dsi_27290

five_prime_UTR [2r_12575180_12575194_+]; CDS [2r_12575195_12575667_+]; exon [2r_12575180_12575667_+]; intron [2r_12571251_12575179_+]

Name	Class	Family	Strand
(CATATA)n	Simple_repeat	Simple_repeat	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GATGGAAATGACGAATGTTTGACGAGGGTTTCAGATAGCTACGTACATATACAGATACATATATGTATGCATATGGTTTCTCTGTGGGGTCAGGAGGAAGCAAAGGGGAACGGAAGTCGGGACACGGTTCGCTACTGATCACTCAATTACCATTCGATAGCGAAAAGCAAAACTCTAAGCGGCATTGTCTACCACGACAGGTGCTCCCTCCATAGATGATGCAGCCGCTGACGATGCGGAGTTGGCTGGC ************************************************.........((((((....))))))((((((((.((...((....))...)).))))))))....((((((......(((((((.(((...............))).)))))))..((((..((......))..))))...)).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR902008 ovaries	M023 head	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
................................................................................................................................................................................................................TCCATAGATGATGCAGCCGCTGACGA................	26	0	1	7.00	7	0	5	1	0	1	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGC...................................................................	15	0	2	5.50	11	11	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTGTTG...............................................................	17	2	8	4.75	38	38	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCAT.................................................................	15	0	1	2.00	2	2	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTATT................................................................	17	1	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................................................................................................TAAAACTCTAAGCGGCAT.................................................................	18	1	1	2.00	2	2	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCCT.................................................................	15	1	4	1.50	6	6	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTATTGT..............................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGGATTG...............................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCAGCCGCTGACGATGCGGAGTTG......	25	0	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGTAT.................................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCCTT................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTAT.................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................GCAAAACTCTAAGCG.....................................................................	15	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCGTT................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCATCG...............................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCCGCTGACGATGCGGAGTTGGA....	24	1	1	1.00	1	1	0	0	0	0	0	0	0
..................................................................................TGTGGCGTCAGGAGGA........................................................................................................................................................	16	1	1	1.00	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCATC................................................................	16	1	3	1.00	3	3	0	0	0	0	0	0	0
.....................................................................................................................................................................AGCAGAACTCTAAGCGG....................................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTGTTGT..............................................................	18	2	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTGTTGT..............................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGGATT................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCATT................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTGGTGTC.............................................................	20	3	1	1.00	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................AAAAGCAAAACTCTAAGCGGC...................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................................AGCACAACTCTAAGCGG....................................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TGACGATGCGGAGTTGGCT...	19	0	1	1.00	1	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................TCCATAGATGATGCAGCCGCTGACGAAA..............	28	2	1	1.00	1	0	0	0	0	1	0	0	0
.................................................................................................................................................................GACGATCAAAACTCTAAGCGG....................................................................	21	3	1	1.00	1	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TCCTTCCATAGATGATGCAGCCGCTGACGA................	30	1	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCGTCG...............................................................	17	2	12	0.83	10	10	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGTA..................................................................	16	1	6	0.83	5	5	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTAT.................................................................	15	1	5	0.80	4	4	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTGTTGTA.............................................................	19	3	16	0.50	8	8	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GACGATGCGGAGTTGGCC...	