ID:

dsi_27340

 Coordinate:

3r:959496-959645 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

three_prime_UTR [3r_959646_959844_+]; exon [3r_959646_959844_+]; Antisense to exon [3r_959611_960524_-]; Antisense to three_prime_UTR [3r_959611_960325_-]; intron [3r_959319_959645_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGGTGTCTAGATATAATTTCTCTTTTTTGGGATCACAACATTTTCGTAACATCGAGTTAATTGTAATAATAATCAAATAACATCATTGGCATCATTTGCAAGACCTTTATCCTTATTTATCCTTGCCGAAAGCACCCAAAAAAGTCACAACACTTAATGTCGTATAGTTAAAAACTTCTTTATTGTTTAAAATTTCAGAATCCTCTCTTTAAGTACATATTGCTTCAGTTTCATCTTCTGATTACAGT
**************************************************.....((((((((((((....................((((.....((((((((...................)))).)))).....))))..((((......)))).......))))))))...)))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
........................TTTTTTGGGATCACAACAT............................................................................................................................................................................................................... 19 0 1 13.00 13 10 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTTTCATCTTCTGATTACAGT 21 0 1 5.00 5 3 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTGCTTCAGTTTCATCATCTGA....... 22 1 1 5.00 5 0 0 3 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTTTCATCTTCTGATTACAG. 21 0 1 5.00 5 0 2 1 0 1 1 0 0 0 0 0 0 0 0
........................TTTTTTGGGATCACAACA................................................................................................................................................................................................................ 18 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTTCATCTTCTGATTACAG. 19 0 1 4.00 4 0 0 0 3 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTGCTTCAGTTTCATCTTCTG........ 21 0 1 4.00 4 1 1 0 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGCTTCAGTTTCATCATCTGA....... 21 1 1 3.00 3 0 0 2 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAGTTTCATCTTCTGATTAC... 20 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTTAAGTACATATTGCTTCAG.................... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCTTCAGTTTCATCTTCTG........ 19 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.......................................................................................................................................................................................................GAATCCTCTCTTTAAGTACAT.............................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTCTTTAAGTACATATTGCT........................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................TGTTTAAAATTTCAGAATCCT............................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTTTCATCTTCTGATTAC... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................TTTTTGGGATCACAACAT............................................................................................................................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATCCTCTCTTTAAGTACATAT............................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAGTACATATTGCTTCAGTT.................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CATATTGCTTCAGTTTCATCT............ 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTCTTTAAGTACATATTGC......................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TCAAATAACATCATCGGCATC........................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................TCCTCTCTTTAAGTACAT.............................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTCTTTAAGTACATATT........................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAGTACATATTGCTTCAGT................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTTCAGTTTCATCTTCTGATT..... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAGTACATATTGCTTCAG.................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGAATCCTCTCTTTAAGTAC................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTTTCATCATCTGATTACAG. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCTTTAAGTACATATTGCT........................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACATATTGCTTCAGTTTC................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATATTGCTTCAGTTTCAT.............. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCTTCAGTTTCATCTTCTGAT...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTAAAATTTCAGAATCCTCT.......................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTTTAAGTACATATTGCTTCA..................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACATATTGCTTCAGTTTCAT.............. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................CTTTTTTGGGATCACAACATTT............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TTCATCTTCTGATTACAGT 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCTTTAAGTACATATTGC......................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTCTCTTTAAGTACATAT............................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTTTCATCTTCTGATTACA.. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCAGTTTCATCTTCTGATTAC... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CATATTGCTTCAGTTTCATCATCTGA....... 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAATTTCAGAATCCTCTCTTT...................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................TCATCTTCTGATTACAGT 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATGTATATATTGCTTCAGT................... 19 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCAGAATCCTCTCTTTAAG................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATATTGCTTCAGTTTCATC............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGCTTCAGTTTCATCTTCTGA....... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................ATATTGCTTCAGTTTCATCTT........... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................TTGTTTAAAATTTCAGAATCCT............................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCTTTAAGTACATATTGCTTC...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTGTTTAAAATTTCAGAATCC............................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGGTTCATCATCTGATTACAGT 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................TTGCTTCAGTTTCATCATCTG........ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATTGTTTAAAATTTCAGA................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TATTGCATCAGCTTCATCTTCTT........ 23 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................TCTTTTTAGGGATCGCAAGAT............................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................TTTTTTGGGATCACAACATTT............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGTACGGTTAACAACTTCTT.................................................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................CTTTTTAGGGATCGCAAGAT............................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCTTCAGTCTCATAATCTG........ 19 3 20 0.15 3 0 0 0 0 0 0 0 2 1 0 0 0 0 0
.....................................................................................................................................................................................................................................GTTTCATCATCTGAT...... 15 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................ACCCTTGTCCTTATTTA................................................................................................................................. 17 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTAACATCGAAGT.............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------#####################################################################################
AAACCACAGATCTATATTAAAGAGAAAAAACCCTAGTGTTGTAAAAGCATTGTAGCTCAATTAACATTATTATTAGTTTATTGTAGTAACCGTAGTAAACGTTCTGGAAATAGGAATAAATAGGAACGGCTTTCGTGGGTTTTTTCAGTGTTGTGAATTACAGCATATCAATTTTTGAAGAAATAACAAATTTTAAAGTCTTAGGAGAGAAATTCATGTATAACGAAGTCAAAGTAGAAGACTAATGTCA
**************************************************.....((((((((((((....................((((.....((((((((...................)))).)))).....))))..((((......)))).......))))))))...)))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 M025
embryo
