ID:

dsi_27312

 Coordinate:

2l:6254827-6254976 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2l_6254977_6255044_-]; exon [2l_6254977_6255044_-]; intron [2l_6253998_6254976_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAAAACCGTAATTAGATGTAATCAAAGTGTAGCTAGTTATCCCAATTGCTGCTGTATCATGTAATGTTCGAATTTTCCCAACAATTAGCGGCTTTTCTCGTCTTTTACGTGTGTTTTACCGAGTGAATCTCGCTTTGCTCTCTGCCAGTGTTGCCAGCGCACGCGTTTTGTGGTTGCTTTCACTTGTCAAAAA
**************************************************....(((....(((((((..(((((.....(((((...(((((((......(((((...........))))).................))))))).)))))...))))).))))).))....))).(((((((......)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 GSM343915
embryo
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
 SRR902009
testis
..............AGTATACTGCCGGAAATC.......................................................................................................................................................................................................................... 18 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TGTTGCCAGCGCACGCGTTTTG....................... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0
...........TGCAGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0
............................AATCGCAAAACCGGAGCGCAAG........................................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........CTGCAGTATACCGCCGGAAATCGCAAA..................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.CAAACCGTTCTGCAGTATACTGCC................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............AGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGCTCTCTGCCAGTGTTGC....................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................CTCTGCCAGTGTTGCCAGCGC................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................GTTGGTTATCCGAATTGCTGCT............................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................GGAAATCGCAAAACCGGAGCGCAAGATC..................................................................................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TCGCAAAACCGGAGCGCAAGATCC.................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......GTTCTGCAGTATACTGCC................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........TGCAGTATACTGCCGGAAATCGCAAAAC................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
...........................AAATCGCAAAACCGGAGC............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....ACCGTTCTGCAGTATACTG................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................AAACCGGAGCGCAAGAT...................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
..........................................ATCGTAAGGTGTGTCTAAA............................................................................................................................................................................................. 19 3 7 0.43 3 0 0 0 3 0 0 0 0 0 0 0
............................................CGTAAGGTGTGTCTAAA............................................................................................................................................................................................. 17 2 8 0.38 3 0 0 0 3 0 0 0 0 0 0 0
.....................................ACCGGAGCGCAAGAT...................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CACGTGTTTTGTGGCTGCTTTTA........... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................TGTATAAAACTGTAAT..................................................................................................................................................................................... 16 1 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................ATAATTAGGGGCTTTTTTCG............................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0
....................................AACCGGAGCGCTAGCT...................................................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................ACTGCCGGAACGCGAAAAA.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................ATACCGAGTGAATCTGTC............................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTTTGGCAAGACGTCATATGACGGCCTTTAGCGTTTTGGCCTCGCGTTCCACACATATTTTGGCATTAATCTACATTAGTTTCACATCGATCAATAGGGTTAACGACGACATAGTACATTACAAGCTTAAAAGGGTTGTTAATCGCCGAAAAGAGCAGAAAATGCACACAAAATGGCTCACTTAGAGCGAAACGAGAGACGGTCACAACGGTCGCGTGCGCAAAACACCAACGAAAGTGAACAGTTTTT
**************************************************....(((....(((((((..(((((.....(((((...(((((((......(((((...........))))).................))))))).)))))...))))).))))).))....))).(((((((......)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M025
embryo
 M023
head
......................................................................................................................................................................ACACAAAATGGCTCACTTA................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................CACAAAATGGCTCACTTA................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.............GTCATATGACGGGCT.............................................................................................................................................................................................................................. 15 1 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................TGGTACATTACAAGCTTAAAA..................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
AGTTTGGCAAGACGTCATATG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................................................................................................AAATGCACACAAAATGGCTCACTTAG................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................TGTTAATCGCAGAAAAG................................................................................................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0
...........ACGTCCTATGACGGCCTC............................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 1 0 0 0 0 0
.GTTTGGCAAGACGTCGTGTGG.................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0
.....................................................................................CATCGGTCAATAGGGATA................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