18	1	2	0.50	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGCA..................................................................	16	0	2	0.50	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTAGTGT..............................................................	19	2	2	0.50	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGCCT.................................................................	16	1	2	0.50	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................CAAAACTCTAAGCGGT...................................................................	16	1	4	0.50	2	2	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGCG..................................................................	15	1	6	0.50	3	3	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTAATGTC.............................................................	19	2	2	0.50	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCATGG...............................................................	17	1	2	0.50	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGGGTTGTA.............................................................	19	3	10	0.50	5	5	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGGGTTGTA.............................................................	20	3	5	0.40	2	2	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTA..................................................................	15	1	8	0.38	3	2	1	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCCCTG...............................................................	17	2	3	0.33	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................AAGGAAAACTCTAAGCGGT...................................................................	19	2	3	0.33	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGGAGTTTCT............................................................	20	3	3	0.33	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................CACCAAAACTCTAAGCGG....................................................................	18	2	3	0.33	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CTGAAGATGCGGAGT........	15	1	3	0.33	1	0	0	0	0	0	0	1	0
..........................................................................................................................................................................AACTCTAAGCGGGAT.................................................................	15	1	3	0.33	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTGGTGTC.............................................................	19	3	12	0.33	4	4	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCAG.................................................................	15	1	9	0.33	3	3	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGTATC................................................................	18	2	7	0.29	2	2	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGG...................................................................	15	1	12	0.25	3	3	0	0	0	0	0	0	0
.....................................................................................................................................................................ATCAAAACTCTAAGCGGT...................................................................	18	2	8	0.25	2	2	0	0	0	0	0	0	0
....................................................................................................................................................................AAGGAAAACTCTAAGC......................................................................	16	1	4	0.25	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGTTTTG...............................................................	19	2	4	0.25	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCGT.................................................................	15	1	4	0.25	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................ACAAAACTCTAAGCGG....................................................................	16	1	5	0.20	1	1	0	0	0	0	0	0	0
..........................................................................................................GGGACGAAAGTCGGGAC...............................................................................................................................	17	2	10	0.20	2	0	0	0	0	0	0	0	2
..........................................................................................................................................................................AACTCTAAGCGGCGTTGGTT............................................................	20	3	5	0.20	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTCTTG...............................................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CGCTGACGACGCGCAGTCGG.....	20	3	5	0.20	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCAACGT..............................................................	18	2	6	0.17	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTGTTGCC.............................................................	19	3	13	0.15	2	2	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTATA................................................................	16	2	20	0.15	3	3	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCCCT................................................................	16	2	20	0.15	3	3	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGAA..................................................................	15	1	14	0.14	2	2	0	0	0	0	0	0	0