 M024
male body		 M053
female body
 SRR1275483
Male prepupae
.............................................................................................................................................................................................................................AACGAAGTCAAAGTAGAAGAC........ 21 0 1 46.00 46 38 1 0 0 0 0 0 1 5 0 0 0 0 1
..............................................................................................................................................................................................................................ACGAAGTCAAAGTAGAAGAC........ 20 0 1 38.00 38 36 0 0 0 0 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGAGAAATTCATGTATAACGA........................ 21 0 1 18.00 18 0 8 2 2 3 1 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................TTAGGAGAGAAATTCATGTAT............................. 21 0 1 17.00 17 2 3 1 6 3 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................TTCATGTATAACGAAGTCAAA................. 21 0 1 16.00 16 12 0 0 0 0 2 0 0 1 0 0 0 1 0
............................................................................................................................................................................................................................TAACGAAGTCAAAGTAGAAGA......... 21 0 1 12.00 12 9 0 2 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................TATAACGAAGTCAAAGTAGAA........... 21 0 1 12.00 12 6 0 3 0 0 1 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCAAAGTAGTAGACTAATGTC. 21 1 1 10.00 10 0 3 0 5 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGAAATTCATGTATAACGAA....................... 21 0 1 10.00 10 1 0 4 0 0 2 3 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGGAGAGAAATTCATGTATAA........................... 21 0 1 9.00 9 0 2 1 1 3 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAACGAAGTCAAAGTAGAAGA......... 22 0 1 8.00 8 6 0 0 0 0 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................CATGTATAACGAAGTCAAAGT............... 21 0 1 7.00 7 5 0 0 0 0 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTATAACGAAGTCAAAGTAG............. 21 0 1 6.00 6 0 0 2 0 0 1 0 0 0 1 2 0 0 0
.............................................................................................................................................................................................................AGAGAAATTCATGTATAACGAA....................... 22 0 1 5.00 5 0 0 0 1 0 1 2 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGAAGTCAAAGTAGAAGACT....... 21 0 1 5.00 5 4 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................ATTCATGTATAACGAAGTCAA.................. 21 0 1 5.00 5 4 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCAAAGTAGAAGACTAATGTC. 21 0 1 5.00 5 3 0 0 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GAAATTCATGTATAACGAA....................... 19 0 1 4.00 4 0 0 0 0 0 1 3 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AACGAAGTCAAAGTAGAAGA......... 20 0 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TATAACGAAGTCAAAGTAGTA........... 21 1 1 4.00 4 0 2 0 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTCAAAGTAGAAGACTAATGT.. 21 0 1 3.00 3 0 0 2 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................AGGAGAGAAATTCATGTATAACGAAGT..................... 27 0 1 3.00 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGAGAGAAATTCATGTATA............................ 21 0 1 3.00 3 0 1 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................GTCAAAGTAGAAGACTAAT.... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................................................................AAATTCATGTATAACGAA....................... 18 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGAAGTCAAAGTAGAAGA......... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTATAACGAAGTCAAAGTAG............. 20 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................GAAGTCAAAGTGGAGGACAAAT.... 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACGAAGTCAAAGTAGAAGAC........ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCTTAGGAGAGAAATTCATG................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAGTCAAAGTAGAAGACTAA..... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAGTCAAAGTAGTAGACTAA..... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAGAGAAATTCATGTATAAC.......................... 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTAAAGTCTTAGGAGAGAAA...................................... 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAACGAAGTCAAAGTAGAAGAC........ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AACGAAGTCAAAGTAGTAGAC........ 21 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCTTAGGAGAGAAATTCATGT............................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGAGAGAAATTCATGTA.............................. 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AAAAATTCATGTATAACGAA....................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGAAATAACAAATTTTAAAGTCT................................................. 23 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................................................................................................................GAGAAATTCATGTATAACGA........................ 20 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................AAATTCATGTATAACGAAGTC.................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATGTATAACGAAGTCAAAGTA.............. 21 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGAGAGAAATTCGTGTAT............................. 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TTACGAAGTCAAAGTAGAAGAC........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GAGAGAAATTCATGTATA............................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATTACGAAGTCAAAGTAGAAGA......... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGAAGTCAAAGTAGAAGA......... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTAAAGTCTTAGGAGAGAAATTCATGT............................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTAAAGTCTTAGGAGAGAA....................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGGAGAGAAATTCATGT............................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGAAATTCATGTATAACGA........................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGAGAGAAATTCATGTAT............................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGAAATTCATGTATAACGAA....................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATGTATAACGAAGTCAAAGT............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAACAAATTTTAAAGTCTTAG.............................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................AGTCAAAGTAGTAGACTAATG... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTAAAGTCTTAGGAGAGA........................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................AATCTTAGGAGAGAAATTCATGT............................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAACGAAGTCAAAGTAGAAGAC........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAAGTCTTAGGAGAGAAATTC................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................AGAAATTCATGTATAACG......................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGTCAAAGTGGAGGACAAATGT.. 23 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACAAATTTTAAAGTCTTAGGA............................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................AAGTCTTAGGAGAGAAATTCATG................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................AGAAATTCATGTATAACGAAGT..................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGAGAGAAATTCA.................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCATGTATAACGAAGTCAAAGT............... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GAAATTCATGTATAACGAAGT..................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTAAAGTCTTAGGAGAGAAATTCAT................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGAAATTCATGTATAACGAAGTCAAAGT............... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTAAAGTCTTAGGAGAGAAA...................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................AACATGTATAACGAAGTCAAAGT............... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AATTCATGTATAACGAAGT..................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAAGTCTTAGGAGAGAAATTCATGT............................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCATGTATAACGAAGTCAAAGTAGT............ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CAAAGTAGAAGACTAAT.... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGAAGTCAAAGTAGAAGACTAAT.... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTAAAGTCTTAGGAGAGAAATTC................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGTCAAAGTAGTAGACTAATGT.. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................GGAATTCATGTATAACGAAGT..................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CACGAAGTCAAAGTAGAAGAC........ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAGTCAAAGTAGAAGAC........ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAACGAAGTCAAAGTAGTAGA......... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TCAAAGTAGTAGACTAATGTCA 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTATAACGAAGTCAAAGTAGA............ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGTCAAAGTAGAAGACT....... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGAGAAATTCATGTATAACGAAGTCA................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATTTTAAAGTCTTAGGAGAGA........................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGAAGTCAAAGTAGAAGAC........ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAGAGAAATTCATGTATAA........................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTATAACGAAGTCAAAGT............... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGTCAAAGTAGAAGA......... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATTAGGAGAGAAATTCATGTAT............................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAGAGAAATTCATGTATA............................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATTCATGTATAACGAAGTCAAA................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GAAGTCAAAGTAGTAGACTAAT.... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGAGAGAAATTCATGT............................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACAAATTTTAAAGTCTTAGGAGAGAA....................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................CGAAGTCAAAGTAGAAGA......... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATTTTAAAGTCTTAGGAGAG......................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................GAGAAATTCATGTATAACGGA....................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTCTTAGGAGAGAAATTCA.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................AGAAATTCATGTATAACGAAG...................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGGAGAGAAATTCATGTATAAC.......................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGAAGTCAAAGTAGAAGAC........ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAAAAAGTCAAAGTAGAAGAC........ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAAGTCTTAGGAGAG......................................... 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATAAGTCAAAGTAGAAGACTA...... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CCTGGACATAGCAATAAATA................................................................................................................................ 20 3 6 0.50 3 0 0 0 0 0 0 0 0 0 0 0 2 1 0
.................................................................................................................................................................................................................................AAGTCAAAGTGGAGGACAAATG... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ACCAGGAGAGAAATTCATGTAT............................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAAGTAAGAAATTTTAAAGTCG................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................GTAAGGGTTCTGGAAATA.......................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGCTTTCGTGGGTTTA........................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGTCAAAGTGGAGGACAAAT.... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAGTCTTAGGAAAAACATTCA.................................. 22 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAGTCTTAGGTGCGAAAC..................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
......................................................................................................CCGGGACATAGGAATAAATA................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................TTGTGAATTACACCATC................................................................................... 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAGTCTTAGGAGAA......................................... 15 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAGTCAAAGTGGAGGACAAA..... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGAACTTCATGTATA............................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:959446-959695 + dsi_27340 TTTG-------GTGTCTAGATATAATTTCTCTTTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACATTTTCGTAACATCGAGTTAATTGTAATAATAATCAAA---TAAC-------------------------------------------------------ATCAT---TGGCATCATTTGCAAGAC---CT---TTATCCTTATTTAT--------------C-CTTGCCGAAAGCACCCAA----AAAAGTCACAACACTTAAT-GT--C--GTATAGTTAAAAACT--T-C-TTTATTGTTTAAAAT---TTC--AGAATCCTCT-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGT
droSec2 scaffold_6:1176863-1177110 + TTTG-------GTATCTAGATATAAATTCTCT--TTG--------------------------------------------------------------------------------------------------GGGG-----TCACAACATTTTCGTAACATCGAGTTAATTGTAATAATAATCAAA---TAAC-------------------------------------------------------ATCAT---TGGCATCATTTGCAAGAC---CT---TTATCCGTATTTAT--------------C-CTTGCAGAAAGCACCCAA----AAAAGTCACAACACTTAAT-GT--C--GTATAGTTAAAAACT--T-T-TTTATTGTTTAAAAT---TTC--AGAATCCTCT-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGT
dm3 chr3R:1052845-1053095 + CTTA-------GTATCTAGATATAAATTCTCT--TTG--------------------------------------------------------------------------------------------------GGGA-----TCACAGCATTTTCGTAACAGTGATTTAATTGTAATAATAATCAAATCATAAC-------------------------------------------------------ATCAT---CAGCATCATTTGCAAGAC---CT---TTATCCTTATTTAT--------------C-CTTGCAGAAAGCACCCAA----AAAAGTCACAACTCTTAAT-GC--C--GTAAAGTTAAAAACT--T-C-TTTATTGTTTAAAAT---TTC--AGAATCCTCT-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGT
droEre2 scaffold_4770:1328906-1329194 + TTTA-------TT----------------------TGACCAA--------------------------------------------------TAGAATCCACAT---------------------------AACTGGCA-----TTAGTCCATTTTCGAAACAGCGATTTTATTGTAACT----TCAAA-------------TTATGGTTTACTTAAAAGGGAGGTTAATATTCTCACTCAGCCATTTTTGATTAT---CAGCATCATTGTCAAGAC---TT---TTGT-CTTATTTAT--------------C-CTTGCAGGGCGCACCCAA----ATAACTAACAAAACTTTAT-GT--C--CTATAGTTAAAAACT--GC--TTTATTGTTTAAAAT---TTA--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGT
droYak3 3R:1413801-1414050 + TATG-------GTATCT------TATTTCTCT--TTGACCAC--------------------------------------------------TAGAATCCATAT---------------------------AACTGGCA-----TCA---------------AACGATTTTATTGTAACTTCACTCAA------------------------------------------------------CCATTTTTGATTAT---CACCACCATTTGTATGAGAT-CT---GTA---TGATTTAT--------------T-TTTGCAGATAGCATCCAA----ATAAGTCACAAAACTTA-T-GC--C--TTATAGTTAAAAACT--GC--TTTATTGTTTAAAAT---TTC--AGAATCCCCA-CTTTAAGTACAC-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGG
droEug1 scf7180000409759:1019412-1019671 + CTTT-------TTGTATAAATACAG------------------------------------------------------------------------------------AAGAGTGATTCATCCATACACT--------TTTGATCAGGGATTTT-----------------------------TCAAT---TAACAACACAATATGCATTTC--ACCAGATATTTAAATAT---------------------TGAATACAGC--CAAATACTAAAC---TT---GTTTTAAAAATTAT--------------C-TTTGCAGAAAGCACCCAT----T---TCCAGAAGACAAA-TGAA--C--TTATAGTTAAAAACT--T---TTTATTGTTTAAAAT---TTC--AGAGTCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-A------TACAGT
