ID:

dsi_27387

Coordinate:

2r:5771699-5771857 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-17.5	-17.4	-17.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCCTCAAATCCGCGTCACCGTCTCCATTGTCCACCAGCAGAGGAAGAAACGTAAGTTAGGTAGGAGGAATCCAGAATGTCGAACCATGCAAAATTTATTATTAACTAAATAATGACAATAGTTTTTGCTATAAAAATTGCTTTTATATAACATAACTTGAGCTTACAAATATTAAAATGCCTATTATTAATTTTTAAAGCCTCATTAATTGTCTTGATTTCGCCATAAGGCCATCTCAGCATAATGCAAATGTAGTAAA ************************************************....((((.(((((((.(((......(((........)))....((((((((.....))))))))..(((((....)))))....))).))))))).))))......(((((((..(((.((((((((....))).))))).))).))).)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR902008 ovaries
................................................................................................................................................ATATAACATAACTTGAGCTTA..............................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................GACCACCAGCAGAGGA.......................................................................................................................................................................................................................	16	1	3	0.33	1	0	1	0	0	0
..........................................GAAGATACGTAGGTTAGGTT.....................................................................................................................................................................................................	20	3	4	0.25	1	0	0	1	0	0
..............................CCACCAGCAGAGGAGAAAA..................................................................................................................................................................................................................	19	2	5	0.20	1	0	1	0	0	0
........................TATTGTCCACCAGGAGTGGA.......................................................................................................................................................................................................................	20	3	6	0.17	1	0	0	0	1	0
................................................................................................................................................ATAGAACATAACTTGAGA.................................................................................................	18	2	6	0.17	1	0	0	1	0	0
...................................................TGAGCTGGGTAGGAGGAATC............................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	1
............................GACCACCAGCAGAGG........................................................................................................................................................................................................................	15	1	16	0.06	1	0	1	0	0	0
..................................................................................................................................................................................................................................AAGGCCAGCTCAGCA..................	15	1	20	0.05	1	0	0	0	1	0

Anti-sense strand reads

AGGAGTTTAGGCGCAGTGGCAGAGGTAACAGGTGGTCGTCTCCTTCTTTGCATTCAATCCATCCTCCTTAGGTCTTACAGCTTGGTACGTTTTAAATAATAATTGATTTATTACTGTTATCAAAAACGATATTTTTAACGAAAATATATTGTATTGAACTCGAATGTTTATAATTTTACGGATAATAATTAAAAATTTCGGAGTAATTAACAGAACTAAAGCGGTATTCCGGTAGAGTCGTATTACGTTTACATCATTT ************************************************....((((.(((((((.(((......(((........)))....((((((((.....))))))))..(((((....)))))....))).))))))).))))......(((((((..(((.((((((((....))).))))).))).))).)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs	M023 head	GSM343915 embryo
.....................................................................AGGTCTTACAGCTTG...............................................................................................................................................................................	15	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................AAAAATCTCGGAGTAAT....................................................	17	1	2	0.50	1	0	1	0	0	0	0	0	0
............................................................................................................................................................AACTCGAGGGTTTATAATGTT..................................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0	0
..........................................................................TTAAAGCTTGGTACGT.........................................................................................................................................................................	16	1	5	0.20	1	1	0	0	0	0	0	0	0
.......................................................................................................TGAGTTAAGACTGTTATC..........................................................................................................................................	18	3	20	0.20	4	0	0	0	1	2	0	1	0
...........................................................................TAAAGCTTGGTACGT.........................................................................................................................................................................	15	1	13	0.15	2	0	0	2	0	0	0	0	0
........................................................................................................................................................................................................................................TAGAGTCGTAGTACG............	15	1	7	0.14	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................TCCGGTAGGGTCATATT...............	17	2	9	0.11	1	0	0	0	1	0	0	0	0
......................................................................................................TTGATTTACTACTGTT.............................................................................................................................................	16	1	10	0.10	1	0	0	0	0	0	1	0	0
..........................................................................TTAAAGCTTGGTACG..........................................................................................................................................................................	15	1	12	0.08	1	0	0	1	0	0	0	0	0
............................................TCTTTGCATTCCATCTATT....................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/23/2015 at 09:48 PM