...................................................................................................................................................................TAAGCGAAACTCTAAGCGGT...................................................................	20	3	7	0.14	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGCCCT................................................................	17	2	7	0.14	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................CCAGTCGATAGCGAAA.....................................................................................	16	1	7	0.14	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCTT.................................................................	15	1	15	0.13	2	2	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGA...................................................................	15	1	16	0.13	2	2	0	0	0	0	0	0	0
........................................................................................................GGGGAAGGGAAGTCGGCA................................................................................................................................	18	2	8	0.13	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGGAGT................................................................	17	2	9	0.11	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGCGTC................................................................	17	2	9	0.11	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTTTTGTGTA...........................................................	21	3	9	0.11	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTATTA...............................................................	17	2	18	0.11	2	2	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCCTGG...............................................................	17	2	9	0.11	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGGA..................................................................	15	1	9	0.11	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGCCAT.................................................................	15	1	10	0.10	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGTGTTCTC.............................................................	19	3	10	0.10	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCGCT................................................................	16	2	20	0.10	2	2	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGGATA................................................................	16	2	20	0.10	2	2	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCCTCGG..............................................................	18	3	20	0.10	2	2	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGGGTT................................................................	17	2	10	0.10	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCAATC...............................................................	17	2	11	0.09	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCAGTCGCTGACGTTACGG...........	20	3	12	0.08	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................GCTAAACTCTAAGCGGT...................................................................	17	2	13	0.08	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGAAT.................................................................	15	1	14	0.07	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGCTTTC...............................................................	18	2	14	0.07	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................AGGGAAACTCTAAGCGG....................................................................	17	2	14	0.07	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGTATC................................................................	17	2	14	0.07	1	1	0	0	0	0	0	0	0
.......................................................................................................AGGGGAACGGCAGACGGGT................................................................................................................................	19	3	15	0.07	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGCT..................................................................	15	1	15	0.07	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGCCATTA...............................................................	17	2	15	0.07	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................ACAAAACTCTAAGCG.....................................................................	15	1	16	0.06	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................AAAACTCTAAGCGGTCT.................................................................	17	2	18	0.06	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGCCAGTCTC.............................................................	19	3	19	0.05	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCAGCG...............................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0
............GAATGTTTTAAGAGGGT.............................................................................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0
..................................................................................................................CGTCGGGAGACGGTCCGC......................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1
........................................................................................................................................................................AAAACTCTAAGCGGGT..................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGGTT.................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCAGCAGCTGACGGTGCGA...........	20	3	20	0.05	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................AAACTCTAAGCGGGGT.................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACTCTAAGCGGCGTA................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0