droBia1 scf7180000302411:798471-798597 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TTTGCGGAAGGCACCCAA----ATAATTCACAAAACGTA-T-----C--TTATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGT
droTak1 scf7180000415789:820716-820994 + TTTACGGAGGCTT----------------------TGAACAAGATTATTAGTTTCCAGGTTCTAGTTGAATTTTATGTTTCGCTATTGAACGTAAATTCCATAAAATAAAAGCATGATTCACTCATACAGTAACTGGAATTTGAACAG--A----TCGTTTCA-------------------------------------------------------------------------------------TTGATTAATTACA------------------------------------GT--------------C-TTTGCAGAAAGCACCCAG----AGAATTCAAAACACGTA-TGAT--C--TTATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGT
droEle1 scf7180000491104:2873552-2873680 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCGGAAGCACCCAA----A-AATTCACAAAACTTTAC--TCACATATATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGT
droRho1 scf7180000776795:20640-20886 - A-----------------GGTATAATGACTTA--TTT--------------------------------------------------------------------------------------------------GGCA-----AAACGGCGTACTAGTTTAGACAAGTTAAGTCTGATCATTTT---------------------------------------------------------------------AA---TGCCAGCTTTAGGATGTGATACTATCCGATCAAAATTGATCTTCGCAAAAAAATCATTTTCCGAAAGCACCCAA----T-ATTCCAAAA-AAGTA-TCTT--C--ATATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGT
droFic1 scf7180000453850:423638-423756 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCACCCAA----C-AGTTTAAAAAACATA-TCCC--C--ATATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCCG-AT-----TACAGT
droKik1 scf7180000302707:153115-153235 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGCACCCAC----ACCCGTCAAAC-CAAAA-TCCA--A--ATCGAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TAC--AGAATCTTCA-CTTTAAGTACAT-ATTGC---T-TCAGGTTCTCCTACTG-AA-----GACAAT
droAna3 scaffold_13340:23241432-23241517 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAAAAACT--GCG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-GTTTAAGTACAT-ATTGC-TCT-TCGGGTTCGTGTTCTG-TC-----GGCAAT
droBip1 scf7180000396395:242174-242294 + CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAGAATATCG-GTATAAAGCGCA-TCGT--T--ATCAAGTTAAAAACT--GCG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-GTTTAAGTACATTATTGC---T-TCGGGTTCTTGTTCTG-TC-----GGCAAT
dp5 2:21735213-21735311 - A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CT--C--ATCGAGTTAAAAACT-TGTG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-CTTTAAGTACAT-ATTGC---T-TCAGGTTCATCCGCCG-ACGAATGGACAAT
droPer2 scaffold_3:4519518-4519616 - A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CT--C--ATCGAGTTAAAAACT-TGTG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-CTTTAAGTACAT-ATTGC---T-TCAGGTTCATCCGCCG-ACGAATGGACAAT
droVir3 scaffold_12855:7852638-7852724 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAAAAATCTTGGGATTTATTGTTTACAAT---TTTTCAATA-TTTCA-TTTTAAGTACAT--TTGCAGCT-TCACA---ATTCTCTG-GC-----TGTGGT
droMoj3 scaffold_6540:23075557-23075610 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGTTTAAAATTGTTTC-AAATAT-TAAATCTTTAAGTACAT-TCAG-------------------CTG-AT-----T-----
droGri2 scaffold_15074:4423899-4423980 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAAAATCT-GGTG-TTTATTGTTTAAAAT-G-TTC--AGTAT-TGCA-TTTTAAGTACAT--TCGCTGCCTTC-ACTTCAT--TCTGTAT-----TA----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTG-------GTGTCTAGATATAATTTCTCTTTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACATTTTCGTAACATCGAGTTAATTGTAATAATAATCAAA---TAAC-------------------------------------------------------ATCAT---TGGCATCATTTGCAAGAC---CT---TTATCCTTATTTAT--------------C-CTTGCCGAAAGCACCCAA----AAAAGTCACAACACTTAAT-GT--C--GTATAGTTAAAAACT--T-C-TTTATTGTTTAAAAT---TTC--AGAATCCTCT-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................TTTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACAT...............................................................................................................................................................................................................................................................................................................................19113.0013000010300000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TACAGT2115.00500003100001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCATCTTCTG-AT-----TACAG.2115.00500010200101000000
...............................TTTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACA................................................................................................................................................................................................................................................................................................................................1814.00400002200000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTTCTG-AT-----TACAG.1914.00431000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---T-TCAGTTTCATCTTCTG-.............2114.00411001100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTCATCTTCTG-AT-----TAC...2013.00310002000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTACAT-ATTGC---T-TCAG..........................2112.00200001000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---T-TCAGTTTCATCTTCTG-.............1912.00200200000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCT-CTTTAAGTACAT-........................................2112.00200002000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTAAGTACAT-ATTGC---T-..............................2112.00200001000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAAAAT---TTC--AGAATCCT........................................................2112.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TAC...1812.00200000200000000000
................................TTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACAT...............................................................................................................................................................................................................................................................................................................................1812.00200001100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCT-CTTTAAGTACAT-AT......................................2112.00200002000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAT-ATTGC---T-TCAGTT........................2112.00200002000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC---T-TCAGTTTCATCT..................2112.00200000100001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTAAGTACAT-ATTGC---................................2012.00200001100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCT-CTTTAAGTACAT-........................................1811.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTAAGTACAT-ATT.....................................1811.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAT-ATTGC---T-TCAGT.........................2011.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................C---T-TCAGTTTCATCTTCTG-AT-----T.....2111.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAT-ATTGC---T-TCAG..........................1911.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................C--AGAATCCTCT-CTTTAAGTAC...........................................2111.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CTTTAAGTACAT-ATTGC---T-..............................2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT-ATTGC---T-TCAGTTTC......................1811.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC---T-TCAGTTTCAT....................1811.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---T-TCAGTTTCATCTTCTG-AT-----......2111.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAT---TTC--AGAATCCTCT-.....................................................2111.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAGTACAT-ATTGC---T-TCA...........................2111.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC---T-TCAGTTTCAT....................2111.00100000000000001000
