ID:

dsi_27287

 Coordinate:

2r:3686915-3687118 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.54 -10.44 -10.34

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGTGTAAACGCAACGGCAACAACTGCACAAAAACCAACTTGAAACCATTAAATATTTTTCGGTTTCGACTTCATGTTCACCCTACCCAAAATCTCTGCCATCTGTAAACTATTTTTCACAATGAACCAACTGCACAACAACAACAACAACACCATCTCCAAAATCAATACCAACAAATATGAAAATATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAACAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGTCAAGCCGCCGAGCAAC
**************************************************...........(((...(((.....))).)))..............((((((((((.((.(((((((((.............................................................)))))).)))...)).)))))..((((((...)))))).........................)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................................AAATGGACAAGTCTTTCGAAGA........................................................................................ 22 3 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................TGAACTTAACAGACAAGTCTTTCGAAGA........................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................ATTTAATTGGCGAACTAGACTC.............................................. 22 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CAAGGTCAAGCCGCCGAA.... 18 1 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................................................CAACAACAATAACAACACCAT.................................................................................................................................................... 21 1 7 0.14 1 0 0 0 0 1 0 0
.........................................................................................ATATCTCTGCCATCTATA..................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................CGAACTAGACTCTTAC.......................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AGCACATTTGCGTTGCCGTTGTTGACGTGTTTTTGGTTGAACTTTGGTAATTTATAAAAAGCCAAAGCTGAAGTACAAGTGGGATGGGTTTTAGAGACGGTAGACATTTGATAAAAAGTGTTACTTGGTTGACGTGTTGTTGTTGTTGTTGTGGTAGAGGTTTTAGTTATGGTTGTTTATACTTTTATACTTGAATTGTCTGTTCAGAAAGCTTCTAAGTTATGTTCGTGATTTGTTAAATTAACCGCTTGATCTGAGCAAGGTTGCGCTCTAGCTACTCCCGTTCCAGTTCGGCGGCTCGTTG
**************************************************...........(((...(((.....))).)))..............((((((((((.((.(((((((((.............................................................)))))).)))...)).)))))..((((((...)))))).........................)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
.............................................................................................................................................................................................................................................................................................CCAGTTCGGCTGCTCGT.. 17 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................AAAGCTGAAGTACTAGTGG.............................................................................................................................................................................................................................. 19 1 2 1.50 3 0 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................ACGGCTTGATCTGAGCAAC.......................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................AAAGCTGAAGTACTAGTGGCAGG.......................................................................................................................................................................................................................... 23 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCCCAGTTCGGAGGCTCGT.. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................AAAGCTGAAGTACTAGTGGC............................................................................................................................................................................................................................. 20 2 2 1.00 2 0 1 1 0 0 0 0 0 0 0
.............................................................CTAAAGCTGAAGTACTAGTGG.............................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................CTAAAGCTGAAGTACTAGTGGC............................................................................................................................................................................................................................. 22 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CCAGTTCGGATGCTCGTT. 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0
.............................................................CTAAAGCTGAAGTAC.................................................................................................................................................................................................................................... 15 1 11 0.55 6 0 6 0 0 0 0 0 0 0 0
