ID:

dsi_27364

Coordinate:

3r:4499846-4499995 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-11.6	-11.6	-11.6

Flybase annnotation

five_prime_UTR [3r_4499127_4499971_-]; exon [3r_4499127_4499971_-]

Repeatable elements

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

--------------------------------------------------------------------------################################################################################################################################################################################ CGGCGTATGAGCGTGTAACGTTTTCTCCGTGATTTCCACACGCAGCAGCGGTAAATACAACAACAACAACGAAAGAAGCAACCAAAACAATAACAACAACAATAGAAGAGAACAGCGGCAAACGGTTTTCGCTGCGCTTCTCCTATTTTAAGTGCCGAGCGTTTTACTATTTTTACTACACAGCGAAACATACACAGATACACATATATACACAAATATATGTATGTATTTGTTGATGTGTGAGTTGTGC ******************************************************************************************************************..........(((((((((((((...((......))....)))))...................))))))))........****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR618934 dsim w501 ovaries	SRR902009 testis
....................................................................................................................GGCAAACGGTTTTCGCTG....................................................................................................................	18	0	1	1.00	1	0	1	0	0
........................CTCCGTGATTTCCACACGC...............................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................ATGTATGTATTTGTTGATG............	19	0	1	1.00	1	1	0	0	0
...............................ATTTCCACACGCAGCAGCGGTAAATA.................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................TATATGTATGTATTTGTTGATG............	22	0	1	1.00	1	0	1	0	0
..........................................................................................................................................................................TTTTACTACACAGCGAAACATACACA......................................................	26	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................TCTTACTAGACAGCGAAA..............................................................	18	2	3	0.33	1	0	0	1	0
..............GTATCGTCTTCTCTGTGATT........................................................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	1
...................................................................................................................................................................................................................................TTTTGTTGATGTGTGGGT.....	18	2	20	0.05	1	1	0	0	0

Anti-sense strand reads

GCCGCATACTCGCACATTGCAAAAGAGGCACTAAAGGTGTGCGTCGTCGCCATTTATGTTGTTGTTGTTGCTTTCTTCGTTGGTTTTGTTATTGTTGTTGTTATCTTCTCTTGTCGCCGTTTGCCAAAAGCGACGCGAAGAGGATAAAATTCACGGCTCGCAAAATGATAAAAATGATGTGTCGCTTTGTATGTGTCTATGTGTATATATGTGTTTATATACATACATAAACAACTACACACTCAACACG ****************************************************..........(((((((((((((...((......))....)))))...................))))))))........******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M053 female body	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M023 head
..............................................................................................................................AAAGCGATGCGGAGGGGATAA.......................................................................................................	21	3	1	2.00	2	2	0	0	0	0	0	0
......................................................................................................................................................TCACGGCTCGCAAAATGATAAAAATGA.........................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0
.......................................................................TTTCTTCGTTAGTTTTGT.................................................................................................................................................................	18	1	2	0.50	1	0	0	1	0	0	0	0
...............................................................................................................................AAGCGATGCGGAGGGGATAAA......................................................................................................	21	3	3	0.33	1	0	0	0	1	0	0	0
..................................................................................................................................................................................GTGTATCTTTGTATGGGTCTAT..................................................	22	3	7	0.14	1	0	0	0	0	1	0	0
.................................................................................................................................GCGATGCGGAGGGGATAAA......................................................................................................	19	3	7	0.14	1	0	0	0	1	0	0	0
..............................................................................................................................AAAGCGATGCGGAGGGGAT.........................................................................................................	19	3	16	0.13	2	0	0	0	0	0	2	0
..........................................................................................................................GTCAAAGGCTACGCGAAGAG............................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	1
..........................................................TTGTTGTTGTTGCTTT................................................................................................................................................................................	16	0	14	0.07	1	0	0	1	0	0	0	0
.....................................................................................TTGTTATTGTTGTTGTT....................................................................................................................................................	17	0	20	0.05	1	0	0	1	0	0	0	0
.........................................................................TCGTCGTTAGTTTTGTTAGTGT...........................................................................................................................................................	22	3	20	0.05	1	0	0	0	0	1	0	0

Generated: 04/24/2015 at 08:58 AM