..........................................TCGCGTTCCACGCAAGTTT............................................................................................................................................................................................. 19 3 20 0.15 3 0 0 0 2 0 0 0 1
.........................................CTCGCGTTCCACGCAAGTTT............................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 1 0
.....................................................................................CATCGGTCAATAGGGAT.................................................................................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0 0 0
...................TGACGGCCTTTAGCA........................................................................................................................................................................................................................ 15 1 10 0.10 1 1 0 0 0 0 0 0 0
.................TTTGACGGCCTTTAG.......................................................................................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................CGATCAATAGGGATA................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0
........................................................................................CGGTCAATAGGGTTA................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0
.......................................................................................TCGGTCAATAGGGTT.................................................................................................................................................... 15 1 11 0.09 1 1 0 0 0 0 0 0 0
...........................................................................................TCAATAGGGATAGCGA............................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................TGGGTTAACGACCACGTAG....................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0
.........................................CTCGCGTTCCACGCAAGTT.............................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0
.............GTCATATGACGGGCTG............................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................ACCGCTGAAAAGAGCAG........................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:6254777-6255026 - dsi_27312 TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAATTAGATGTAATCAA----------------------AG---------------------TGTA-----GC---------------------TAGTTA----------------------TCCCAA--TTGCTGCTGTA-------------------------------------------------------------TCATGTA-ATGTTCGAATTTTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGTGAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAA
droSec2 scaffold_5:4529126-4529375 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAAATAGATGTAATCAA----------------------AG---------------------TGTA-----GT---------------------TAGTTA----------------------TCCCAA--TTGCTGCTTTA-------------------------------------------------------------CCGTGTA-ATGTTCGAATTTTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGCGAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAA
dm3 chr2L:6479834-6480083 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAATTAGATGTAATCAA----------------------AG---------------------TGTA-----GC---------------------TAGTTA----------------------TCCCAA--TTGCTGCTGTA-------------------------------------------------------------CCATGTA-ATGTTCGAATTTTCCCAACAATTTGCGGCTTT-TCTCGTC-TTATA------------CG--TGTGT----TTT-TCCG-----AGCGAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCCCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAA
droEre2 scaffold_4929:15388673-15388923 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAATTAGATGTAATCAA----------------------AG---------------------GCCA-----GA---------------------TTATTG----------------------CCCCAA--TTTGTGCTGTG-------------------------------------------------------------CCATGTA-AAGTTCGAATTTTCCCAACAATTAGCGGCTTTTTCTCTGC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGCTAATCTCGCCTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAA
droYak3 2L:6436782-6437031 + TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGTAAGGTGTGTATTA-------A-------ATCGTAATTAGATGTAATCAC----------------------AG---------------------CCCA-----GA---------------------TTATTG----------------------TCCCAA--TTTGTGCTGTA-------------------------------------------------------------CCATGTA-AATATCTAATTTTCCCAACAATTAGCGGCTTT-TCTCAGC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGCTAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAA
droEug1 scf7180000409463:1904753-1904997 - TCAAACCCTTCTGCAGTATACTGCCAGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------CCTTTTTTCTAATG--ATCAA----------------------AG---------------------TCTAT----GG---------------------TAATAG----------------------GCATTA--TTTG-GGTGTT-------------------------------------------------------------TCATTAA-AAGCTCAAATATGTCGAATAATTTGCGGCTTT-TTTATG--TTGTA------------CG--TGTAT----CTT-ACCG-----AGCTAATCTCCCCCTACC----T-TTGCCAGTGTTGCCAGCGCACGCGTTT-CGTG--GTTGCTTTCACTTGTC---AAA-A
droBia1 scf7180000302422:2996002-2996251 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATAA-------C-----AAGCGTTGATTCGAGGG--TTAA----------------------AG-------------------TT-CTC-----GA---------------------GAATGC--------------------A-TCGCAA--GTG-TGGTGTC-------------------------------------------------------------CCCAGAA-ATGTTTTAAGCAGTGTGGAAACTAGCGGTCTT-TCTGCGT-TTT--------------TG--TGAGT----TTTCCCTGAAGTGAGCTAATCTC--TCAACT----T-TGGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAA--
droTak1 scf7180000415858:224552-224801 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATGA-------A-----AATCCTTAATTCAATAG--ACAA----------------------AA-------------------TACCC------TA---------------------GAGTCT----------------------CCCCAA-AGTG-TGGTGTT-------------------------------------------------------------TCATGAA-ATGCACAAATTTCTCTAACAATTAGCGGCCTT-CCTTGGT-TT--A------------CG--TGTGTGT--TTT-CCTGA----GGGTTATCTCCCCCGACT----T-TGACCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAA-A
droEle1 scf7180000490970:488287-488538 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCAGAGCGCAAGGTGTGTATAA-------A-------TCTGTAATTTAATATG-CCAA----------------------AG--------------------GTCTT-----GG---------------------CAGTT-----------------------TCCCAACAGTGC-TGTGTT-------------------------------------------------------------TCTTGTA-A--TTAAAATTTGGCTTACAATTAGCGGCTTT-TCTCCGTGTTTAA------------CG--TGTGTGTTTTTT-TCTG-----AGGTAATCTCCCCCCACT----T-TTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAA
