ID:

dsi_27322

Coordinate:

3l:8095077-8095270 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-9.3	-8.5	-8.3

Flybase annnotation

exon [3l_8094992_8095076_+]; CDS [3l_8094992_8095076_+]; CDS [3l_8095271_8095527_+]; exon [3l_8095271_8095527_+]; intron [3l_8095077_8095270_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCGCACCATTACGCAGAGCTATTATCGCTCGGCCAACGGTGTCTTAATTGGTGAGTCCCAGTATCGGTATCTTTTGTTTCGGGGGCATAGGCATACGCCCATCCATTTGTCATGCCAAATAGGTACTACTGATAACCAGAGAACGCTTTAAAGTGATTGCCTGGCACTGATTTAAATAGCGAAGCGCCTTATCAGCGGGGTGTTTGTTTACCCTGCTTGAATACCATGTGTTTCCTCCTGACAGTTTACGACATCACCAAGCGGTCTTCCTTTTCCAACCTGCAAAAATGGATC *******************************************************************************************************************..................((((..((((((....)))).))..)))).*******************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR618934 dsim w501 ovaries	M023 head	M025 embryo	M053 female body	O002 Head	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
...................................................................................................................................................................................................................................................GTTTACGACATCACCAAGCGG..............................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................TTGGTGAGTCCCAGTATCGGT..................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................AATAGGTACTACTGATAACCA............................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................CTTTAAAGTGATTGCCTGGC.................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TTGTTTACCCTGCTTGAATA.......................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..........ACGCAGAGCTATTATCGCTCG.......................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CCAAGCGGTCTTCCTTTTCCAACCT.............	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TCCAGAGAACGCTTTAAAA.............................................................................................................................................	19	2	2	0.50	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................AGGTCGTACTGATAACC.............................................................................................................................................................	17	2	7	0.43	3	0	2	0	0	0	0	0	0	0	1
.........................CGCTCGGCCAACGGGG.............................................................................................................................................................................................................................................................	16	1	3	0.33	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................TTTAAAGTGATTGGGTGG..................................................................................................................................	18	2	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................GGTCGTACTGATAACC.............................................................................................................................................................	16	2	20	0.15	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................CACTGATTTAACTAG...................................................................................................................	15	1	9	0.11	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................TACGACGTCGCCAAGC................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...................................................................TTTCTTGTGTTTCGGGG..................................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................ATTGCCTGGCTCTGATG..........................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

Anti-sense strand reads

AGCGTGGTAATGCGTCTCGATAATAGCGAGCCGGTTGCCACAGAATTAACCACTCAGGGTCATAGCCATAGAAAACAAAGCCCCCGTATCCGTATGCGGGTAGGTAAACAGTACGGTTTATCCATGATGACTATTGGTCTCTTGCGAAATTTCACTAACGGACCGTGACTAAATTTATCGCTTCGCGGAATAGTCGCCCCACAAACAAATGGGACGAACTTATGGTACACAAAGGAGGACTGTCAAATGCTGTAGTGGTTCGCCAGAAGGAAAAGGTTGGACGTTTTTACCTAG *******************************************************************************************************************************..................((((..((((((....)))).))..)))).*******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	GSM343915 embryo	M025 embryo	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
.................................................CCACTCAGGGTCATAGCCATA................................................................................................................................................................................................................................	21	0	1	3.00	3	2	1	0	0	0	0	0
.................................................................................................................CGGTTTATCCATGATGACTA.................................................................................................................................................................	20	0	1	2.00	2	2	0	0	0	0	0	0
...........................GAGCCGGTTGCCACAGAATTA......................................................................................................................................................................................................................................................	21	0	1	2.00	2	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................GTAGTGGTTCGCTAGAATGGAAA....................	23	3	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................GCGGGTAGGTAAACAGTACG...................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................TCCGTATGCGGGTAGGTA............................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................TGAGGACTGTCAAATGCTGTAGT......................................	23	1	1	1.00	1	1	0	0	0	0	0	0
.....................................................TCAGGGTCATAGCCATAGAAA............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................ATGCGGGTAGGTAAACAGTACG...................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................CCAGAAGGAAAAGGTTGGACG...........	21	0	1	1.00	1	0	0	0	1	0	0	0
.....................................................CCAGGGTCATAGCCATAGAAAACA.........................................................................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................CAGAAGGAAAAGGTTGGA.............	18	0	1	1.00	1	1	0	0	0	0	0	0
.................................................CCACTCAGGGTCAGAGCGA..................................................................................................................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................AGGACTGACAAATGCTA..........................................	17	2	5	0.20	1	0	0	0	0	0	1	0
....................................................................................................AAGGTAAACAGCACGGTT................................................................................................................................................................................	18	2	8	0.13	1	0	0	0	0	0	1	0
..................................................................................................GGTAGGTAAACAGTAACGGTT...............................................................................................................................................................................	21	3	13	0.08	1	0	0	0	0	0	0	1
.................................................................................................................................TCGGTTGGTCTCTTGCGAA..................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:39 AM