ID:

dsi_27298

 Coordinate:

x:1213370-1213519 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.8 -26.2 -26.2 -26.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. x:1212425-1212450 -
  2. x:1212647-1212672 -
  3. x:1212980-1213005 -
  4. dsi_27298  x:1213380-1213405 -
  5. dsi_27298  x:1213446-1213471 -
  6. x:1217532-1217557 -
star
  1. x:1212425-1212450 -
  2. x:1212647-1212672 -
  3. x:1212980-1213005 -
  4. dsi_27298  x:1213380-1213405 -
  5. dsi_27298  x:1213446-1213471 -
  6. x:1217532-1217557 -

Sense Strand Reads

CTGGTCTGGAAGCTGCCTTGGAGGTCAAAGGGGACTTTTCGGCTATCGACTCTCGCCTAGATTCTTCCTTGGACTTCTCAGCTTCATCCTTTACACTTTCTGCAACGGATGCTGGTCTGGAAGCTTCCTTAGAGGCCAAAGGTGATTCTGGTTCGCAGTCACTTTCTGCAACGGATGCTGGTCTGGAAGCTTCCTTAGAGGCCAAAGGTGATTCTTCCTTAGACTTCTCAGCTTCGTCCTTAAGACTTTC
**************************************************************************************************...((..(((((...........(((.(((......((..(((((((..(((.....))))))))))..))...))).))).)))))...))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 M023
head
...........................................TATCGACTCTCGCCTAGATTCTTCCTT.................................................................................................................................................................................... 27 0 2 1.50 3 2 0 0 0 1 0 0 0
.TGGTCTGGAAGCTGCCTTGGAGGTCAA.............................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..............GCCTTGGCGGTCAGAGGCGA........................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 1 0 0 0 0
...........................................TATCGACTCTCGCCTAGATTCTTCCTAT................................................................................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0
...............GCTTGGAAGTCAAAGGGGAATT..................................................................................................................................................................................................................... 22 3 4 0.50 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................TCTGCAACGGATGCTGGTCTGGAAGC............................................................ 26 0 6 0.50 3 2 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCTTCCTTAGACTTCTCAGC.................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0
..................................................................................................TCTGCAACGGATGCTGGTCTGGAAGC.............................................................................................................................. 26 0 6 0.50 3 2 1 0 0 0 0 0 0
..............GCCTTGGCGGTCAGAGG........................................................................................................................................................................................................................... 17 2 12 0.33 4 0 1 0 2 1 0 0 0
..................................................................................................................................................................................TGGACTGGAAGCTTCCATA..................................................... 19 2 7 0.29 2 2 0 0 0 0 0 0 0
................................................................................................................TGGACTGGAAGCTTCCATA....................................................................................................................... 19 2 7 0.29 2 2 0 0 0 0 0 0 0
.............TGCCTTGGCGGTCAGAGGCG......................................................................................................................................................................................................................... 20 3 7 0.29 2 0 0 1 0 1 0 0 0
.............TGCCTTGGCGGTCAGAGG........................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0
....TGTGGAAGCTGCCTT....................................................................................................................................................................................................................................... 15 1 19 0.21 4 0 0 4 0 0 0 0 0
...........................................................................................TACACTTTCTGCAACGGATGCTGGTCTGGA................................................................................................................................. 30 0 5 0.20 1 0 1 0 0 0 0 0 0
...........................................................................................TACACTTTCTGCAACGGATGCTGGCC..................................................................................................................................... 26 1 6 0.17 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................TGCTGGTCTGGAAGCTTCCTTAG.................................................... 23 0 6 0.17 1 0 0 1 0 0 0 0 0
....TCTGGAAGCGGCCTTCGA.................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
.............................................................................................................TGCTGGTCTGGAAGCTTCCTTAG...................................................................................................................... 23 0 6 0.17 1 0 0 1 0 0 0 0 0
....TGTGGAAGCTGCCTGGG..................................................................................................................................................................................................................................... 17 2 20 0.15 3 0 0 3 0 0 0 0 0
.......................................................................................CCTTTACACTTTCTGCAACGG.............................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0 0 0 0
....TGTGGAAGCTGCCTTG...................................................................................................................................................................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0 0 0
............................................................................................AAACTTTCAGCAACGGAT............................................................................................................................................ 18 2 17 0.12 2 0 0 0 0 0 2 0 0
.................................................................CCCGTGGACTTCTCCGCTT...................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 2
............................................................................................AAACTTTCAGCAACGGATC........................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 1 0 1
...................................................................................................................................................................TTCTGCAACGGATGCTGGGCC.................................................................. 21 2 10 0.10 1 0 0 0 0 0 1 0 0
.................................................................................................TTCTGCAACGGATGCTGGGCC.................................................................................................................................... 21 2 10 0.10 1 0 0 0 0 0 1 0 0
.............TGCCTTGGCGGTCAGAGGC.......................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 1 0 0 0 0 0
..........................AAAGCGGACTTCTGGGCTA............................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................CTGGACTGGAAGCTTC......................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................GACTTTCGGCAACGGAT.......................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................................................CTGGACTGGAAGCTTC........................................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0
.........AAGCTGCCTCGGAGGA................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
..GCTTTGGAAGCTGCCT........................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................ACTCTCTGCAACGGA............................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................GACTTTCGGCAACGGAT............................................................................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................................................................ACTCTCTGCAACGGA........................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0
............................................................................................AAACTTTCTACAACGGA............................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