droRho1 scf7180000779524:176828-177077 - TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA-------A-------TCTTTATTTTAAT--AAGCAA----------------------AA-------------------CGTCTA-----GG---------------------GA-TTT----------------------TCCCAACAATGC-AGTGTT-------------------------------------------------------------TGGTGTA-A--TTCGCATCTGGTGTTCAATTAGCGGCTTT-TCACCGT-TTTTA------------CG--TGTATAA--TTT-GCCGA----AGTTAATATACCCCTACT----T-CTGCCAGTGTTGCCAGCGCACGAGTTT-TAGT--GTTGCTTTCACTTGTC---AAAAA
droFic1 scf7180000453973:70195-70444 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA-------A-------TTTGAAGTTAAATTTTAA--------------------------G------GCAATG---------TGTG-----CG---------------------GAGTTT----------------------TTCCACCTGTAT-AGTCAT-------------------------------------------------------------T--TGTA-AAGTTTGATTTTGACAGATAATTAGCGGCTTT-TCTCTG--TTTTA------------CG--TGTGT----TTTTTCGG-----AGGCAATCTCCCCCTACT----C-TGACCAGTGTTGCCAGCGCACGCGTTT-TATG--GTTGCTTTCACTTGTC---AAAAA
droKik1 scf7180000302590:45100-45359 - TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA-------A-------TCTGTAATTTAATATAA--------------------------------GA-------------CT-TATTCTTTGGCTTAAGTAAGG-----------------------------------------------------AGTTCCCTGAGTCTGCGTTGAGTAAATAACCACATTCAATT-----AAAT------AATTATGCACTATTTT-C-TT-GTGATTTGTA--ATAATT---TTCTAC-------------------------------GAGT----TT---------------------CCCCTACATGCAT-CTGCCAGTGTTGCCAACACACGCGTTT-GGTG--GTGGCTTTCACTTGTA---GAAAA
droAna3 scaffold_12916:13601957-13602202 + TCAAGCCTTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTACCATTATAACTAA-----CTAATAAGTATTAAGTGA----------------------AG---------------------TCCA-----GT---------------------AACAT-TTTTTGTGGTAGTGTCTTT-AA--CGA-AA----------------------------------AA------------G--------------TG---------------------CATTTTGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTTCT------------GC--TGCCC----CTT-ACCC------------CTCCCCCTGAG---ACCAGTCCAGTGTTGCCAGCGCACGG--------G--GTGGCTTTCACTTGTC---AAAAA
droBip1 scf7180000396535:573732-573974 + TCAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTACCATCAAAACTGA-----ATAATAAGTATTAAGTAA----------------------AG---------------------TCTA-----GA---------------------AACAT-TTTTTGTGGTAGTGTCTTTGAA--AAA-AAG--------------------------------------------------------------TG---------------------CAATTTGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTT--------------CGTCTCCCT----ATT-ACCC----------------CCTCCCCCTCAG-TGTTCAGTGTTGCCAGCGCACGG--------G--GTTGCTTTCACTTGTC---AAAAA
dp5 4_group1:1530243-1530474 - dps_1361 TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA-------T-------A-------TAGTTGTAACTAA----------------------AGTTTAAG-------------TT-CAATGTTAGGAAGATGTGGGGA---------GAGTG--------------------GAA--TGA-AAG--------------------------------------------------------------TGATTTGTTTCATTTT-A-GC-TTAATTTGTTTTATATTTAGCGGCCGT-------------------------------GCGT----TTA-AC-----------------AATTGGTC---GG-CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTC---AAAAA
droPer2 scaffold_5:3676503-3676733 + TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA-------T-------A-------TAGTTGTAACTAA----------------------AGTTTAAG-------------TT-CAATGTTAGGAATATGTGGGG----------GAGTG--------------------GAA--TGA-AAG--------------------------------------------------------------TGATTTGTTTCATTTT-A-GC-TTAATTTGTTTTATATTTAGCGGCCGT-------------------------------GCGT----TTA-AC-----------------AATTGGTC---GG-CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTC---AAAAA
droWil2 scf2_1100000004884:586086-586359 - TCAAACCCTTTTGCAGTATATTACCTGAAATTGCAAAGCCGGAGCGTAAGGTGCGTATGA-------A-------AA-GT-ATTAAATATTGATAA----------------------AA-------CGATTTGCATTG-GAGTG-----TT----------TAGCTTTCCTAG--------------------------------A--TTGCT-CTGCA------------------TATT-TTTGACATACATAT-----ATGTA--------------TAATATATATGTTTTTAAT-ATTTGCCAATTAGT----------------TAAGTGTCTGTTTTTTGG-TTTCTT----TTC-ACCG------------------TCAC----CA-CTGCCAGTGTTACCATCGCTTACGTTT-TATTCTCTTGCTTTCACTTGTCGGAAAAAA
droVir3 scaffold_12723:4486449-4486686 - dvi_1670 TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAA-------G-------TA-TTGATT----------AAGAGTATA----------------T-------TTATTAGCAATG--GTTA-----AAT---------TAACGT------------------G------GC--------AAA-------------------------------------AG------------CTGTGATTTATAAAGTG--------------------TGT-TTTTTTTTTTTTTTGG----------------TTTGG------------TT--TGTGC----GTT-TTCG-----TATCGTATTTGCTTTGCT------GTGCCAGTGTTGCCAGCGCACGCGTTATTTTT--TTTGCTTTCACTTGTC---AGTCG
droMoj3 scaffold_6500:7571891-7572136 + TCAAGCCCTTCTGCAGTATACTGCCAGAAATTGCAAAGCCAGAGCGCAAGGTATGTAGAATTACCAAAAGACA-----GCTATATGTAT-----------ATATTTCTTTACGT---------------------------ACTA-----AAT---------TACAGT------------------G------TC--------AAA-------------------------------------AA------------GTGTAATTTGTGATGAA-------CT---------------------------CTTTTGGTTTT-TCGGTG--TTTAA------------TT--TGCGT----TT---ATA-----TATCGTATTTGATTTGCA---GT-GCACCAGTGTTGCCAGCGCACGCGTTT-TTTAGGTTTGCTTTCACTTGTC---GGTTG
droGri2 scaffold_15126:3440890-3441113 - TCAAGCCCTTTTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGAGTAAAC----------------CCAGATATATATATTGTTAA----ATA----TTTATATGAAAAG-------------------TTGCT-----------------------------------------------------------AAA-------------------------------------AC------------CTAAGATTTATGCTGTG-------CT-TGTG-AAATTTGAG--------------------------------TTTAA------------TG--TGTGC----ATT-TCAA-----TGTCGTTTTTGGTACGCT---GG-GCGCCAGTGTTGCCAGCGCGCACGTTT--------TTGCTTTCACTTGCC---AGCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAATTAGATGTAATCAA----------------------AG---------------------TGTA-----GC---------------------TAGTTA----------------------TCCCAA--TTGCTGCTGTA-------------------------------------------------------------TCATGTA-ATGTTCGAATTTTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGTGAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............AGTATACTGCCGGAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00301200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCCAGCGCACGCGTTT-TG............................2212.00200001000000100000
...........TGCAGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
............................AATCGCAAAACCGGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020000000000000
.CAAACCGTTCTGCAGTATACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..............AGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGCT---CT-CTGCCAGTGTTGC.............................................2111.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CT-CTGCCAGTGTTGCCAGCGC.......................................2111.00100000000000100000
.......GTTCTGCAGTATACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...........TGCAGTATACTGCCGGAAATCGCAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...........................AAATCGCAAAACCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
....ACCGTTCTGCAGTATACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
droSec2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAAATAGATGTAATCAA----------------------AG---------------------TGTA-----GT---------------------TAGTTA----------------------TCCCAA--TTGCTGCTTTA-------------------------------------------------------------CCGTGTA-ATGTTCGAATTTTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGCGAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................ATACTGCCGGAAATCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
..............AGTATACTGCCGGAAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021010
................TATACTGCCGGAAATCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................AAATCGCAAAACCGGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......GTTCTGCAGTATACTGCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........CTGCAGTATACTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......CGTTCTGCAGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--GTTGCTTTCACTTGTC---A....2111.0011000
.............................ATCGCAAAACCGGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............AGTATACTGCCGGAAATCGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..............AGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAATTAGATGTAATCAA----------------------AG---------------------TGTA-----GC---------------------TAGTTA----------------------TCCCAA--TTGCTGCTGTA-------------------------------------------------------------CCATGTA-ATGTTCGAATTTTCCCAACAATTTGCGGCTTT-TCTCGTC-TTATA------------CG--TGTGT----TTT-TCCG-----AGCGAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCCCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............AGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATA------------CG--TGTGT----TTT-TCCG-----AGCG..............................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACCGGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACCGTTCTGCAGTATACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCAAAACCGGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAAAACCGGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000
.........................GGAAATCGCAAAACCGGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAACCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAAAACCGGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAACCGGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CAAAACCGGAGCGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........TGCAGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTGCCAGCCCACGCGTT................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................C-TTATA------------CG--TGTGT----TTT-TCCG-----A.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............GTATACTGCCGGAAATCGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
TCAAACCGTTCTGCAGTATACTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................GGAAATCGCAAAACCGGAGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................ATGTAATCAA----------------------AG---------------------TGTA-----GC---------------------TAG.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............GTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGTTCTGCAGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGTATACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ATCTCGCTTTGCT---CT-CTGCCAGTGTTGCC............................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACCGGAGCGCAAGGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TGCTGTA-------------------------------------------------------------CCATGTA-ATGTTCG...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................TACTGCCGGAAATCGCAAAACCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................AATCGCAAAACCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................C---------------------TAGTTA----------------------TCCCAA--TTGCTGCT..............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAACCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAACCGTTCTGCAGTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCAGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCTGCAGTATACTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCAGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TGCGGCTTT-TCTCGTC-TTATA------------............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCTGCAGTATACTGCCGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CT-CTGCCAGTGTTGCCAGCCCACG....................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATACTGCCGGAAATCGCAAAACCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGCAGTATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGTGT----TTT-TCCG-----AGCGAATCTCG.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TA-ATGTTCGAATTTTCCCAAC...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TGT----TTT-TCCG-----AGCGAATCTCG.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................G--TGTGT----TTT-TCCG-----AGCGAAT...........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAATCGCAAAACCGGAGCGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
TCAAACCGTTCTGCAGTATACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................T---CT-CTGCCAGTGTTGCCAGCCCA......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACAATTTGCGGCTTT-TCTCGTC-.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGCAGTATACTGCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AATTAGATGTAATCAA----------------------AG---------------------TGT.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................ATACTGCCGGAAATCGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCTGCAGTATACTGCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------ACCGTAATTAGATGTAATCAA----------------------AG---------------------GCCA-----GA---------------------TTATTG----------------------CCCCAA--TTTGTGCTGTG-------------------------------------------------------------CCATGTA-AAGTTCGAATTTTCCCAACAATTAGCGGCTTTTTCTCTGC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGCTAATCTCGCCTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................AATCGCAAAACCGGAGCGCAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020001010
