ID:

dsi_27353

Coordinate:

3l:7241097-7241162 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7240764_7241096_+]; CDS [3l_7240764_7241096_+]; CDS [3l_7241163_7241387_+]; exon [3l_7241163_7241387_+]; intron [3l_7241097_7241162_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################------------------------------------------------------------------################################################## GTTTCCCCGAGCAGAGCGAACGTACCGAGATTTTGAAGGCCACCACAAAGGTACAATTTTGCTGACATTTCATTCGATAAATTATATTTAAATAATTTTTTTCTTTTCAATCGCAGAACGGAAAGCGTCCGCTTCTGGCCGACGATGTGGATCTCGATGAAATTGC ************************************************........((((.((.............(((((((......)))))))............))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	M053 female body	SRR618934 dsim w501 ovaries	SRR902009 testis	M023 head
...............GCGAACGTACCGAGGGTTCGA..................................................................................................................................	21	3	1	2.00	2	2	0	0	0	0	0	0	0	0
........GAGCAGAGCGAACGTACCGAGATTTTGAA.................................................................................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0	0	0
................CGAACGTACCGAGGGTTCGAA.................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0	0
.TTTCCCCGAGCAGAGCGA...................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..................................................................................................................................GCTCCTGCCCGACGATGTGGA...............	21	2	1	1.00	1	0	0	0	1	0	0	0	0	0
......................................................................................................................................CTGGCCGACGATGTGGATCTCGATGAAAT...	29	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................TGACGCTGCGGATCTCGATGAA.....	22	3	1	1.00	1	0	0	0	0	1	0	0	0	0
.....................................................................TCAGTCGATAAGTTATATATAA...........................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0
..................AACGTACCGAGGTTTCGAA.................................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................................................................ACAAAGAACGGAAAGCGTCCGCTT................................	24	3	1	1.00	1	0	0	0	0	0	1	0	0	0
...............................................................................................................................................GATGTGGATCTCGATGAA.....	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..............TGCGAACGTACCGAGGGTTTGA..................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0
.............GTGCGAACGTACCGAGG........................................................................................................................................	17	2	5	0.60	3	1	2	0	0	0	0	0	0	0
.............................................................................................................AACGCAGAACGGAAAGCG.......................................	18	1	3	0.33	1	0	0	0	0	0	0	1	0	0
..............TGCGAACGTACCGAG.........................................................................................................................................	15	1	5	0.20	1	1	0	0	0	0	0	0	0	0
............TGTGCGAACGTACCGAG.........................................................................................................................................	17	2	8	0.13	1	1	0	0	0	0	0	0	0	0
..............................................................................................................TCGCATAAGGGAGAGCGTC.....................................	19	3	12	0.08	1	0	0	0	0	0	0	1	0	0
..............................................................................................................................................CGCTGCGGATCTCGATGAAG....	20	3	14	0.07	1	0	0	0	0	0	0	0	1	0
.......CAAGCAGAGCGAACG................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0	0	0	0
.................GAACGTACCGAGGGTT.....................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0
..........GCTGAGCGACCGTACCGG..........................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	1
...........CAGAGAGACCGTACCG...........................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0

Anti-sense strand reads

CAAAGGGGCTCGTCTCGCTTGCATGGCTCTAAAACTTCCGGTGGTGTTTCCATGTTAAAACGACTGTAAAGTAAGCTATTTAATATAAATTTATTAAAAAAAGAAAAGTTAGCGTCTTGCCTTTCGCAGGCGAAGACCGGCTGCTACACCTAGAGCTACTTTAACG ************************************************........((((.((.............(((((((......)))))))............))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M025 embryo	SRR553486 Makindu_3 day-old ovaries
.........................................................................AGCTAGTTAATATAAATTTCT........................................................................	21	2	3	0.67	2	1	1	0	0	0	0	0
...............................................................................................................GCGTCTTGCCTTTCGA.......................................	16	1	5	0.20	1	0	0	1	0	0	0	0
...................................TTCCGGAGTTCTTTCCATG................................................................................................................	19	3	10	0.10	1	0	0	0	0	1	0	0
..................................................................TAAAATAGGCTATTTAATA.................................................................................	19	2	12	0.08	1	0	0	0	0	0	1	0
................................................................................................AAAAAAGAATAGTCAGCG....................................................	18	2	12	0.08	1	1	0	0	0	0	0	0
......GGCTTGTCTCGCTTG.................................................................................................................................................	15	1	13	0.08	1	0	0	0	1	0	0	0
.............................................................................................AAAAAAAAAAAAAAGTTAGCGTCT.................................................	24	3	14	0.07	1	0	0	0	1	0	0	0
.....................................................................................................................................AGACCGCCTGCTACTCCTAGAGCT.........	24	2	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 01:33 AM