..............................CTTTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACATTT.............................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCTTCTG-AT-----TACAGT1911.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CTTTAAGTACAT-ATTGC---................................1911.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTCT-CTTTAAGTACAT-AT......................................1811.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TACA..1911.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTTCATCTTCTG-AT-----TAC...2111.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAT---TTC--AGAATCCTCT-CTTT.................................................2111.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTTCTG-AT-----TACAGT1811.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTC--AGAATCCTCT-CTTTAAG..............................................2011.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC---T-TCAGTTTCATC...................1911.00100001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---T-TCAGTTTCATCTTCTG-A............2111.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC---T-TCAGTTTCATCTT.................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAAAAT---TTC--AGAATCCT........................................................2211.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................T-CTTTAAGTACAT-ATTGC---T-TC............................2111.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAAAAT---TTC--AGAATCC.........................................................2111.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTAAAAT---TTC--AGA.............................................................1811.00100001000000000000
...............................TTTTTT--------------------------------------------------------------------------------------------------GGGA-----TCACAACATTT.............................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
droSec2
TTTG-------GTATCTAGATATAAATTCTCT--TTG--------------------------------------------------------------------------------------------------GGGG-----TCACAACATTTTCGTAACATCGAGTTAATTGTAATAATAATCAAA---TAAC-------------------------------------------------------ATCAT---TGGCATCATTTGCAAGAC---CT---TTATCCGTATTTAT--------------C-CTTGCAGAAAGCACCCAA----AAAAGTCACAACACTTAAT-GT--C--GTATAGTTAAAAACT--T-T-TTTATTGTTTAAAAT---TTC--AGAATCCTCT-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCATCTTCTG-AT-----TACAG.2114.0044000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAT-ATTGC---T-TCAGTTT.......................2013.0033000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTCATCTTCTG-AT-----TACA..2112.0022000
.......................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAAAT---TTC--AGAATCCTC.......................................................2111.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................TTTATTGTTTAAAAT---TTC--AG..............................................................2011.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTAAGTACAT-ATTGC---T-..............................2111.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CTTTAAGTACAT-ATTGC---T-T.............................2111.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAT-ATTGC---T-TCAGTT........................1911.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................TGTTTAAAAT---TTC--AGAATCCT........................................................2111.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---T-TCAGTTTCATCTTCTG-T............2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTGC---T-TCAGTTTCATCTTCT...............2211.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCAGTTTCATCTTCTG-AT-----TA....2111.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAAAAT---TTC--AGAATCCT........................................................2211.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................AAAAT---TTC--AGAATCCTCT-CTT..................................................2111.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCATCTTCTG-AT-----TACA..2011.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCT-CTTTAAGTACAT-AT......................................2111.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT-ATTGC---T-TCAGTTTCATC...................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAT---TTC--AGAATCCTCT-C....................................................2111.0010100
.................AGATATAAATTCTCT--TTG--------------------------------------------------------------------------------------------------GG...............................................................................................................................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TACAGT2111.0011000
dm3
CTTA-------GTATCTAGATATAAATTCTCT--TTG--------------------------------------------------------------------------------------------------GGGA-----TCACAGCATTTTCGTAACAGTGATTTAATTGTAATAATAATCAAATCATAAC-------------------------------------------------------ATCAT---CAGCATCATTTGCAAGAC---CT---TTATCCTTATTTAT--------------C-CTTGCAGAAAGCACCCAA----AAAAGTCACAACTCTTAAT-GC--C--GTAAAGTTAAAAACT--T-C-TTTATTGTTTAAAAT---TTC--AGAATCCTCT-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
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Ovary		SRR065153
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ML-DmD32		V023
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CME-W1-Cl.8+		V034
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G2		V128
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ML-DmD32		V133
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OSC		V145
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1182-2H		V148
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCAGTTTCATCTTCTG-AT-----......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCCTCT-CTTTAAGTACA..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT-ATTGC---T-TCAGTTTCAT....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCATCTTCTG-AT-----TA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TCACAACTCTTAAT-GC--C--GTAAAGT.....................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCT-CTTTAAGTACAT-A.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................TTCGTAACAGTGATTTAATTG.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC---T-TCAGTTTCAT....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCTCT-CTTTAAGTAC...........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTCGTAACAGTGATTTAATTGTA.......................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAAATTCTCT--TTG--------------------------------------------------------------------------------------------------GGGA-----TCACAGCA................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AT---TTC--AGAATCCTCT-CTTT.................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTAAGTACAT-ATTGG---G-..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCT--TTG--------------------------------------------------------------------------------------------------GGGA-----TCACAGCATTTTCG..........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTTTAAGTACAT-ATTGC---T-T.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---T-TCAGTTTCATCTTCTG-AT-----......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................ATCATTTGCAAGAC---CT---TTATCCTTAT.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CT--T-C-TTTATTGTTTAAAAT---TT...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTTCATCTTCTG-AT-----TACA..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAACT--T-C-TTTATTGTTTAAA..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCTCT-CTTTAAGTACAT-ATT.....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATCATAAC-------------------------------------------------------ATCAT---CAGCAT...............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTGC---T-TCAGTTTCATCTT.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CTTTAAGTACAT-ATTGC---T-G.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................C--C--GTAAAGTTAAAAACT--T-C-TT.....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TACAGC2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC---T-TCAGTTTCATCT..................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCTCT-CTTTAAGTACAT-ATTGC---T-TCAGT.........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................AGCATTTTCGTAACAGTGATT...............