..........CTGCAGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................GCAAAACCGGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...............GTATACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................CTGCCGGAAATCGCAAAACCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..................................................GTGTGTATAA-------A-------ACCGTAATTAGAT...............................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
droYak3
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGTAAGGTGTGTATTA-------A-------ATCGTAATTAGATGTAATCAC----------------------AG---------------------CCCA-----GA---------------------TTATTG----------------------TCCCAA--TTTGTGCTGTA-------------------------------------------------------------CCATGTA-AATATCTAATTTTCCCAACAATTAGCGGCTTT-TCTCAGC-TTTTA------------CG--TGTGT----TTT-ACCG-----AGCTAATCTCGCTTTGCT---CT-CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............AGTATACTGCCGGAAATCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301000020000
..............AGTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201100000000
.................ATACTGCCGGAAATCGCAAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................T---CT-CTGCCAGTGTTGCCAGCG........................................2111.00101000000000
..................................AAAACCGGAGCGTAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...............GTATACTGCCGGAAATCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............GTATACTGCCGGAAATCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............AGTATACTGCCGGAAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............AGTATACTGCCGGAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
........................................................................................................................................................................................................................................................................................................AATTTTCCCAACAATTAGCGGCTC.......................................................................................................................................2411.00100100000000
..AAACCGTTCTGCAGTATACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCTAATCTCGCTTTGCT---CT-CTGCCAG...................................................2611.00101000000000
..........................GAAATCGCAAAACCGGAGCGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.CAAACCGTTCTGCAGTATACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CT-CTGCCAGTGTTGCCAGCGCACGC...................................2511.00100000010000
droEug1
TCAAACCCTTCTGCAGTATACTGCCAGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA-------A-------CCTTTTTTCTAATG--ATCAA----------------------AG---------------------TCTAT----GG---------------------TAATAG----------------------GCATTA--TTTG-GGTGTT-------------------------------------------------------------TCATTAA-AAGCTCAAATATGTCGAATAATTTGCGGCTTT-TTTATG--TTGTA------------CG--TGTAT----CTT-ACCG-----AGCTAATCTCCCCCTACC----T-TTGCCAGTGTTGCCAGCGCACGCGTTT-CGTG--GTTGCTTTCACTTGTC---AAA-ASizeHit CountTotal NormTotal
No Reads
droBia1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATAA-------C-----AAGCGTTGATTCGAGGG--TTAA----------------------AG-------------------TT-CTC-----GA---------------------GAATGC--------------------A-TCGCAA--GTG-TGGTGTC-------------------------------------------------------------CCCAGAA-ATGTTTTAAGCAGTGTGGAAACTAGCGGTCTT-TCTGCGT-TTT--------------TG--TGAGT----TTTCCCTGAAGTGAGCTAATCTC--TCAACT----T-TGGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAA--SizeHit CountTotal NormTotal
No Reads
droTak1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATGA-------A-----AATCCTTAATTCAATAG--ACAA----------------------AA-------------------TACCC------TA---------------------GAGTCT----------------------CCCCAA-AGTG-TGGTGTT-------------------------------------------------------------TCATGAA-ATGCACAAATTTCTCTAACAATTAGCGGCCTT-CCTTGGT-TT--A------------CG--TGTGTGT--TTT-CCTGA----GGGTTATCTCCCCCGACT----T-TGACCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAA-ASizeHit CountTotal NormTotal
No Reads
droEle1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCAGAGCGCAAGGTGTGTATAA-------A-------TCTGTAATTTAATATG-CCAA----------------------AG--------------------GTCTT-----GG---------------------CAGTT-----------------------TCCCAACAGTGC-TGTGTT-------------------------------------------------------------TCTTGTA-A--TTAAAATTTGGCTTACAATTAGCGGCTTT-TCTCCGTGTTTAA------------CG--TGTGTGTTTTTT-TCTG-----AGGTAATCTCCCCCCACT----T-TTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotal
No Reads
droRho1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA-------A-------TCTTTATTTTAAT--AAGCAA----------------------AA-------------------CGTCTA-----GG---------------------GA-TTT----------------------TCCCAACAATGC-AGTGTT-------------------------------------------------------------TGGTGTA-A--TTCGCATCTGGTGTTCAATTAGCGGCTTT-TCACCGT-TTTTA------------CG--TGTATAA--TTT-GCCGA----AGTTAATATACCCCTACT----T-CTGCCAGTGTTGCCAGCGCACGAGTTT-TAGT--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotal
No Reads
droFic1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA-------A-------TTTGAAGTTAAATTTTAA--------------------------G------GCAATG---------TGTG-----CG---------------------GAGTTT----------------------TTCCACCTGTAT-AGTCAT-------------------------------------------------------------T--TGTA-AAGTTTGATTTTGACAGATAATTAGCGGCTTT-TCTCTG--TTTTA------------CG--TGTGT----TTTTTCGG-----AGGCAATCTCCCCCTACT----C-TGACCAGTGTTGCCAGCGCACGCGTTT-TATG--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotal
No Reads
droKik1
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA-------A-------TCTGTAATTTAATATAA--------------------------------GA-------------CT-TATTCTTTGGCTTAAGTAAGG-----------------------------------------------------AGTTCCCTGAGTCTGCGTTGAGTAAATAACCACATTCAATT-----AAAT------AATTATGCACTATTTT-C-TT-GTGATTTGTA--ATAATT---TTCTAC-------------------------------GAGT----TT---------------------CCCCTACATGCAT-CTGCCAGTGTTGCCAACACACGCGTTT-GGTG--GTGGCTTTCACTTGTA---GAAAASizeHit CountTotal NormTotal
No Reads
droAna3
TCAAGCCTTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTACCATTATAACTAA-----CTAATAAGTATTAAGTGA----------------------AG---------------------TCCA-----GT---------------------AACAT-TTTTTGTGGTAGTGTCTTT-AA--CGA-AA----------------------------------AA------------G--------------TG---------------------CATTTTGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTTCT------------GC--TGCCC----CTT-ACCC------------CTCCCCCTGAG---ACCAGTCCAGTGTTGCCAGCGCACGG--------G--GTGGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................ATACTGCCGGAAATTGCAAAGCCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............GTATACTGCCGGAAATTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............GTATACTGCCGGAAATTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............AGTATACTGCCGGAAATTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................ATACTGCCGGAAATTGCAAAGCCCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............AGTATACTGCCGGAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...............GTATACTGCCGGAAATTGCAAAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................ATACTGCCGGAAATTGCAAAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
............................AATTGCAAAGCCCGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TCAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTACCATCAAAACTGA-----ATAATAAGTATTAAGTAA----------------------AG---------------------TCTA-----GA---------------------AACAT-TTTTTGTGGTAGTGTCTTTGAA--AAA-AAG--------------------------------------------------------------TG---------------------CAATTTGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTT--------------CGTCTCCCT----ATT-ACCC----------------CCTCCCCCTCAG-TGTTCAGTGTTGCCAGCGCACGG--------G--GTTGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotal
No Reads
dp5
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA-------T-------A-------TAGTTGTAACTAA----------------------AGTTTAAG-------------TT-CAATGTTAGGAAGATGTGGGGA---------GAGTG--------------------GAA--TGA-AAG--------------------------------------------------------------TGATTTGTTTCATTTT-A-GC-TTAATTTGTTTTATATTTAGCGGCCGT-------------------------------GCGT----TTA-AC-----------------AATTGGTC---GG-CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................TATACTGCCGGAAATTGCAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................CTGCCGGAAATTGCAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................TAAG-------------TT-CAATGTTAGGAAGAT..........................................................................................................................................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................GT-------------------------------GCGT----TTA-AC-----------------AATTGGTC---GG-..........................................................2111.0010100000000
..............................TTGCAAAGCCCGAGCGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................AGGAAGATGTGGGGA---------GAGTT--------------------.................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................TTAGGAAGATGTGGGGA---------GAGT......................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................GGA---------GAGTG--------------------GAA--TGA-AAG--------------------------------------------------------------TGA....................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGTGTTGCCAGCGCACG....................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................ATTTGTTTTATATTTAGCGGC.........................................................................................................................................2111.0010000001000
...............................TGCAAAGCCCGAGCGCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................CGT-------------------------------GCGT----TTA-AC-----------------AATTGGTC---G............................................................2111.0010100000000
.............................ATTGCAAAGCCCGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................GTG--------------------GAA--TGA-AAG--------------------------------------------------------------TGATTTGTT..............................................................................................................................................................................2111.0010000001000
..........................................AGCGCAAGGTGTGTATAA-------T-------A-------T...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................................................................................AA----------------------AGTTTAAG-------------TT-CAATGTTAG................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............GTATACTGCCGGAAATTGCAAAGCCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
...............................................................................................................................................................................................................................................................................................................TTTATATTTAGCGGCCGT-------------------------------GC.....................................................................................................2011.0010100000000
.........................GGAAATTGCAAAGCCCGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................GT----TTA-AC-----------------AATTGGTC---GG-CTG.......................................................2011.0010100000000
...AACCCTTCTGCAGTATACTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................TTTAGCGGCCGT-------------------------------GCGT----TTA-AC-----------------........................................................................2111.0010100000000
........................................................................................................................TTTAAG-------------TT-CAATGTTAGGAAA............................................................................................................................................................................................................................................................................................................2111.0010000001000
.................ATACTGCCGGAAATTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................TGCAAAGCCCGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..............AGTATACTGCCGGAAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................TTGCAAAGCCCGAGCGCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA-------T-------A-------TAGTTGTAACTAA----------------------AGTTTAAG-------------TT-CAATGTTAGGAATATGTGGGG----------GAGTG--------------------GAA--TGA-AAG--------------------------------------------------------------TGATTTGTTTCATTTT-A-GC-TTAATTTGTTTTATATTTAGCGGCCGT-------------------------------GCGT----TTA-AC-----------------AATTGGTC---GG-CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTC---AAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................AATTGCAAAGCCCGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