.................................................................AGCTGAAGTACTAGTG............................................................................................................................................................................................................................... 16 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CCAGTTCGGAGGCTC.... 15 1 6 0.50 3 1 0 0 0 2 0 0 0 0 0
.................................................................AGCTGAAGTACTAGTGGCA............................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
............................................................CCTAAAGCTGAAGTACTAGTGG.............................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.............................................................CTAAAGCTGAAGTACTAG................................................................................................................................................................................................................................. 18 2 5 0.40 2 0 0 0 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................TCAGTTCGGAGGCTCGTT. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CCAGTTCGGATGCTCGT.. 17 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................ACGGCCTGATCTGAGCAA........................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0
.............................................................CTAAAGCTGAAGTACTA.................................................................................................................................................................................................................................. 17 2 20 0.20 4 0 2 0 0 0 0 0 2 0 0
..................................................................GCTGAAGTACTAGTGGCA............................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0
..........................................................................ACAACTGGGATGGGTGTT.................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................GCCTTGAATTGTCTGTTC................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CCAGTTCGGATGCTCGTTA 19 3 13 0.15 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGTTGTAGTTATGCTTGTTTAT............................................................................................................................ 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
........................................................AAAAGCCCTAGCTGAAGT...................................................................................................................................................................................................................................... 18 2 15 0.13 2 0 1 0 0 0 0 0 1 0 0
................................................................................................................................................ATTGTTGTGGTAAAGGTTTTC........................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................AAAAACTGTTACTTGGCT.............................................................................................................................................................................. 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
............................................................GCCACAGCTGAAACACAAGT................................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
...............................................................AAAGCTGAAGTACTA.................................................................................................................................................................................................................................. 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0
......................................................AAAAAAGCCCTAGCTGAAGT...................................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................GAGGTTTTTGTTATTGTGGTTT.............................................................................................................................. 22 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................AGGGTTTAGTTATGG.................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................CTAAGGCTGAAGTACAA.................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTTTAGTTAGGGTTG................................................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3686865-3687168 - dsi_27287 TCGTGT--AAA---CG------CAACGGCAACA--A-------C-------T----------------------------GCACAA---AAACCAACTTGAAACCA-TTAA---ATA-TT-----------------------------------------------------------------TT-TCGGTTTCGACTTC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGCCATCTGTAAACTATTTTTCAC--AATGAACCA---ACTGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TATGAAAA---------------TATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAACAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAGCCGCCGAGCA---------------------------AC