CTACCTTTACTGCTTACAAACTGCTCCCAAAGTCTATCGATGCATGTATATGTCTATGTATATACATACGTATACCAAAGAGACACCCCAGTCCTCCTTCGTTTCCCCTTGCCTTCAGCCCTGTGCCAAGCGATGACTAGTGAGTTAATGGTAAGCTATCGCTTTTCGTTTTGAGATTCGCCGTAACAGATGGTGCTGTCCACGAGGGAGGTATCTACTACGTCGGCGACTGCTACGCCTCAACCGACCG ************************************************.........((((((....))))))((((((((.((...((....))...)).))))))))....((((((......(((((((.(((...............))).)))))))..((((..((......))..))))...)).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR902009 testis	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
......................................................................................................................................................GTAAGCTATCGCTTTTCGTTT...............................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................TTTCTACTACGTCGGCGACTG..................	21	1	1	2.00	2	0	2	0	0	0	0	0
...............ACAAACTACTCCCAAAGTC........................................................................................................................................................................................................................	19	1	1	1.00	1	0	0	1	0	0	0	0
.................AAAGTGCTCGCAAAGTCT.......................................................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................ACATGGTGCTGTCCAG...............................................	16	2	12	0.08	1	0	0	0	0	1	0	0
................................................................................................................................AGAGATGACTAGTGA...........................................................................................................	15	1	14	0.07	1	0	0	0	0	0	1	0
.............................................................AAACATACGTATGCCAA............................................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0
..........................................CAGGTATATGTCTATGTC..............................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1
...............................................................................................................................................................................................GGTGCTGTCCATGGGG...........................................	16	2	20	0.05	1	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:12574980-12575229 +	dsi_27290	GA-----------TGGAAATG------ACGAATGTTTGA------CGAGG------------GTTTC---AGA----TAGCTACGTACATATAC----------AGATACATATA-TGTATGCA--------TATGGTTTCTC--TGT-------------------------GGGGTCAGGAG---------GAAG-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATAGCGAAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCATTGTCT--AC---CAC--------GACAGGTG---CTCCC-------------------------TCCATAGATG---ATGCAGCCGCTGACGATGCGGA--------------GTTGGCTGGC-------
droSec2	scaffold_1:9408075-9408327 +		GA-----------TGGAAATG------ACGAATGTTTGA------CGAGG------------GTTTC---AGA----TAGCTACGTACATATACAGA----------TAC------CGTATGCATACATATATACGGTTTCTC--TGT-------------------------GGGGTCAGGAG---------GAAG-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATAGCGAAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCATTGTCT--AC---CAC--------GACAGGTT---CTCCC-------------------------TCCATAGATG---ATGCAGCCGCTGACGATGCGGA--------------GTTGGCTGGC-------
dm3	chr2R:11909183-11909443 +		GA-----------TGGAAATG------ACGAATGTTTGA------CGAGG------------GTTTC---AGA----TAGCTACGTACATATGCATATACATACATATAT-------GTATGTATACA----TATAGTTTCTT--TGT-------------------------GGGGTCAGGAG---------GAAG-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAT----CATTCGATAGCGAAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCATTGTCT--ACCACCAC--------GACAGGTG---CTCCA-------------------------TTCATAGATG---ATGCAGGCGCTGACGATGCGGA--------------GTTGGCTGGC-------
droEre2	scaffold_4845:13948877-13949108 -		GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GTTTC---AGA----TAGCAACGTACATATG----------TACATACATA-------------------TATGGTTTCTT--TCT-------------------------GGGGTGAGGAG---------GAAA-CAT------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATACCA-G----------------------------------------------------------------------AACTC-----TAAGCGGCATTGTCT--AC---CAC--------GACAGGTG---CTCCA-------------------------TTCAC-GATG---ATGCGGCCGCTGACGATGCGGA--------------GTTGGCTGGC-------
droYak3	2R:17073393-17073627 -		GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GTTTC---AGA----TAGCGACGTACATACA----------TACATATGTA-------------------TATGGTTTCCT--TCT-------------------------GGGGTCTGAAG---------GAAA-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATACCA-G----------------------------------------------------------------------AACTC-----TAAGCGACATTGTCT--AC---CAC--------AACAGGTG---CTCCA-------------------------TTCAC-GATG---ATGCGCCCGCTGACGATGCGGA--------------GTTGGCTGGC----AAC
droEug1	scf7180000409672:816274-816471 +		GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GCTTC---AGA----TAGTT---------------------------TG------------------------------TC--TC--------------------------GGGGGCAGTAG---------GAAA-CAA------AG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCAA--TTTC----CATTCGATACCA-A-----------------CC---------------------------------------------------AACTC-----TAACCGGCATTGTCT--GCT----C--------AACAGGTG---CTTCA-----------------------------C-GATG---ACGCGGCCGCTGACGATACGGA--------------GTTGGCTG---------
droBia1	scf7180000301506:2848427-2848666 +		GA-----------TGGAAATG------ACGAAT--CTGA------CGAGGGCGAGGGCGAGGGCTCCTATAGATAGTTAGTT---------------------------TG------------------------------TC--TCG-------------------------TCTGACACGAG---------GTAG-CAGGGGGGATC------GGG----AGCGGAAGCC--GGGACACGC-----TTCGCTACTGATCACTCAA--TTCC----CATTCGATACCA-AGA---------------GC---------------------------------------------------AACTC-----TAACCGGCTCTGTCT--GCT----C--------GACAGGTG---CTCCAC-------------GATTCCACGA--TGAC-GATG---ACGCGGCCGCTGACGAAGCGGA--------------GTTGGCTGGC-------
