ID:

dsi_27380

 Coordinate:

3l:8099747-8099896 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.0 -15.4 -15.3 -15.3

Flybase annnotation

Antisense to three_prime_UTR [3l_8099690_8099825_+]; Antisense to exon [3l_8097153_8099825_+]

No Repeatable elements found

Sense Strand Reads

AATAGCAGAACTTTTGTGTAAGAAAGAAGTTCAATCAAAATTCATTTCGCGCGCACATTTCATTGTTTATATTGTCCCTGAACTTTGTTTAAAAATAAAGCTATGAAAATAACTGATTTACCCTTTGTTTATATGAATGTATTTATATTAATACAACTATGAGTGATAAATATCTTATGAAGAGACAACTTTAGACTTACGAGCTACAGGAAATATCAACGGTAACTTTTAACTAAAGTTATAATTCAGG
**************************************************.......................((..(((((..((((((....((.(((.(((.......(((.((........((((.(((((((....))))))).)))).....)).))).....))).)))))....)))))).)))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
......................................................................ATTGTCCCTGAACTTTGTTTA............................................................................................................................................................... 21 0 1 9.00 9 2 3 1 3 0 0 0 0 0 0 0
..TAGCAGAACTTTTGTGTAAGAAAGAAGA............................................................................................................................................................................................................................ 28 1 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0
..TAGCAGAACTTTTGTGTAAGAAAGA............................................................................................................................................................................................................................... 25 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
........................................................................TGTCCCTGAACTTTGTTTAAAAATAAAGC..................................................................................................................................................... 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................TTGTCCCTGAACTTTGTTTA............................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................TTATATTGTCCCTGAACT...................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................CAAAATTCATTTCGCGCGCA................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................TCATTTCGCGCGCACATTTCATTGTT....................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........TTTTGTGTAAGAAAGAAGTTCAATCAAA................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................TCATTTCGCGCGCACATTTC............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................ATATTGTCCCTGAACTTTGTTTAAAAA........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....GCAGAAATTTTGTGTAAGAAAGAAGTT........................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................AGAGACAACTTTAGACTTACGA................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.ATAGCAGAACTTTTGTGTAAGAAAGAA.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................TCAAAAGTCATTTCGCGCGCACATTT.............................................................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................TCAAAAGTCAATTCGCGCGCACATTT.............................................................................................................................................................................................. 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GACTTACGAGCTACAGGAAA..................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................TATATTGTCCCTGAACTTTGTTTAAAAA........................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TCCCTGAACTTTGTTTAAAAATAAAG...................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................TTCATTGTTTATATTGTCCCTGAACTT..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTGTTGACATGAATGTATTTAAA....................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................TATTGTCCCTGAACTTTGTT................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................TTATATTGTCCCTGAACTTTGTTTA............................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTTATATTGTCCCTGAACTTTGTTTA............................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TCGCGCGCACATTTCATT.......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..TAGCAGAACTTTTGTTTAAGAAAGA............................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................TCATTTCGCGCGCACATTTCATTGTTT...................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.ATAGCAGAACTTTTGTGTAAGAAAGA............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................TAGGAAAGAAGTTCAGTCAAAA.................................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................TATTGTCCCTGGACTTTGTTTAAAAA........................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...AGCAGAACTTTTGTGTAAG.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................CACATTTCATTGTTTATA................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................ATTGTCCCTGAATTTTGTTTA............................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................TATATTGTCCCTGAACTTTGTTTA............................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................TTCAATCAAGGGTCATTTCG......................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCTTTGTTTATATCACTGTATT........................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................TCACTGGGCTTTGTTTAAAA............................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTATATTGTCCGTGAAGAT..................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

-------------------------------------------------------------------------------------------------------------------------#################################################################################################################################
TTATCGTCTTGAAAACACATTCTTTCTTCAAGTTAGTTTTAAGTAAAGCGCGCGTGTAAAGTAACAAATATAACAGGGACTTGAAACAAATTTTTATTTCGATACTTTTATTGACTAAATGGGAAACAAATATACTTACATAAATATAATTATGTTGATACTCACTATTTATAGAATACTTCTCTGTTGAAATCTGAATGCTCGATGTCCTTTATAGTTGCCATTGAAAATTGATTTCAATATTAAGTCC
**************************************************.......................((..(((((..((((((....((.(((.(((.......(((.((........((((.(((((((....))))))).)))).....)).))).....))).)))))....)))))).)))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................................................................ATGCTCGATGTCCTTTATAGTTGCCAT.......................... 27 0 1 2.00 2 0 0 1 0 0 0 1 0 0
....................................................CGTGTAAAGTAACAAATATAACAGGG............................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................GTTAGTTTTAAGTAAAGCG........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................AGGGACTTGAAACAAATTTT............................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGATGTCCTTCATAGTTGTTAT.......................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1
........................................................................ACAGGGACTTGAAACGGATTTT............................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGATGTCCTTTATAGTTGCCAT.......................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TCGATGTCCTTCATAGTTGTTATT......................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGAAATCTGAATGCTCGA............................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................CTCTGTTGAAATCTGAATGCTCGAT............................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATCTGAATGCTCGATGTCCTT...................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................CTGTTGAAATCTGAATGCTCGATGT.......................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................CAAGTTAGTTTTCAGTAAAGC......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTTGATACTCACTATTTATA............................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................TATAACAGGGACTTGAAACAA................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................ACACACTATTGGTAGAATACT...................................................................... 21 3 3 0.67 2 0 0 0 0 2 0 0 0 0
..............................................................................................................................................................................................ACTCTGACTGCTCGATGT.......................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TGACCTATATAGTTGCCA........................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................TTATCTTTTGCAATCTGAATG.................................................. 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TCATTATGATGATACTCA...................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................TCTGAATGCGCGATG........................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0
.....................................................................................AAAAATTTTTAGTTCGATATTT............................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................CTCTGTTGAGATCCG...................................................... 15 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.......................................................................................AAATTTTTAGTTCGATAT................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:40 AM