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................ATTTTCGTAACAGTGATTTA.............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTAAAGTTAAAAACT--T-C-TTT....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC---T-TCAGTTTCA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC---T-TCAGTTTCATCTTCT...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T---TTC--AGAATCCTCT-CTTTAAGTACA..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC---T-TCAGTTTCAG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAAAAT---TTC--AGAATCC.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTCT-CTTTAAGTACAT-AT......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAGTACAT-ATTGC---T-TC............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTC--AGAATCCTCT-CTTTAAG..............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTAAT-GC--C--GTAAAGTTAAAAACT--T-C-.......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCAGTTTCATCTTCTG-AT-----T.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATCCTTATTTAT--------------C-CTTGCAGAAAGCACC..............................................................................................................................................2911.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TAATAATCAAATCATAAC-------------------------------------------------------ATCAT---CAGC.................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................ACAACTCTTAAT-GC--C--GTAAAG......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TACA..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAT---TTC--AGAATCCTCT-CTTTAA...............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTAAAGTTAAAAACT--T-C-TTTATT.................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AACT--T-C-TTTATTGTTTAAAAT---.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCTCT-CTTTAAGTACAT-ATTGC---T-TC............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................T---TTC--AGAATCCTCT-CTTTAA...............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTGCAAGAC---CT---TTATCCTTATTTAT--------------C-C............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTCTCT--TTG--------------------------------------------------------------------------------------------------GGGA-----TCACAGCATTTTCG..........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCCTCT-CTTTAAGTACAT-........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC---T-TCAGTTTCATCTTCT...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................AAC-------------------------------------------------------ATCAT---CAGCATCATTTGC........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TAAT-GC--C--GTAAAGTTAAAAACT--...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAT---TTC--AGAATCCTCT-T....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................AAT-GC--C--GTAAAGTTAAAAAC..............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAAT---TTC--AGAATCCTCT-C....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTA-------TT----------------------TGACCAA--------------------------------------------------TAGAATCCACAT---------------------------AACTGGCA-----TTAGTCCATTTTCGAAACAGCGATTTTATTGTAACT----TCAAA-------------TTATGGTTTACTTAAAAGGGAGGTTAATATTCTCACTCAGCCATTTTTGATTAT---CAGCATCATTGTCAAGAC---TT---TTGT-CTTATTTAT--------------C-CTTGCAGGGCGCACCCAA----ATAACTAACAAAACTTTAT-GT--C--CTATAGTTAAAAACT--GC--TTTATTGTTTAAAAT---TTA--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................A--------------------------------------------------TAGAATCCACAT---------------------------AACTGGCA-----........................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTGC---T-TCAGTTTCATCTTC................2111.0010000010
..............................................................................................................................................................................................................................................................................................................................GCAGGGCGCACCCAA----ATAACT.................................................................................................................................2111.0010000010
................................................................................................................................................TTAGTCCATTTTCGAAACAGCGAT................................................................................................................................................................................................................................................................................................................2411.0011000000
.......................................................................................................................................................................................................................................................TTTGATTAT---CAGCATCATTGTCAAGAC---T...............................................................................................................................................................................................2811.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCTTCTG-AT-----TACAGT2111.0011000000
..........................................................................................................................................................................................................................................................................ATTGTCAAGAC---TT---TTGT-CTTA..................................................................................................................................................................................2111.0010010000
................................................................................................................................................................................................................................................................................................T-CTTATTTAT--------------C-CTTGCAGGGC...................................................................................................................................................2111.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................TTA--AGAATCCTCA-CTTTAAGT.............................................2111.0010000100
..........................................................................................................................................................................................................................................................GATTAT---CAGCATCATTGTCAAGA....................................................................................................................................................................................................2311.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................TTTATTGTTTAAAAT---TTA--AGAATCC.........................................................2511.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CA-CTTTAAGTACAT-ATTGC---T-T.............................2111.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTTTAAGTACAT-ATTGC---T-TC............................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................T---TTA--AGAATCCTCA-CTTTAAG..............................................2111.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAT---TTA--AGAATCCTCA-CTTT.................................................2111.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................A--AGAATCCTCA-CTTTAAGTA............................................2011.0011000000
..............................................................................................................................................................................................................GGTTTACTTAAAAGGGAGGT......................................................................................................................................................................................................................................................2011.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACAT-ATTGC---T-TCAGTTT.......................2111.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC---T-TCAGTTTCATCT..................2111.0011000000
