAATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
.............................................AAGTAGAACACAATGGGAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.....................................GCTAAGACAAGTAGAACACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
.........................CAC------CGCGCTAAGACAAGTAGAACACAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.........................CAC------CGCGCTAAGACAAGTAGAACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
........................................AAGACAAGTAGAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
.........................................AGACAAGTAGAACACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.........................CAC------CGCGCTAAGACAAGTAGAACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
......................AGACAC------CGCGCTAAGACAAGTAGAACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...............................................GTAGAACACAATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.503300000
.................................................................................................................AAGAGT---GCGATTT---TTGT--AAAAA............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...................................................................................................................................................................................................................................................................................................................GTGTG-------------ATTTGTG------------TGCTCTGC...........................................................................................................................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTATACTGCCGGAAA..1911.001000010
....................................CGCTAAGACAAGTAGAACACAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................CTAAGACAAGTAGAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
....................................CGCTAAGACAAGTAGAACACAATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............................................CAAGTAGAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................................AAGTAGAACACAATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................GA-----TCGTT-TA-TA------ACTACTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTAAACCCTTCTGC..................1811.001100000
...................................GCGCTAAGACAAGTAGAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................AAGTAGAACACAATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...........................C------CGCGCTAAGACAAGTAGAACACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................GACAAGTAGAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTTTCCATTCATT-ATTTGCA...................................................2411.001010000
.......................................TAAGACAAGTAGAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................CAAGTAGAACACAATGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................................................................................................................AGTGCCGCTT-----------------------------CG---AGG-GGATC----G--AG...........................................................................................................................................................................................................................................................................................................................................2311.001000001
..............................................................................................................................TTT---TTGT--AAAAGTAAAGTGCC...................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................GTAGAACACAATGGGAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.672200000
droWil2
AAT----TGCATTTAGTT--------TTTCACCGGTTATAAACTCAAATAAATCAGGATGGGAAGTAAGTAATCGTAA---------TA------TTTTATTTATTAATG-G-------------------------AAA-----AAGTGATGTTT-----------------------------TTACAACCCCTCAC-----CTTAA-GCACAC-CCTCCATCAGTCTTCAAGTTGCTTACGTATACAAAAAA-AAAA--------------AA----------ATG--AAAA--ATCTTTTGACATG------------------TGTG------------A--T---------TATAAATAAA-TGCAACAT----A------G-----------AC----------TT--------------------TTACTTTATTTTCCCAT---GTCTAATTAAAATATTGTTTATTG----ATTTGCAGTTAAATTTCTCGAAGTAATCAAACCCTTTTGCAGTATATTACCTGAAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCTCGAAGTAATCAAACCCTTT.....................28110.0010010000
.............................................AAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCTCGAAGTAATCAAACCCTT......................2719.00909000
.....................................ATAAACTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.00800170
....................................TATAAACTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.00600060
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAACCCTTTTGCAGTATATTACC.......2815.00505000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCTCGAAGTAATCAAACCCT.......................2615.00505000
.AT----TGCATTTAGTT--------TTTCACCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.00500050
.......................................AAACTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00400040
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCTCGAAGTAATCAAACCC........................2514.00404000
......................................TAAACTCAAATAAATCAGGATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00404000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGTAATCAAACCCTTTTGCAG................2814.00404000
..........ATTTAGTT--------TTTCACCGGTTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300030
......................................TAAACTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300030
............................................CAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300030
.AT----TGCATTTAGTT--------TTTCACCGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300030
...........................................TCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
..........................................CTCAAATAAATCAGGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
.AT----TGCATTTAGTT--------TTTCACCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAACCCTTTTGCAGTATAT...........2412.00202000
..............................................AATAAATCAGGATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
AAT----TGCATTTAGTT--------TTTCACCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200020
..........................TTTCACCGGTTATAAACTCAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
