ID:

dsi_2737

 Coordinate:

2r:5177452-5177601 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTGTGCCCAGGAGGAGAAGATCCAGAAGCATATCACTCCCACAAACACAGGTCAGTAATTAAGGGATATCGGTTAACGTGTGTCCCGGGTCAGTAAACGCAGCGCTCAAAATACACACACTTGGTGTCGAGCAAATGTATTATTGACATATGTAATTTGCTGTTGAATAGTGCAATTAAGAGGTATAACAGTTGCTCGCCTCGTTAATCATTATCGATCAATTAATCAAATTATTGAAAGTGAGTCGATT
**************************************************((.(((((((..(((((((((.....)).)))))))..((((((((..(((..((((...((((.((....)))))).))))...))).)))))))).....(((((((((((...)))))).)))))...........))))))).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
...........................................TACACAGGTCAGTAATTAAA........................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0
..............................................................................TGTGTCCCGGGTGAG............................................................................................................................................................. 15 1 4 0.25 1 1 0 0 0
............................................ACACAGGTCAGTAAT............................................................................................................................................................................................... 15 0 4 0.25 1 1 0 0 0
............................................ACACAGGTCAGTAATT.............................................................................................................................................................................................. 16 0 4 0.25 1 1 0 0 0
.......................................................................GGTAGCGTGGGTCCCGGGT................................................................................................................................................................ 19 3 7 0.14 1 1 0 0 0
..........................................................TTAAGAGATATCGGT................................................................................................................................................................................. 15 1 8 0.13 1 1 0 0 0
.........................................................ATTAAGGGGTATCGGTAC............................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0
.........................................CAAACAAAGGTCGGTAACT.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

GACACGGGTCCTCCTCTTCTAGGTCTTCGTATAGTGAGGGTGTTTGTGTCCAGTCATTAATTCCCTATAGCCAATTGCACACAGGGCCCAGTCATTTGCGTCGCGAGTTTTATGTGTGTGAACCACAGCTCGTTTACATAATAACTGTATACATTAAACGACAACTTATCACGTTAATTCTCCATATTGTCAACGAGCGGAGCAATTAGTAATAGCTAGTTAATTAGTTTAATAACTTTCACTCAGCTAA
**************************************************((.(((((((..(((((((((.....)).)))))))..((((((((..(((..((((...((((.((....)))))).))))...))).)))))))).....(((((((((((...)))))).)))))...........))))))).)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
................................................................................................TGAGTCGAGAGTTTTAGGTGTGT................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................TGTGTCGAGAGTTTTAGGTGTGT................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................TTTGTCGCGAGTTTTAGGTGTGT................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTGTGTCGAGAGTTTTACGTGTGT................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................TGTGTCGAGAGTTTTACGTGTGT................................................................................................................................... 23 3 2 1.00 2 2 0 0 0 0 0 0
.................................................................................................GTGTCGCGAGTTTTAGGTGTCT................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................GTGTGGCGAGTTTTAGGTGTGT................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................GTGTCGAGAGTTTTAGGTGTGT................................................................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0
.....................................................................................................CGCGAGTTTTCTGTGTCTG.................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................GTGTCGCGAGCTTTACGTGTGT................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................GTGTCGAGAGTTTTACGTGTGT................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................CAATGACTTATAGCTAGTTA............................ 20 3 9 0.22 2 0 0 0 2 0 0 0
...............................................................................................................................................................................................................AGTGATAGCTAGTTA............................ 15 1 14 0.21 3 0 0 2 0 0 1 0
..............................................................................................................................................................................................................TAGGTATAGCTAGTTAA........................... 17 2 20 0.10 2 0 0 2 0 0 0 0
................................AGTGAGGGGGTTTGT........................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0
..............TCTGCTAGGTCTGCGTA........................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1
...................................................................................................................................................................................................................ATAGCTAGTTAAATA........................ 15 1 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/23/2015 at 11:34 AM