droSec2 scaffold_1:502142-502442 - TCGTGT--AAA---CG------TT---GCAACA--A-------C-------T----------------------------GCACAA---AAACCAACTTGAAACCA-TTAA---ATA-TT-----------------------------------------------------------------TT-TCGGTTTCGACTTC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGCCATCTGTAAACTATTTTTCAC--AATGAACCA---ACTGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TATGAAAA---------------TATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAGCCGCCGAGCA---------------------------AC
dm3 chr2R:2820099-2820405 - TTGTGT--AAA---CG------CAACGGCAACA--A-------C-------T----------------------------GCACAA---AAATCAACTTGAAACCA-TTGA---ATA-TT-----------------------------------------------------------------TT-TCGGTTTCGACTTT------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGTCATCTGTAAACTATTATTCAC--AATGAACCA---ACTGCACCA-----CAA-CAA------CAA---CAA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TTTGAAAA---------------TATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAACCGCCGAGCA---------------------------AC
droEre2 scaffold_4929:19729423-19729723 + TTGTGT--A-A---CG------CAACGACAACA--A------AC-------T----------------------------GCA------AAACCAACTTGAAACCA-TAAT---TTGTTT-----------------------------------------------------------------TT-TTGGTTTCGACTTC------AT--G------------------------------T---TCA---------CCCCACCC-------------AAAATCTCTGTCATCTATAAACTACTATTCAC--AATAAACCA---AATGCACCA-----CAA-CAA------CAA---CTG------CA---------ACA-------------------------------CCATCTCCAA-AATC-GA--------------------------------------TACCA----------------ACAAA-TATGAAAA---------------TATGAACTTAACAGACAAATCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAGCCGCCGAG-------------------------------
droYak3 2L:15553321-15553628 - TTGTGT--AAA---TG------CAACGGCAACA--A-------C-------T----------------------------GCATCA---AAACCAACTTGAAACCA-TTAA---TTA-TT-----------------------------------------------------------------TT-TTGGTTTTGACTTC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGTCGCCTGTAAACTATTATTCAC--AATGAACCA---ACTGCACCA-----CAA-AAACAACAAC------AA------CA---ACCACAAAA-------------------------------CCATCTTTAA--ATC-GG--------------------------------------TACCA----------------ACAAA-TATGCAAA---------------TATGAATTTAACAGACAAATCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCCTTTCAACGCGAGATAGATGAGGGCAAGGT---CAAGCCGCC----------------------------------
droEug1 scf7180000409672:4845276-4845548 - TTGTGC--GAA---TG------CAACGACAACA--A-------C----------------------------------------------------------------------------------------------------------------------------------------------------TTTTGACTCC------AT--G-------------------T----------TCGTTCA---------CCCCACCC-------------A-AATCTCTTTCATCTGTAAACTATTATTCAC--AATGAACCA---AATGCACAA-----CAA-CAA------CAACAACAA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAC-TATGCAAA---------------TATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCTCTAAATAATCTAATTGGCGAACTAGACTCGTTTCAACGCGAGATCGATGAGGGCAAGGG---CAAGCCGATGAGCA---------------------------GC
droBia1 scf7180000302292:3317298-3317608 + TCGTGT--AAA---CG------CAACGACAACAAAA-------C-------T----------------------------GCACCA---AAAACGATTTGAAACCA-TTG-----TACTT-----------------------------------------------------------------TT-TTGGTTTTGACTCC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGTCATCTGTAAACTATCAATCAC--AATGAACCA---AATGCACAA-----CAA-CAA------CAA---AAA------CA---------ACA-------------------------------CCATCTCTAA-AATC-AA--------------------------------------TACCA----------------ACAATGTATGAAAA------------AAATATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCCGGTGAGCA---------------------------GC
droTak1 scf7180000415382:46089-46416 - TCGTTT--AAAAATCG------CAACGACAACA--ACT----AC-------T----------------------------GCACCA---AAAACAACTTGAAACCA-TTACTCCTTA-C------------------------------------------------------------------TT-TTGGTTTTGACTTC------AT--G------------------------------TCACCCA---------CCTTACCC-----------AAAAAATCTCTGTCATCTGTAAACTATTATTCAC-AAATGAACCA---AATGCACAA-----CAA-CAA------CAACAAC-----CAACA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------AC----TATGAAAA----ACA-------AAATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGGCGGCAAGCCGATGAGCA---------------------------AC
droEle1 scf7180000491217:135955-136260 + TTGTGT--AAA---CG------CAACAACAACA--A-------C-------T----------------------------GCACCA----AATCAACTTGAAACCA-TTA----TTA-TTTC---------------------------------------------------------------GTATTGGTTTTGACTTC------AT--G------------------------------T---TCA---------CCTTATCC-------------AAAATCTCTGCCATCTGTAAACTATTATTCAC--AATGAACCA---AATGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAAAAATC-AA--------------------------------------TACCA----------------ACAAC-TATGAAAA--------------ATATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGTGAGATCGATGAGGGCAAGGG---CAAGTCGACGAGCA---------------------------AC