...........................................TCAAATAAATCAGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200110
.......................................AAACTCAAATAAATCAGGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAAGTAATCAAACCCTTTTGCAG................2712.00202000
.........CATTTAGTT--------TTTCACCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCGAAGTAATCAAACCCTTT.....................2712.00202000
..........................................................................................................AATG-G-------------------------AAA-----AAGTGATGTTT-----------------------------TT................................................................................................................................................................................................................................................................................................................................................................2112.00200002
............................................CAAATAAATCAGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCGAAGTAATCAAACCCT.......................2511.00101000
...........TTTAGTT--------TTTCACCGGTTATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....................................ATAAACTCAAATAAATCAGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGCAGTATATTACCT......1911.00100010
..........................TTTCACCGGTTATAAACTCAAATAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
..........................................CTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................................AACTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
AAT----TGCATTTAGTT--------TTTCACCGGTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
....................................TATAAACTCAAATAAATCAGGATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
..........................TTTCACCGGTTATAAACTCAAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................ACTCAAATAAATCAGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
........GCATTTAGTT--------TTTCACCGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................TAAACTCAAATAAATCAGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................ACTCAAATAAATCAGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAACCCTTTTGCAGTATA............2311.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAATCAAACCCTTTTGCAGT...............2211.00100010
AAT----TGCATTTAGTT--------TTTCACCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.............................................AAATAAATCAGGATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
..........................TTTCACCGGTTATAAACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........ATTTAGTT--------TTTCACCGGTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................AAATCAGGATGGGAAGTAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......TGCATTTAGTT--------TTTCACCGGTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTAATCAAACCCTTTTGCAGTA..............2611.00100010
..........ATTTAGTT--------TTTCACCGGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........ATTTAGTT--------TTTCACCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................TTCACCGGTTATAAACTCAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
........................................................GATGGGAAGTAAGTAATCGTAA---------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATTTCTCGAAGTAATCAAACCCTTT.....................2911.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGAAGTAATCAAACCCTTTTGCAGTA..............2911.00101000
.....................................ATAAACTCAAATAAATCAGGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................AAACTCAAATAAATCAGGATGGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
......................................TAAACTCAAATAAATCAGGATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
......................................................AGGATGGGAAGTAAGTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAAGTAATCAAACCCTT......................2011.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCGAAGTAATCAAACCCTTTTGC..................2711.00101000
.AT----TGCATTTAGTT--------TTTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAAGTAATCAAACCCTTTTGCA.................2511.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAACCCTTTTGCAGTATATTACCT......2911.00101000
...........................................................................................................................................................................................................................................................................................................CTTTTGACATG------------------TGTG------------A--T---------TATAAATA..............................................................................................................................................................................2511.00100010
AAT----TGCATTTAGTT--------TTTCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAACCCTTTTGCAGT...............1911.00100010
.....................................ATAAACTCAAATAAATCAGGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAACCCTTTTGCAGTA..............2011.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAACCCTTTTGCAGTATATTAC........2711.00101000
droVir3
ATCA---TAAGTTTAGTT--------CCCTGCCGTACGTTACATTAAGTCAAACACAATGGGAAGTAAGTACA-----ACGCC-AA-CAAGT---------TC------------AAGTGCA---ATAC-----GTACCA-----AAGTGCCGGAA---CGCTTGCCAATAAGCGGCGGCCGCATCGGC----------------------AACA--CCCCCGT---------ACTTGCTTACGTATACAAAAAA-GATG--A-ATTTGGGTATTGATGTGCCAGTGCC--TCCG---CCGCTAATTGTGTA-------------AAGTGCA------------GGCTCAA--------------------AA---ACACT-------------------G----------AAACGCGTTCCAATCAGAGCTAACAA-----------------CATAAT-----TGGTTTTCATTCATTCATTTGCAGTCAAATTCCTGGAAGTTATCAAGCCCTTCTGCAGTATACTGCCTGAAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........GTTTAGTT--------CCCTGCCGTACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000100000000000000000000000000000000000000000000000
.........................................CATTAAGTCAAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000100000000000000000000000000000000000000000000000000000001000
..............AGTT--------CCCTGCCGTACGTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000100000000000000000000000000000000000000000001000
..........GTTTAGTT--------CCCTGCCGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000002
.........AGTTTAGTT--------CCCTGCCGTACGTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGTTATCAAGCCCTTC.....................2012.002000000000000000000000000000000000000000000000000000000000000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGCCCTTCTGCAGT...............2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCCTGGAAGTTATCAA............................2111.001000000000000000001000000000000000000000000000000000000000000000
.........................................CATTAAGTCAAACACAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAAGCCCTTCTGCAGTATACT..........2411.001000000000000000001000000000000000000000000000000000000000000000
.....................................GTTACATTAAGTCAAACACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........GTTTAGTT--------CCCTGCCGTACGTTACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.........................................CATTAAGTCAAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........AAGTTTAGTT--------CCCTGCCGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGAAGTTATCAAGCCCTTCTGC..................2811.001000100000000000000000000000000000000000000000000000000000000000
..........GTTTAGTT--------CCCTGCCGTACGTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........TTTAGTT--------CCCTGCCGTACGTTACATTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
.......TAAGTTTAGTT--------CCCTGCCGTACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.......................................TACATTAAGTCAAACACAATGGGAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
ATCA---TAAGTTTAGTT--------CCCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAGCCCTTCTGCAGT...............2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AA---ACACT-------------------G----------AAACGCGTTCCA....................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGTCAAATTCCTG.......................................1911.001000000000000000001000000000000000000000000000000000000000000000
.........AGTTTAGTT--------CCCTGCCGTACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAGTTATCAAGCCCTTCTGC..................2411.001000000000000000100000000000000000000000000000000000000000000000
...........TTTAGTT--------CCCTGCCGTACGTTACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................ATTGTGTA-------------AAGTGCA------------GGCTCA.............................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
ATCA---TAAGTTTAGTT--------CCCTGCCGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTATCAAGCCCTTCTGC..................1911.001000100000000000000000000000000000000000000000000000000000000000
..............AGTT--------CCCTGCCGTACGTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
...........................CCTGCCGTACGTTACATTAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........AGTTTAGTT--------CCCTGCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...............GTT--------CCCTGCCGTACGTTACATTAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
...A---TAAGTTTAGTT--------CCCTGCCGTACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
..CA---TAAGTTTAGTT--------CCCTGCCGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAGCCCTTCTGC..................1811.001000000000000000000000000000000010000000000000000000000000000000
.............................................AAGTCAAACACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000000000000000000000000000000000000001000
droMoj3
ATCA---TAAGTTTAGTT--------CCCTGCCGTACGTTACATTAAGTCAATCACAATGGGAAGTAAGTACA-----ACGCC-AA-TAAAT---------TG------------ATCT---GCAATAC---CTACATAA-----AAATACCGCTCAAC--CTTGCCAATAAGCTGCGGCCGCTTCGGC----------------------AACA--CCCCCGT---------ACTTGCTTACGTATACAAAAAAAGATG--ACTTTTGAGAATTTATGTACC--------ACCG---AAGCTATTTGTGCA-------------AAGTGCG------------AGCTATAAAACACA---ATAA----------TACATTGCAA--G-----------C-----------AA---------------------------------AGCT---AACCAAATTA-ATTGTTTTCATTCACCCATTTGCAGTTAAATTCCTAGAAGTTATCAAGCCCTTCTGCAGTATACTGCCAGAAATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...A---TAAGTTTAGTT--------CCCTGCCGTACGTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTAGAAGTTATCAAGCCCTT......................2411.001100000
...........................................TTAAGTCAATCACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................CATTAAGTCAATCACAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
ATCA---TAAGTTTAGTT--------CCCTGCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................ATTAAGTCAATCACAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATTCCTAGAAGTTATC..............................2111.001000010
.....................................GTTACATTAAGTCAATCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTTCTGCAGTATACT..........1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTAGAAGTTATCAAGCCCTTCTGC..................2811.001100000
ATCA---TAAGTTTAGTT--------CCCTGCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................CATTAAGTCAATCACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............GTT--------CCCTGCCGTACGTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCATTCACCCATTTGCAG..................................................2111.001010000
ATCA---TAAGTTTAGTT--------CCCTGCCGTACGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGTTATCAAGCCCTTC.....................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCATTCACCCATTTGC....................................................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGAAGTTATCAAGCCCTT......................2111.001100000
..........GTTTAGTT--------CCCTGCCGTACGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.....................................GTTACATTAAGTCAATCACAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCACCCATTTGCAG..................................................1811.001000010
.........................................................................................................................................................................................................................................................AAAAAAAGATG--ACTTTTGAGAATTT.......................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAGTTATCAAGCCCT.......................1911.001100000
...A---TAAGTTTAGTT--------CCCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............GTT--------CCCTGCCGTACGTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droGri2
AACA---GAAGTTTAGTT--------CCCTGCCGTACGTTACATTAAGTCAAACACAATGGGAAGTAAGTATA-----AAATC-AA-AAACG---------TC------------AAAT---ACGATTT---GTGTGTGA-----ACGTGCCGGAAAACCGCATACTAAAAATCAGCGGCCGCCTCGGC----------------------AACA--CCCCCC------TACTACTTGCTTACGTATACAAAAAA-AATC--------------AG----------ATTA-ACCG---TTACTAATTATATT-------------AAGTGCA------------G--T---------ACCAAATAA----AAAAGT----A------CT---------AAGTTATTGCAACAA-----------ACATGACTAATAT------------------TTTAT----TTACTTGTCATTCATTAATTTGCAGTCAAATTCCTGGAAGTCATCAAGCCCTTTTGCAGTATACTGCCGGAAATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......GAAGTTTAGTT--------CCCTGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.ACA---GAAGTTTAGTT--------CCCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.ACA---GAAGTTTAGTT--------CCCTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 05:22 PM