..............AGTATACTGCCGGAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC---------GGCTTTCACTTGTC---.....1812.002200000
.........................GGAAATTGCAAAGCCCGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........TGCAGTATACTGCCGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGTTC---------GGCTTTCACTT...........2111.001001000
..........................................................................................................................................................................................................................................................................................................TTTGTTTTATATTTAGCGGCCG.......................................................................................................................................2211.001100000
.............................................................................................................................G-------------TT-CAATGTTAGGAATATGTG.......................................................................................................................................................................................................................................................................................................2121.002000002
..................................................................................................................................................................................................................................................................................................................................................................GT----TTA-AC-----------------AATTGGTC---GG-CTGCCAGTGG................................................2711.001100000
droWil2
TCAAACCCTTTTGCAGTATATTACCTGAAATTGCAAAGCCGGAGCGTAAGGTGCGTATGA-------A-------AA-GT-ATTAAATATTGATAA----------------------AA-------CGATTTGCATTG-GAGTG-----TT----------TAGCTTTCCTAG--------------------------------A--TTGCT-CTGCA------------------TATT-TTTGACATACATAT-----ATGTA--------------TAATATATATGTTTTTAAT-ATTTGCCAATTAGT----------------TAAGTGTCTGTTTTTTGG-TTTCTT----TTC-ACCG------------------TCAC----CA-CTGCCAGTGTTACCATCGCTTACGTTT-TATTCTCTTGCTTTCACTTGTCGGAAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................TACCTGAAATTGCAAAGCCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................25134.0034034000
.........................TGAAATTGCAAAGCCGGAGCGTAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2617.00707000
..................TATTACCTGAAATTGCAAAGCCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2816.00615000
................TATATTACCTGAAATTGCAAAGCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000
.....................TACCTGAAATTGCAAAGCCGGAGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000
................TATATTACCTGAAATTGCAAAGCCGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2814.00404000
.....................TACCTGAAATTGCAAAGCCGGAGCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................2713.00303000
..........................GAAATTGCAAAGCCGGAGCGTAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000
....................TTACCTGAAATTGCAAAGCCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
......................ACCTGAAATTGCAAAGCCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000
...............................TGCAAAGCCGGAGCGTAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201010
.....................TACCTGAAATTGCAAAGCCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201100
...............................TGCAAAGCCGGAGCGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201010
.....................TACCTGAAATTGCAAAGCCGGAGCGTAA......................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000
...............GTATATTACCTGAAATTGCAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
........................CTGAAATTGCAAAGCCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
...............GTATATTACCTGAAATTGCAAAGCCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2812.00210010
.........................TGAAATTGCAAAGCCGGAGCGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201010
.........................TGAAATTGCAAAGCCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000
...........TGCAGTATATTACCTGAAATTGCAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
...........................AAATTGCAAAGCCGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................CTGAAATTGCAAAGCCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...................ATTACCTGAAATTGCAAAGCCGGAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
................TATATTACCTGAAATTGCAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................GAAATTGCAAAGCCGGAGCGTAA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................TATTACCTGAAATTGCAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......CTTTTGCAGTATATTACCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TATTCTCTTGCTTTCACTTGTCGGA.....2711.00100010
...............GTATATTACCTGAAATTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................AATTGCAAAGCCGGAGCGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............GTATATTACCTGAAATTGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
................TATATTACCTGAAATTGCAAAGCCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........TTTGCAGTATATTACCTGAAATTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..........................................................................................................................................................................................................................................................................................................AT-ATTTGCCAATTAGT----------------TAAGTGT.....................................................................................................................2311.00100010
...............GTATATTACCTGAAATTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........TGCAGTATATTACCTGAAATTGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
............................AATTGCAAAGCCGGAGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............GTATATTACCTGAAATTGCAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........................................................................................................................................................................CTAG--------------------------------A--TTGCT-CTGCA------------------TATT-T...................................................................................................................................................................................................................2011.00110000
.............................................................................................................................................................................................................................................................................................................ATTTGCCAATTAGT----------------TAAGTGTCT...................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................AT-ATTTGCCAATTAGT----------------TAAGT.......................................................................................................................2111.00100010
..............AGTATATTACCTGAAATTGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAA-------G-------TA-TTGATT----------AAGAGTATA----------------T-------TTATTAGCAATG--GTTA-----AAT---------TAACGT------------------G------GC--------AAA-------------------------------------AG------------CTGTGATTTATAAAGTG--------------------TGT-TTTTTTTTTTTTTTGG----------------TTTGG------------TT--TGTGC----GTT-TTCG-----TATCGTATTTGCTTTGCT------GTGCCAGTGTTGCCAGCGCACGCGTTATTTTT--TTTGCTTTCACTTGTC---AGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............GTATACTGCCTGAAATTGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTTTTTGG----------------TTTGG------------TT--TGTGC----...............................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...........................AAATTGCAAAGCCCGAACGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............AGTATACTGCCTGAAATTGCAAAGCCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TTTGG------------TT--TGTGC----GTT-TTCG-----TA................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................ATACTGCCTGAAATTGCAAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TTCG-----TATCGTATTTGCTTTG..................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
........................CTGAAATTGCAAAGCCCGAACGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
...............................TGCAAAGCCCGAACGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.......................CCTGAAATTGCAAAGCCCGAACGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
..............AGTATACTGCCTGAAATTGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGG----------------TTTGG------------TT--TGTGC----GTT-TTC........................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................T--TGTGC----GTT-TTCG-----TATCGTATT.........................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTGG----------------TTTGG------------TT--TGTGC----GTT-TTCG-----..................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TTGG----------------TTTGG------------TT--TGTGC----GTT-TC.........................................................................................2120.501000000000000000100000000000000000000000000000000000000000000000
droMoj3
TCAAGCCCTTCTGCAGTATACTGCCAGAAATTGCAAAGCCAGAGCGCAAGGTATGTAGAATTACCAAAAGACA-----GCTATATGTAT-----------ATATTTCTTTACGT---------------------------ACTA-----AAT---------TACAGT------------------G------TC--------AAA-------------------------------------AA------------GTGTAATTTGTGATGAA-------CT---------------------------CTTTTGGTTTT-TCGGTG--TTTAA------------TT--TGCGT----TT---ATA-----TATCGTATTTGATTTGCA---GT-GCACCAGTGTTGCCAGCGCACGCGTTT-TTTAGGTTTGCTTTCACTTGTC---GGTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................AATTGCAAAGCCAGAGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.........................AGAAATTGCAAAGCCAGAGCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................ATGAA-------CT---------------------------CTTTTGGTTTT-TCGG.................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................TTGTGATGAA-------CT---------------------------CTTTTGGT.........................................................................................................................................2011.001000010
......................................................................................................................................................................GT------------------G------TC--------AAA-------------------------------------AA------------GTGTAATTTG............................................................................................................................................................................................2011.001000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCGTTT-TTTAGGTTTGC...................2211.001100000
...AGCCCTTCTGCAGTATACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................GAAATTGCAAAGCCAGAGCGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................AAT---------TACAGT------------------G------TC--------AAA-------------------------------------AA------------GT....................................................................................................................................................................................................1911.001100000
...................ACTGCCAGAAATTGCAAAGCCAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
TCAAGCCCTTTTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGAGTAAAC----------------CCAGATATATATATTGTTAA----ATA----TTTATATGAAAAG-------------------TTGCT-----------------------------------------------------------AAA-------------------------------------AC------------CTAAGATTTATGCTGTG-------CT-TGTG-AAATTTGAG--------------------------------TTTAA------------TG--TGTGC----ATT-TCAA-----TGTCGTTTTTGGTACGCT---GG-GCGCCAGTGTTGCCAGCGCGCACGTTT--------TTGCTTTCACTTGCC---AGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................AA------------TG--TGTGC----ATT-TCAA-----TG................................................................................1811.00110
...............GTATACTGCCGGAAATTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 05:16 PM