droRho1 scf7180000779196:226856-227150 - TTGTGC--AAA---CA------CAACGACAACA--A-------A-------T----------------------------GCACCA---A-----------AACCA-TTA----TTA-TTTT---------------------------------------------------------------GTATTGGTT-TGACTTC------AT--G------------------------------T---TCA---------CCTTACCC-------------AAAATCTCTGTCATCTGTAAACTATTATTCAC--AATGAACCA---AATGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAAAAATC-AA--------------------------------------TACCA----------------ACAAC-TATGAAAA--------------ATATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGTGAGATCGATGAGGGCAAGGG---CAAGCCGATGAGCA---------------------------AC
droFic1 scf7180000453955:450102-450431 + TCGTGTGCGAA---CG------CAACGAC---A--A-------C-------T----------------------------GCACAAAAAAAAACAAC-TGAAACCA-TTA----TT--TTCC---------------------------------------------------------------GT-TTGGTTTTGACGT-----TCAT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGCCATCTGTAAACTATTATTCACCAAACG-ACCA---AATGCACAA-----CAA-CAA------C------AATACCAACA---------AC------------------------AACCAACACCATCTCCAACAATC-AA--------------------------------------TACCAA--------TCAAT---CAAC-TATGAACC-ATG--AA-------ACTGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCCGATGGTCG---------------------------CT
droKik1 scf7180000302630:137620-137956 - TTGTTT--TAT--TTGAAACAACAAC------A--ACAACAAAA-------T----------------------------GCACAAA--AAAACAACCTGA-ACAA-TTA----TT--TT-----------------------------------------------------------------TT-CCCGTGTTTACCTCACGTTCGTTCG------------------------------T---TCA---------CCTTACCC-----------C-GATATCTTTGTCATCTGTAAACTAT---CCAC--AATCAACCA---AATGCACCA-----CAA-CAA------CAA---C-----CAACA---------ACA-----------------------------CACCATCTCCAA-TATCGAA---TACCA--------------------------------ACAA--------CCAACCAACAAC-TATGCAACCATGACAAACCAATATATGATC-TAATAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATCTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGC--------------------------------------
droAna3 scaffold_13266:9146132-9146450 - CCTTGT--TGG---GG----------------------------------------------------------------------------------------------------------------TTTTGTCCAAAAAAACGACAACCAACATCCAACATCTAACTATGCAC----------CT-TTGGTTTTGACTTC------AT--G------------------------------T-GTTCA---------CCCTACC--------------AATATCTCTGTCATCTGTAAACTAT---CCAC--AATGAACAA---AATGCACAA-----CAA-CA---------------------------------ACA-------------------------------CCATCT------ATG-AA---TACCA---------------ACCACCAACTACCACCACCAAACCACCAAA----CAACAAC-TATGAAAT--------------AAATGATCCTAACAGACAAGTCTTTCGAAGATTCAATCCAAGCTCTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCAGATG---------------------------------
droBip1 scf7180000396427:290353-290658 - CCTTGT--T--------------------------------------------------------------------------------------------------------------------GGGTTTCG--------------------CGTCCAACATCCAACCATGCACCGAATATCTCTT-TTGGTTTTGACTCC------AT--G------------------------------A---TCA---------CCCTACC--------------AATATCTCTGTCATCTGTAAACTAT---CCAC--AATGA-------AACGCACCA-----CAA------------------A------CA---------ACA-------------------------------CCATCTTCAA-TATG-AA---TACCAACAACAACAACCACAACCACCAACTACCACC---------------AACCA-CC--------------------------AATGATCCTAACAGACAAGTCTTTCGAAGATTCAATCCAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCAGATGATGA---------------------------TG
dp5 3:1099820-1100105 - TCCCT------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------TC-TCTCTCTTCTCTTC------AT--A------------------------------TTATCCA---------CCATATCCGAAACGAAAACAAAAAAT---CATCATCTGTAAA---------------TGAACCACATAATGCACCA-----CAAACA---------------------------------ATATTCAACCAACAAATGAAACCACCAACGAACACCACCACCAAAAACC-AA--------------------------------------CAACAA--------CCAACCAACAA---ATGAAT-----ACAAAAT--AATATAA--TATATAGACAAATCTTTCGAAGACTCAATCAAAGCATTAAATAATTTAATTGGCGAACTAGACTCGTTTCAACGTGAGATTGATGAGGGCAAGGG---CAAGCAG------------------------------------
droPer2 scaffold_2:1274013-1274306 - CCT--------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------TC-TCTCTCTTCTCTTC------AT--A------------------------------TTATCCA---------CCATATCCGAAACGAAAACAAAAAAT---CATCATCTGTAAA---------------TGAACCACATAATGCACCA-----CAAACA---------------------------------ATATTCAACCAACAAATGAAACCACCAACGAACACCACCACCAAAAACC-AA--------------------------------------CAACAG--------CCAACCAACAA---ATGAAT-----ACAAAAT--AATATAA--TATATAGACAAATCTTTCGAAGACTCAATCAAAGCATTAAATAATTTAAATGGCGAGCTAGACTCGTTTCAACGTGAGATTGATGAGCCCAGGAC--GCAAGCAGAACAACA---------------------------AC
droWil2 scf2_1100000004513:2339086-2339367 - dwi_850 C----------------------AACGAA-ACAAAA-------C-------TACACACACACACACA-----------------CA---A-----------AACCAATTA----T----T-----TGATTTCA--------------------TTTTCAC-----------------AATTTC---------------------------------------------TAATTTTG-----TATAA-AAACCAAAAAAAAAAAATC--------------CAAATCTATATCATCTGTAAACTAT-ATCCAC--A-----CAC---ACTGCACAA-----CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AATG-AA--------------------------------------CACCA----------------AAT--------------------------AATAATTTTAATAGACAAATCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAATTAGACTCGTTTCAACGTGAGATCGATGAGGGCAAGGG---CAAGCA------------------------------------C