droTak1	scf7180000415795:653991-654171 -		GA-----------TGGAAATG------TCGAAGGT-----------GAGG------------GTCTC---AGA----A-------------------------------------------------------------------------------------------------------GGG---------G-----AA------GG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCAA--TTCG----CATTCGATAGTA-A------------------------------------------------------------------------C---------CGGGGTATTGTCT--GCT----C--------CACAGGTG---CTCCAC-------------GAATCCACGAATCCAC-GATG---ACGCGGCCGCTGACGATGCGGA--------------GTTGGCTGAC-------
droEle1	scf7180000491107:913154-913388 +		GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GGTTC---AGAG--ATTGTT---------------------------TG------------------------------ACTTT-GACTGAGT---------GGGTGGGTG-------GGTGGCAACAGGGGAATCCAA------GG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTCC----CATTCGATGCCA-G-TGTATCATACTCGTACCC---------------------------------------------------AACTCATACTCAAGCGGCATTGTCT--GTT----C--------AACAGGTG---CTCCA-----------------------------C-GATG---ATGCGG---------AGTTGGA--------------GTTGGCTGGC-------
droRho1	scf7180000779911:189918-190132 -		GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GGTTC---AGA----TTGTT---------------------------TG------------------------------A---GGT------------------------GGGGGGCAGGTGGT--------AAT-CAA------AG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCATTCAA--TTCC----CATTCGATACCA-ACT----------CCAAC--------------------------------------------------TTCAACTCCAACCCAACCGTCATTGTCT--GCT----C--------CACAGGTG---CTCTA-----------------------------C-GATG---ACGCGGCCGCTGACAATGCGAA--------------GTTGGCTGGC-------
droFic1	scf7180000453948:1156912-1157134 +		GA-----------TGGAAATG------GCGAATGTTTGA------CGGGG------------TTTTC---AGATACATAGCT---------------------------TG--------------------------TATTTT--CGT-G-GAGGAGGAGGAGGGGGAGGG-G-------GTTGGC--------AAA-CAA------AG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCAA--TTCCGCCCGATTCGATAGCA-------------------------------------------------------------------------ACTC-----AACTCGGCATTGTCT--GCT----C--------CTCAGGTG---CTCCA-----------------------------C-GATG---ACGCGGTCGCTGACGATACGGA--------------GTTGGCTG---------
droKik1	scf7180000302476:2599914-2600121 +		GA-----------TGGAAATG------ACGAATGTTTGA------CGATG------------GTTAC---AGA----TTGTT---------------------------TA------------------------------T---AGT-G-GAGTAGGGAACAGGGGAG-------------------------AGA-CAC------GGGTACTCGGGGGC-AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCCA--TTCC----GATTCGATTCCA-A------------------------------------------------------------------------C----------TCAGCATTGTCTCTGCT----CCCATACATGACAGGTGGTGCTATA-----------------------------C-GACGATGA---------------CGCTTC--------------GTTGGTTGGC-------
droAna3	scaffold_13266:15483391-15483589 -		GA-----------TGGAAATGGAAATTACGAAT--CAGAGTCAAAT----G--------------------------------------------------------------------------------------------------------------------------------CGGGG---------CAAAACTA------GGG---CTGGG----GGCGGAAGCCATGGGACACGG-----TTCGCTTCTGATCACCCAA--TGCT----GAT--GATT-----------------------------------------------------------------------------------------CCGCAATGTCT--GCT--CTC--------GACAGGTG---CTCCCCC-TATCTGGCTCCAACTCCCTGT--CTAC-GATG---ACGCAGCCGCCGACGATACGGG--------------GCTGGATGGC-------
droBip1	scf7180000396547:1563965-1564175 +		GGCGGAGACAAGATGGAAATGGAAATTACGAAT-TCAGAGTCAAAT----G--------------------------------------------------------------------------------------------------------------------------------CGGGG---------GAAA-CTA------GGG---TCGGG----GGCGGAAGCCATGGGACACGG-----TTCGCTTCTGATCACCCAA--TGCT----GAT--GATTC-----------------------------------------------------------------------------------------CACAATGTCT--GCT--CTC--------GACAGGTG---CTCCCCCTTATCCGGCTCCAACTCCCTGG--CTAC-GATG---ACGCAGCCGCCGACGATACGGG--------------GCTGGCTGGT-------
dp5	3:16343522-16343769 +		TA-----------TAGAAATG------GAAATGGTAGTA------CGT--------------------------------------GGAGATGCGTA----------------TGA-------------------------------------------------------CG--------------------------------G---G---G----TGCAGACGGAAGCG--TGGACACGGTTCGGTTCGCTTCTGATCACTCGTGGTTACACCA-------------GAA---------------GCGAAGCGATGAACGAACGAACCAACGAAAGAACGAACATCTTGTCTGATTAATATTC-----TGACTCACATTGTCT--TCT----C--------GACAGGTG---CTCAAA---------------------------AA-GATG---A------CGCTGACGGTGCGGAGAGACCGCGAGCGATTCGGCTGGAGTGCGCT
droPer2	scaffold_4:419665-419912 -		TA-----------TAGAAATG------GAAATGGTAGTA------CGT--------------------------------------GGAGATGCGTA----------------TGA-------------------------------------------------------CG--------------------------------G---G---G----TGCAGACGGAAGCG--TGGACACGGTTCGGTTCGCTTCTGATCACTCGTGGTTACACCA-------------GAA---------------GCGAAGCGATGAACGAACGAACCAACGAAAGAACGAACATCTTGTCTGATTAATATTC-----TGACTCACATTGTCT--TCT----C--------GACAGGTG---CTCAAA---------------------------AA-GATG---A------CGCTGACGGTGCGGAGAGACCGCGAGCGATTCGGCTGGAGTGCGCT
droVir3	scaffold_12875:17349568-17349578 +		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTG---CTCGAA------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:10661579-10661629 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------GACAGGTG---CTTAA-----------------------------A-GATG---TCATTGTCCACGCTGGCGTTGG--------------ATTTGTTGGT-------