droYak3
TATG-------GTATCT------TATTTCTCT--TTGACCAC--------------------------------------------------TAGAATCCATAT---------------------------AACTGGCA-----TCA---------------AACGATTTTATTGTAACTTCACTCAA------------------------------------------------------CCATTTTTGATTAT---CACCACCATTTGTATGAGAT-CT---GTA---TGATTTAT--------------T-TTTGCAGATAGCATCCAA----ATAAGTCACAAAACTTA-T-GC--C--TTATAGTTAAAAACT--GC--TTTATTGTTTAAAAT---TTC--AGAATCCCCA-CTTTAAGTACAC-ATTGC---T-TCAGTTTCATCTTCTG-AT-----TACAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC-ATTGC---T-TCAGTTTCATC...................2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---T-TCAGTTTCATCTTCTG-.............2011.00101000000000
droEug1
CTTT-------TTGTATAAATACAG------------------------------------------------------------------------------------AAGAGTGATTCATCCATACACT--------TTTGATCAGGGATTTT-----------------------------TCAAT---TAACAACACAATATGCATTTC--ACCAGATATTTAAATAT---------------------TGAATACAGC--CAAATACTAAAC---TT---GTTTTAAAAATTAT--------------C-TTTGCAGAAAGCACCCAT----T---TCCAGAAGACAAA-TGAA--C--TTATAGTTAAAAACT--T---TTTATTGTTTAAAAT---TTC--AGAGTCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-A------TACAGTSizeHit CountTotal NormTotal
No Reads
droBia1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TTTGCGGAAGGCACCCAA----ATAATTCACAAAACGTA-T-----C--TTATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTACGGAGGCTT----------------------TGAACAAGATTATTAGTTTCCAGGTTCTAGTTGAATTTTATGTTTCGCTATTGAACGTAAATTCCATAAAATAAAAGCATGATTCACTCATACAGTAACTGGAATTTGAACAG--A----TCGTTTCA-------------------------------------------------------------------------------------TTGATTAATTACA------------------------------------GT--------------C-TTTGCAGAAAGCACCCAG----AGAATTCAAAACACGTA-TGAT--C--TTATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCGGAAGCACCCAA----A-AATTCACAAAACTTTAC--TCACATATATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotal
No Reads
droRho1
A-----------------GGTATAATGACTTA--TTT--------------------------------------------------------------------------------------------------GGCA-----AAACGGCGTACTAGTTTAGACAAGTTAAGTCTGATCATTTT---------------------------------------------------------------------AA---TGCCAGCTTTAGGATGTGATACTATCCGATCAAAATTGATCTTCGCAAAAAAATCATTTTCCGAAAGCACCCAA----T-ATTCCAAAA-AAGTA-TCTT--C--ATATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCTTCTTCTG-AT-----TACAGTSizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCACCCAA----C-AGTTTAAAAAACATA-TCCC--C--ATATAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TTC--AGAATCCTCA-CTTTAAGTACAT-ATTGC---T-TCAGTTTCATCTTCCG-AT-----TACAGTSizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATGCACCCAC----ACCCGTCAAAC-CAAAA-TCCA--A--ATCGAGTTAAAAACT--GTG-TTTATTGTTTAAAAT---TAC--AGAATCTTCA-CTTTAAGTACAT-ATTGC---T-TCAGGTTCTCCTACTG-AA-----GACAATSizeHit CountTotal NormTotal
No Reads
droAna3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAAAAACT--GCG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-GTTTAAGTACAT-ATTGC-TCT-TCGGGTTCGTGTTCTG-TC-----GGCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAT-ATTGC-TCT-TCGGGTT.......................21118.0018831015
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-TCGGGTTCGTGTTCTG-TC-----......21118.0018830115
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGTTCGTGTTCTG-TC-----GGC...21116.00161000105
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGC-TCT-TCGGGTTCGTGTT.................21113.0013830020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACAT-ATTGC-TCT-TCGGG.........................2119.009602001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCT-TCGGGTTCGTGTTCTG-T............2119.009900000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTCGTGTTCTG-TC-----GGCA..2117.007700000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCGGGTTCGTGTTCTG-TC-----GG....2117.007700000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC-TCT-TCGGGTTCGT....................2117.007510010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC-TCT-TCGGGTTCGTG...................2116.006401010
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAAAT---TTC--AGAATCTTCA-GT...................................................2116.006002013
...................................................................................................................................................................................................................................................................................................................................................................................................................TTC--AGAATCTTCA-GTTTAAGT.............................................2115.005000005
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAT-ATTGC-TCT-TCGGGT........................2115.005410000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT-ATTGC-TCT-TCGGGTTCG.....................2115.005401000
...........................................................................................................................................................................................................................................................................................................................................................................................................AAAAT---TTC--AGAATCTTCA-GTT..................................................2115.005020012
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTCGTGTTCTG-TC-----GGC...2014.004400000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAT---TTC--AGAATCTTCA-GTTT.................................................2114.004000004
.....................................................................................................................................................................................................................................................................................................................................................................................................................C--AGAATCTTCA-GTTTAAGTAC...........................................2114.004040000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTGC-TCT-TCGGGTTCGTGT..................2114.004210010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTGC-TCT-TCGGGTTCGTG...................2014.004400000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC-TCT-TCGGGTTC......................2113.003110100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-TCT-TCGGGTTCGTGTTC................2113.003110010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCGTGTTCTG-TC-----GGCA..2013.003000003
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TCGGGTTCGTGTTCTG-TC-----G.....2113.003200010
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTACAT-ATTGC-TCT-TCGG..........................2113.003210000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-GTTTAAGTACAT-ATTGC-..................................2113.003030000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTCGTGTTCTG-TC-----GG....1913.003200010
....................................................................................................................................................................................................................................................................................................................................................................................................................TC--AGAATCTTCA-GTTTAAGT.............................................2013.003000012
..................................................................................................................................................................................................................................................................................................................................................................................TTAAAAACT--GCG-TTTATTGTT..............................................................................2113.003200010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCA-GTTTAAGTACAT-ATTGC-T.................................2113.003010011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTGTTCTG-TC-----GGCAAT2113.003210000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-TCT-TCGGGTTCGTGTTCT...............2113.003200010