droVir3 scaffold_12823:1647397-1647666 + dvi_3024 TTTCCT--ACA---CA------CACACACA-----------------------------------CACACACACATACGCGCACCA---A------C-----------AAA---ACACTC--GTTAAAATTCG--------------------CGT-----------------------------TT-TTTTT---------------------------------------------------------------------------------------------TTAAACACTTGTACAATATT----------------------TGCACCACACAACAA-CAA------C------AA------CC---------ACA-------------------------------ACGACTCCAA-CAAC-AACAA-----------------------------------CTTCA----------------ACAAC--CTGAACA--------------AATTGAA-TATTTAGACAAATCTTTCGAAGATTCGATACAAGCATTAAATAATTTAATTGGCGAATTAGACTCCTTTCAACGTGAGATCGATGAGGGCAAGGG---CAAGCAGCACAGCA-----------------------------
droMoj3 scaffold_6496:929074-929356 + dmo_913 TCCCTC-------------------------------------------------------------------------------------------------------------TGCTC-----------------------------------------------------------------GT-TTGATTTTGTCTCC------CA--C-CACCACGCACCATCTCGTTTCG-----TAT------------------------------------------AAAAAAAACCA------------AAC--AATAT-----ATATTGCACCACACAACAA-CAA------C------TA------CAACAACAACAACA-------------------------------ATATCTCC-------------------------------------------------ACCA----------------ACCAA-CCAAAAAC---------------TACAAAATAATTAGACAAATCTTTCGAAGATTCAATACAAGCATTAAATAATTTAATTGGCGAATTAGACTCCTTTCAACGTGAGATCGATGAGGGCAAGGG---CAAGCAGCACAGCAGCAACAGCAACAGCAACAGCAATAGCAAC
droGri2 scaffold_15245:16383965-16384273 - ACACAC--ACA---CA------AAACAATA-------------CACTCACATACACACACACACACA------CA-A--CGCAC-----AAACCAACTT-------------------------------TCG--------------------CG------------------------------------TTATTTTGTAC------AA--AACAC----AATAATTTATTTTCGACTCATGT------------------------------------------------------AAAA-AT---AAAA--AATAAA--A---AATGCACCACACAACAA-CAA------C------AA------CA---------ACA-------------------------------------ACAAAAATG-A---------------------------------------CTTCA----------------ACAAACCATAAAAC---------TCAAAACATAA--TAATTAGACAAATCTTTCGAAGACTCGATTCAAGCACTAAATAATTTAATTGGCGAATTAGACTCCTTTCAACGAGAGATCGATGAGGGCAAGGGCAGCAAGCAGCAGC-----------------------AAT-GCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGTGT--AAA---CG------CAACGGCAACA--A-------C-------T----------------------------GCACAA---AAACCAACTTGAAACCA-TTAA---ATA-TT-----------------------------------------------------------------TT-TCGGTTTCGACTTC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGCCATCTGTAAACTATTTTTCAC--AATGAACCA---ACTGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TATGAAAA---------------TATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAACAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAGCCGCCGAGCA---------------------------ACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTTAACAGACAAGTCTTTCGAAGA......................................................................................................................2811.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTGGCGAACTAGACTC............................................................................2211.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGT---CAAGCCGCCGAA...............................1820.50100000000001000000
droSec2
TCGTGT--AAA---CG------TT---GCAACA--A-------C-------T----------------------------GCACAA---AAACCAACTTGAAACCA-TTAA---ATA-TT-----------------------------------------------------------------TT-TCGGTTTCGACTTC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGCCATCTGTAAACTATTTTTCAC--AATGAACCA---ACTGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TATGAAAA---------------TATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAGCCGCCGAGCA---------------------------ACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGGGCAAGGT---CAAGCCGC...................................2311.0010001
dm3
TTGTGT--AAA---CG------CAACGGCAACA--A-------C-------T----------------------------GCACAA---AAATCAACTTGAAACCA-TTGA---ATA-TT-----------------------------------------------------------------TT-TCGGTTTCGACTTT------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGTCATCTGTAAACTATTATTCAC--AATGAACCA---ACTGCACCA-----CAA-CAA------CAA---CAA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TTTGAAAA---------------TATGAACTTAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAACCGCCGAGCA---------------------------ACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAATTGGCGAACTAGACTCGT..........................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGAGGGCAAGGT---CAAAC......................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGCGAACTAGACTCGT..........................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTAATTGGCGAACTAGACTCGT..........................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTGGCGAACTAGACTCGT..........................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AC--AATGAACCA---ACTGCACCA-----C......................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACGCGAGATCGATGAGGGCAAGG...............................