droGri2	scaffold_15245:16863472-16863517 +		TT-----------ATATATAT------ATATA-----------------------------------------------------TATATATA----------TATATATATATA-TGTATATG--------TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GA-----------TGGAAATG------ACGAATGTTTGA------CGAGG------------GTTTC---AGA----TAGCTACGTACATATAC----------AGATACATATA-TGTATGCA--------TATGGTTTCTC--TGT-------------------------GGGGTCAGGAG---------GAAG-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATAGCGAAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCATTGTCT--AC---CAC--------GACAGGTG---CTCCC-------------------------TCCATAGATG---ATGCAGCCGCTGACGATGCGGA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAGATG---ATGCAGCCGCTGACGA.....................................	26	1	7.00	7	0	0	0	0	0	0	5	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------AACTC-----TAAGCGGC....................................................................................................................................	15	2	5.50	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACTC-----TAAGCGGCAT..................................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCGCTGACGATGCGGA--------------GTTG.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCAA-------------------------------------------------AACTC-----TAAGCG......................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCTGACGATGCGGA--------------GTTGGA...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACTC-----TAAGCGGCATC.................................................................................................................................	16	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACTC-----TAAGCGGCATT.................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGC....................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGATGCGGA--------------GTTGGCT..........	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAGATG---ATGCAGCCGCTGACGAAA...................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCGGA--------------GTTGGCC..........	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------AACTC-----TAAGCGGCA...................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CAA-------------------------------------------------AACTC-----TAAGCGGT....................................................................................................................................	16	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................A-------------------------------------------------AACTC-----TAAGCGGCG...................................................................................................................................	15	6	0.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACTC-----TAAGCGGCAG..................................................................................................................................	15	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------AACTC-----TAAGCGGG....................................................................................................................................	15	12	0.25	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------AACTC-----TAAGCGGA....................................................................................................................................	15	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................A-------------------------------------------------AACTC-----TAAGCGGCT...................................................................................................................................	15	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------AACTC-----TAAGCGGGT...................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GA-----------TGGAAATG------ACGAATGTTTGA------CGAGG------------GTTTC---AGA----TAGCTACGTACATATACAGA----------TAC------CGTATGCATACATATATACGGTTTCTC--TGT-------------------------GGGGTCAGGAG---------GAAG-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATAGCGAAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCATTGTCT--AC---CAC--------GACAGGTT---CTCCC-------------------------TCCATAGATG---ATGCAGCCGCTGACGATGCGGA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................AAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCA...................................................................................................................................	21	1	1.00	1	0	1	0	0
................AAATG------ACGAATGTTTGA------CGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0

dm3

GA-----------TGGAAATG------ACGAATGTTTGA------CGAGG------------GTTTC---AGA----TAGCTACGTACATATGCATATACATACATATAT-------GTATGTATACA----TATAGTTTCTT--TGT-------------------------GGGGTCAGGAG---------GAAG-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAT----CATTCGATAGCGAAAA---------------GCAA-------------------------------------------------AACTC-----TAAGCGGCATTGTCT--ACCACCAC--------GACAGGTG---CTCCA-------------------------TTCATAGATG---ATGCAGGCGCTGACGATGCGGA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................A-------------------------------------------------AACTC-----TAAGCGGCATTG................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACGATGCGGA--------------GTTGGCTGGC-------	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAGATG---ATGCAGGCGCT..........................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCGGA--------------GTTGGCTGGC-------	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACTC-----TAAGCGGCATC.................................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGACGATGCGGA--------------GT...............	