................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GTTTAAGTACAT-ATTGC-TC................................2112.002001010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCGTGTTCTG-TC-----GGC...1912.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCGGGTTCGTGTTCTG-TC-----GGC...2212.002100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAT-ATTGC-TCT-TCGGGTT.......................2212.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGTTCGTGTTCTG-TC-----GG....2012.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAT-ATTGC-TCT-TCGG..........................1812.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-TCT-TCGGGTTCGTGTTC................2012.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTGTTCTG-TC-----GGCAA.2012.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC-TCT-TCGGGTTCGC....................2112.002020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-TCT-TCGGGTTCGTGTTCTG-.............2112.002110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC-TCT-TCGGGTTCGTGT..................2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-TCGGGTTCGTGTTCTG-.............1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGTACAT-ATTGC-TCT-TC............................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCGTGTTCTG-TC-----GG....1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-TCT-TCGGGTTCGTGTTT................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................AAT---TTC--AGAATCTTCA-GTT..................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAAACT--GCG-TTTATTG................................................................................2111.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC-TCT-TCGGGTTCGTT...................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC-TCT-TCGGGTT.......................1811.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTC--AGAATCTTCA-GTTTAAGTAC...........................................2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAT-ATTGC-TCT-TCGGGTC.......................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCGGGTTCGTGTTCTG-TC-----G.....2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAT-ATTGC-TCT-TCGGGC........................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAT---TTC--AGAATCTTCA-G....................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTAAAAT---TTC--AGAATC..........................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................AT---TTC--AGAATCTTCA-GTTTAA...............................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATTGC-TCT-TCGGGTTCG.....................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGTTCTG-TC-----GGCAAG2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-TCT-TCGGGTTCGTGTTCTG-.............2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTC--AGAATCTTCA-GTTTAAG..............................................2011.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC-TCT-TCGGGTT.......................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-ATTGC-TCT-TCGGGTTCG.....................2011.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................TC--AGAATCTTCA-GTTTAAGTA............................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC-TCT-TCGGGTTCGTGT..................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTGTTCTG-TC-----GGCAA.1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCT-TCGGGTTCGTGTTCTG-.............2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCA-GTTTAAGTACAT-ATTGC-..................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTGTTCTG-TC-----GGTT..1920.501100000
droBip1
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAGAATATCG-GTATAAAGCGCA-TCGT--T--ATCAAGTTAAAAACT--GCG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-GTTTAAGTACATTATTGC---T-TCGGGTTCTTGTTCTG-TC-----GGCAATSizeHit CountTotal NormTotal
No Reads
dp5
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CT--C--ATCGAGTTAAAAACT-TGTG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-CTTTAAGTACAT-ATTGC---T-TCAGGTTCATCCGCCG-ACGAATGGACAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................T---TTC--AGAATCTTCA-CTTTAAG..............................................2112.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---T-TCAGGTTCATCCGCCG-AC...........2112.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCCGCCG-ACGAATGGAC...2112.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCGCCG-ACGAATGGACA..2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAAAT---TTC--AGAATCTTC.......................................................2111.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAAAT---TTC--AGAATCTTCA-CT...................................................2111.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAT-ATTGC---T-TCAGGTTCAT....................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---T-TCAGGTTCATCCGCC...............2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCATCCGCCG-ACGAATG......2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---T-TCAGGTTCATCCGCCG-.............2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGC---T-TCAGGTTCATCCGCC...............2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAGTACAT-ATTGC---T-TC............................2011.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---T-TCAGGTTCATCCGCCG-A............2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................C--AGAATCTTCA-CTTTAAGTAC...........................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAT-ATTGC---T-TCAGGTTC......................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCA-CTTTAAGTACAT-ATTGC---................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTACAT-ATTGC---T-TCAGG.........................2111.0010100000000
droPer2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CT--C--ATCGAGTTAAAAACT-TGTG-TTTATTGTTTAAAAT---TTC--AGAATCTTCA-CTTTAAGTACAT-ATTGC---T-TCAGGTTCATCCGCCG-ACGAATGGACAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................C---T-TCAGGTTCATCCGCCG-A............1911.001010000
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAAAAATCTTGGGATTTATTGTTTACAAT---TTTTCAATA-TTTCA-TTTTAAGTACAT--TTGCAGCT-TCACA---ATTCTCTG-GC-----TGTGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TCACA---ATTCTCTG-GC-----TGTG..2113.003002000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-TCACA---ATTCTCTG-GC-----TG....2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAT--TTGCAGCT-TCACA---AT....................2111.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT-TCACA---ATTCTCTG-GC-----TGT...2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TGGGATTTATTGTTTACAAT---T....................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGGGATTTATTGTTTACAA.........................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CA-TTTTAAGTACAT--TTGCAGC................................2111.001000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCACA---ATTCTCTG-GC-----TGTGG.2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCT-TCACA---ATTCTCTG-GC-----......2111.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAGTACAT--TTGCAGCT-T.............................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGTTTAAAATTGTTTC-AAATAT-TAAATCTTTAAGTACAT-TCAG-------------------CTG-AT-----T-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGTACAT-TCAG-------------------CTG-AT-----T-----2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTAAGTACAT-TCAG-------------------CTG-.............2111.001100000
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAAAATCT-GGTG-TTTATTGTTTAAAAT-G-TTC--AGTAT-TGCA-TTTTAAGTACAT--TCGCTGCCTTC-ACTTCAT--TCTGTAT-----TA----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TCGCTGCCTTC-ACTTCAT--T.................2111.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT--TCGCTGCCTTC-ACTTCA.....................2111.00110

Generated: 05/19/2015 at 05:40 AM