GACCAGACCTTCGACGGAACCTCCAGTTTCCCCTGAAAAGCCGATAGCTGAGAGCGGATCTAAGAAGGAACCTGAAGAGTCGAAGTAGGAAATGTGAAAGACGTTGCCTACGACCAGACCTTCGAAGGAATCTCCGGTTTCCACTAAGACCAAGCGTCAGTGAAAGACGTTGCCTACGACCAGACCTTCGAAGGAATCTCCGGTTTCCACTAAGAAGGAATCTGAAGAGTCGAAGCAGGAATTCTGAAAG
************************************************************...((..(((((...........(((.(((......((..(((((((..(((.....))))))))))..))...))).))).)))))...))************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.....................................................................................................................................................................................................................GAAGGAATCTGAAGAGTC................... 18 0 2 1.00 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................AGACTAAGCGTCAGT......................................................................................... 15 1 19 0.63 12 8 0 2 2 0 0 0 0 0
................................................TGAGAGCGGATCTAAGAAGGA..................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.ACCACACCTTCGACGGA........................................................................................................................................................................................................................................ 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGAAGAGTCGAAGCAGGAA......... 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................CTGAAGAGTCGAAGCAGGAATT....... 22 0 3 0.33 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................CCAAGCGTCAGTGAGAGT................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTCGAAGGAGTCGCCGTTTTCC.......................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................................TTCGAAGGAGTCGCCGTTTTCC............................................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CTACGACCAGACCTTCGAAGGAATCTC.................................................. 27 0 4 0.25 1 0 0 0 0 0 1 0 0 0
...........................................................................................................CTACGACCAGACCTTCGAAGGAATCTC.................................................................................................................... 27 0 4 0.25 1 0 0 0 0 0 1 0 0 0
....................................................................AATCTGAAGAGTCGAAGTAGGAAGT............................................................................................................................................................. 25 2 5 0.20 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATCTGAAGAGTCGAAGTAGGAAGT....... 25 2 5 0.20 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................CCAATAGGACCAAGCGACAGT......................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0
...................................................GAGCGGAACTAAGAAGGAACCTGAAGAG........................................................................................................................................................................... 28 1 6 0.17 1 0 0 0 0 0 0 0 0 1
.....................................................................ACCAGTAGAGTCGAAGCAGGA................................................................................................................................................................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACCAGTAGAGTCGAAGCAGGA.......... 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................AAGGAATCTCCGGGTT............................................ 16 1 9 0.11 1 0 0 0 0 0 0 0 1 0
............................................................................................................................AAGGAATCTCCGGGTT.............................................................................................................. 16 1 9 0.11 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................AAGACTATGCGTCAGT......................................................................................... 16 2 20 0.10 2 0 0 0 1 1 0 0 0 0
..................................................................................................................................................AGACCAAGCGTCGGT......................................................................................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
.ATCACACCTTCGACGGA........................................................................................................................................................................................................................................ 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CAGTCGAAGCAGGAA......... 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0
.AGCACACCTTCGACGGA........................................................................................................................................................................................................................................ 17 2 17 0.06 1 1 0 0 0 0 0 0 0 0
...................................GAAAGCGGATAGCTCAGAG.................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.......CCTTAGACTGAACCTCC.................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 05:05 AM