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................GAAGTC--GGGACACGG-----TTCGC..................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGGA--------------GTTGGCTGGC-------	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGACGATGCGGA--------------GTTGGC...........	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCTGACGATGCGGA--------------GT...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------TTCATAGATG---ATGCAGGCGCT..........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGATGCGGA--------------GTTGGCTGGC-------	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................T--TGT-------------------------GGGGTCAGGAG---------GAAG-T........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................ACTCAA--TTAT----CATTCGATAGT...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................A-------------------------------------------------AACTC-----TAAGCGGCATCA................................................................................................................................	18	5	0.80	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GTTTC---AGA----TAGCAACGTACATATG----------TACATACATA-------------------TATGGTTTCTT--TCT-------------------------GGGGTGAGGAG---------GAAA-CAT------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATACCA-G----------------------------------------------------------------------AACTC-----TAAGCGGCATTGTCT--AC---CAC--------GACAGGTG---CTCCA-------------------------TTCAC-GATG---ATGCGGCCGCTGACGATGCGGA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................CA-G----------------------------------------------------------------------AACTC-----TAAGCGGT....................................................................................................................................	16	2	1.00	2	0	0	0	0	0	0	2

droYak3

GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GTTTC---AGA----TAGCGACGTACATACA----------TACATATGTA-------------------TATGGTTTCCT--TCT-------------------------GGGGTCTGAAG---------GAAA-CAA------AG------GGG----AACGGAAGTC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTAC----CATTCGATACCA-G----------------------------------------------------------------------AACTC-----TAAGCGACATTGTCT--AC---CAC--------AACAGGTG---CTCCA-------------------------TTCAC-GATG---ATGCGCCCGCTGACGATGCGGA--------------GTTGGCTGGC----AAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGGA--------------GTTGGCTGGC----AA.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-GATG---ATGCGCCCGCTGACGATGCGGA--------------.................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACGATGCGGA--------------GTTGGCTGGC----...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG---ATGCGCCCGCTGACGATG...................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCGGA--------------GTTGGCTGG........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAC-GATG---ATGCGCCCGCTGAC.......................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGACGATGCGGA--------------GTTGG............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GCTTC---AGA----TAGTT---------------------------TG------------------------------TC--TC--------------------------GGGGGCAGTAG---------GAAA-CAA------AG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCAA--TTTC----CATTCGATACCA-A-----------------CC---------------------------------------------------AACTC-----TAACCGGCATTGTCT--GCT----C--------AACAGGTG---CTTCA-----------------------------C-GATG---ACGCGGCCGCTGACGATACGGA--------------GTTGGCTG---------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GA-----------TGGAAATG------ACGAAT--CTGA------CGAGGGCGAGGGCGAGGGCTCCTATAGATAGTTAGTT---------------------------TG------------------------------TC--TCG-------------------------TCTGACACGAG---------GTAG-CAGGGGGGATC------GGG----AGCGGAAGCC--GGGACACGC-----TTCGCTACTGATCACTCAA--TTCC----CATTCGATACCA-AGA---------------GC---------------------------------------------------AACTC-----TAACCGGCTCTGTCT--GCT----C--------GACAGGTG---CTCCAC-------------GATTCCACGA--TGAC-GATG---ACGCGGCCGCTGACGAAGCGGA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GA-----------TGGAAATG------TCGAAGGT-----------GAGG------------GTCTC---AGA----A-------------------------------------------------------------------------------------------------------GGG---------G-----AA------GG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCAA--TTCG----CATTCGATAGTA-A------------------------------------------------------------------------C---------CGGGGTATTGTCT--GCT----C--------CACAGGTG---CTCCAC-------------GAATCCACGAATCCAC-GATG---ACGCGGCCGCTGACGATGCGGA--------------GTTGGCTGAC-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GGTTC---AGAG--ATTGTT---------------------------TG------------------------------ACTTT-GACTGAGT---------GGGTGGGTG-------GGTGGCAACAGGGGAATCCAA------GG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTACTGATCACTCAA--TTCC----CATTCGATGCCA-G-TGTATCATACTCGTACCC---------------------------------------------------AACTCATACTCAAGCGGCATTGTCT--GTT----C--------AACAGGTG---CTCCA-----------------------------C-GATG---ATGCGG---------AGTTGGA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GA-----------TGGAAATG------ACGAATGTCTGA------CGAGG------------GGTTC---AGA----TTGTT---------------------------TG------------------------------A---GGT------------------------GGGGGGCAGGTGGT--------AAT-CAA------AG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCATTCAA--TTCC----CATTCGATACCA-ACT----------CCAAC--------------------------------------------------TTCAACTCCAACCCAACCGTCATTGTCT--GCT----C--------CACAGGTG---CTCTA-----------------------------C-GATG---ACGCGGCCGCTGACAATGCGAA--