ID:

dsi_27381

 Coordinate:

3l:11511843-11511992 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.7 -15.6 -14.8 -14.7

Flybase annnotation

CDS [3l_11511670_11511842_-]; exon [3l_11511512_11511842_-]; intron [3l_11511843_11512586_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATTCCGGGCCTGGAGCGACTTGGTCACAGGGCCGAGCAGCGGTTCAGCTATTAGGAGTTGATACTATGCCTGTGTTTTGATTTCATTTAACAGTGCTGAGCCAGTGGGAAAGATTGTGTGCATCAGGTCTTGCTAAGAACACTTGTACGCCCTAAAATGTTGCACTTATATTGATATTTCTTCATACTTTGCATCTAGGTTGGCAGTATAGCGTTGGCTTCATCAATGAGGAAATGATCGCCGCCCAC
****************************************************..((..............(((((((.......((.(((..((.((......)).))..)))))......)))).)))..............))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................................................................AATGAGGAAATGATCGCCGCCC.. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CATCAATGAGGAAATGATCGCCGCCC.. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAAGGTTGGCAGTATAGCGTTGGCTT............................ 26 2 1 2.00 2 0 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGGTTGGCAGTATAGCGTTGGCT............................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAAGGTTGGCAGGATAGCGTTGGCTT............................ 26 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................CGAAGGTTGGCAGTATAGCGTT................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAATGAGGAAATGATCGCCGCC... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCAATGAGGAAATGATCGCCGCCC.. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................TCATCAATGAGGAAATGATCGCCGC.... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AGGTTGGCAGTATAGCGTTGGCTT............................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....CCGGGCCTGGAGCGACTTGGTC............................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................TTAGGAGTTGATACTATGCCT................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................ACTTGGTCACAGGGCCGA..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................CAGGTCTTGCTAAGAACACT......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATGAGGAAATGATCGCCGCC... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGGAAATGATCGCCGCCCAC 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TATAGCGTTGGCTTCATCAATGAGGA................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................AGTGGGAAAGATTGTGTGCATC............................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGCAGTATAGCGTTGGCTT............................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................CTAAGAACACTTGTACGCCCT............................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGAAGGTTGGCAGTATAGCGTTGGCTT............................ 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACGAAGGTTGGCAGTATAGCGTT................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................ACTTGGTCACTGGGCCGAA.................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................GGCTTCATCAATGTGG................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
......................................................................CCTCTGTTCTGATTTCATT................................................................................................................................................................. 19 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
GCATCCCGGGGCTGGAGC........................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0
.............................................................GATACTGTGCCTGTGTT............................................................................................................................................................................ 17 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................AGTATACCGTCGGCT............................. 15 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................TGAGCCACTGGGAAA......................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGTAAGGCCCGGACCTCGCTGAACCAGTGTCCCGGCTCGTCGCCAAGTCGATAATCCTCAACTATGATACGGACACAAAACTAAAGTAAATTGTCACGACTCGGTCACCCTTTCTAACACACGTAGTCCAGAACGATTCTTGTGAACATGCGGGATTTTACAACGTGAATATAACTATAAAGAAGTATGAAACGTAGATCCAACCGTCATATCGCAACCGAAGTAGTTACTCCTTTACTAGCGGCGGGTG
*********************************************************************************************************..((..............(((((((.......((.(((..((.((......)).))..)))))......)))).)))..............))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body
................................................................................................................................................................................................CGTAGGTCCAACTGGCATAT...................................... 20 3 1 2.00 2 2 0 0 0 0
................................CGGCTCGTCGCCAAGTCGA....................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................ATGAGGGGTTTTACAAGGTGA.................................................................................. 21 3 5 0.20 1 0 0 1 0 0
............................................AAGGCGACAATACTCAACT........................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 1 0
..............................................................................................................................................................CAAAACGTGAATATATCTAT........................................................................ 20 3 20 0.05 1 0 0 0 0 1
.........................................................................................................................CGTAGTCTAGAAGGAT................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:23 AM