------------GTTGGCTGGC-------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GA-----------TGGAAATG------GCGAATGTTTGA------CGGGG------------TTTTC---AGATACATAGCT---------------------------TG--------------------------TATTTT--CGT-G-GAGGAGGAGGAGGGGGAGGG-G-------GTTGGC--------AAA-CAA------AG------GGG----AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCAA--TTCCGCCCGATTCGATAGCA-------------------------------------------------------------------------ACTC-----AACTCGGCATTGTCT--GCT----C--------CTCAGGTG---CTCCA-----------------------------C-GATG---ACGCGGTCGCTGACGATACGGA--------------GTTGGCTG---------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GA-----------TGGAAATG------ACGAATGTTTGA------CGATG------------GTTAC---AGA----TTGTT---------------------------TA------------------------------T---AGT-G-GAGTAGGGAACAGGGGAG-------------------------AGA-CAC------GGGTACTCGGGGGC-AACGGAAGCC--GGGACACGG-----TTCGCTTCTGATCACTCCA--TTCC----GATTCGATTCCA-A------------------------------------------------------------------------C----------TCAGCATTGTCTCTGCT----CCCATACATGACAGGTGGTGCTATA-----------------------------C-GACGATGA---------------CGCTTC--------------GTTGGTTGGC-------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GA-----------TGGAAATGGAAATTACGAAT--CAGAGTCAAAT----G--------------------------------------------------------------------------------------------------------------------------------CGGGG---------CAAAACTA------GGG---CTGGG----GGCGGAAGCCATGGGACACGG-----TTCGCTTCTGATCACCCAA--TGCT----GAT--GATT-----------------------------------------------------------------------------------------CCGCAATGTCT--GCT--CTC--------GACAGGTG---CTCCCCC-TATCTGGCTCCAACTCCCTGT--CTAC-GATG---ACGCAGCCGCCGACGATACGGG--------------GCTGGATGGC-------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCCGCCGACGATACGGG--------------GC...............	23	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGACGATACGGG--------------GCTGGAT..........	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATACGGG--------------GCTGGAT..........	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-GATG---ACGCAGCCGCCGA........................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCTGT--CTAC-GATG---ACGC.................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGT--CTAC-GATG---ACGCAGCC.............................................	23	1	1.00	1	0	1	0	0	0	0

droBip1

GGCGGAGACAAGATGGAAATGGAAATTACGAAT-TCAGAGTCAAAT----G--------------------------------------------------------------------------------------------------------------------------------CGGGG---------GAAA-CTA------GGG---TCGGG----GGCGGAAGCCATGGGACACGG-----TTCGCTTCTGATCACCCAA--TGCT----GAT--GATTC-----------------------------------------------------------------------------------------CACAATGTCT--GCT--CTC--------GACAGGTG---CTCCCCCTTATCCGGCTCCAACTCCCTGG--CTAC-GATG---ACGCAGCCGCCGACGATACGGG--------------GCTGGCTGGT-------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TA-----------TAGAAATG------GAAATGGTAGTA------CGT--------------------------------------GGAGATGCGTA----------------TGA-------------------------------------------------------CG--------------------------------G---G---G----TGCAGACGGAAGCG--TGGACACGGTTCGGTTCGCTTCTGATCACTCGTGGTTACACCA-------------GAA---------------GCGAAGCGATGAACGAACGAACCAACGAAAGAACGAACATCTTGTCTGATTAATATTC-----TGACTCACATTGTCT--TCT----C--------GACAGGTG---CTCAAA---------------------------AA-GATG---A------CGCTGACGGTGCGGAGAGACCGCGAGCGATTCGGCTGGAGTGCGCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-GATG---A------CGCTGACGGTGCGGAGAG............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGGCTGGAGTGCGCT	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAA---------------------------AA-GATG---A------CGCTGACGGTGC..................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG---A------CGCTGACGGTGCGGAGAGAC..........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGACGGTGCGGAGAGA...........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TA-----------TAGAAATG------GAAATGGTAGTA------CGT--------------------------------------GGAGATGCGTA----------------TGA-------------------------------------------------------CG--------------------------------G---G---G----TGCAGACGGAAGCG--TGGACACGGTTCGGTTCGCTTCTGATCACTCGTGGTTACACCA-------------GAA---------------GCGAAGCGATGAACGAACGAACCAACGAAAGAACGAACATCTTGTCTGATTAATATTC-----TGACTCACATTGTCT--TCT----C--------GACAGGTG---CTCAAA---------------------------AA-GATG---A------CGCTGACGGTGCGGAGAGACCGCGAGCGATTCGGCTGGAGTGCGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA---------------------------AA-GATG---A------CGCTGACGGTG...................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGACGGTGCGGAGAGACCGCGAGC...................	26	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGGAGAGACCGCGAGCG..................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------AA-GATG---A------CGCTGACGGTGCGGAGA.............................	25	1	1.00	1	0	0	0	0	0	1

droVir3

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTG---CTCGAA------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------GACAGGTG---CTTAA-----------------------------A-GATG---TCATTGTCCACGCTGGCGTTGG--------------ATTTGTTGGT-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----------------------------A-GATG---TCATTGTCCAC..........................................	19	1	1.00	1	1	0	0	0	0	0

droGri2

TT-----------ATATATAT------ATATA-----------------------------------------------------TATATATA----------TATATATATATA-TGTATATG--------TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_27290

2r:12575030-12575179 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.0	-27.9	-27.9