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGATCGATGAGGGC...................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCCAACGCGAGATCGATGAGGGC...................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGATGAGGGCAAGGT---CAAACCGC...................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGCGAGATCGATGAGGGC...................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCTTTCGAAGATTCAATACAAG...........................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TATTCAC--AATGAACCA---ACTGCACCA-----CA.....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCGAGATCGATGAGGGCAAGGT---C..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CCA-----CAA-CAA------CAA---CAA------CA---------ACA-------------------------------C.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAATAATTTAATTGGCG......................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGGT---CAAACCGC...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCCAACGCGAGATCGATGAGG.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGCAAGGT---CAAACCGCCGAGC..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGATCGATGAGGGCAAGGT---CAAAC......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCGAGATCGATGAGGGCAAGGT---...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGATCGATGAGGGCAAGGT---C..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACGCGAGATCGATGAGGGC...................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAAGGT---CAAACCGC...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTAGACTCGTTCCAACGCGAGAT.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAA-TTTGA......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATTCAATACAAGCACT.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGCGAGATCGATGAGGGCAAGG...............................................2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGATCGATGAGGGCA..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTCAATACAAGCACT.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATGAGGGCAAGGT---CAAAC......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................AATCAACTTGAAACCA-TTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGGGCAAGGT---CAAACCGCCGAG...............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGCAAGGT---CAAACCG....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTGGCGAACTAGACTC............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCCAACGCGAGATCGATGAGGGCAAG................................................3011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATTTAATTGGCGAACTAGACTCGT..........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAA-AATC-AA--------------------------------------TACCA----------------ACAA.............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTAACAGACAAGTCTTTCGA.........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAATTGGCGAACTAGACTCGTT.........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGGCAAGGT---CAAACCGC...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................A-----CAA-CAA------CAA---CAA------CA---------ACA-------------------------------CCA...........................................................................................................................................................................................................................................................21100.3030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................A-CAA------CAA---CAA------CA---------ACA-------------------------------CCA...........................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................A-----CAA-CAA------CAA---CAA------CA---------ACA-------------------------------CC............................................................................................................................................................................................................................................................20140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTGTGT--A-A---CG------CAACGACAACA--A------AC-------T----------------------------GCA------AAACCAACTTGAAACCA-TAAT---TTGTTT-----------------------------------------------------------------TT-TTGGTTTCGACTTC------AT--G------------------------------T---TCA---------CCCCACCC-------------AAAATCTCTGTCATCTATAAACTACTATTCAC--AATAAACCA---AATGCACCA-----CAA-CAA------CAA---CTG------CA---------ACA-------------------------------CCATCTCCAA-AATC-GA--------------------------------------TACCA----------------ACAAA-TATGAAAA---------------TATGAACTTAACAGACAAATCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGT---CAAGCCGCCGAG-------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAAGGT---CAAGCCG....................................1811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACGCGAGATCGATGAGG.....................................................2011.0010000100
droYak3
TTGTGT--AAA---TG------CAACGGCAACA--A-------C-------T----------------------------GCATCA---AAACCAACTTGAAACCA-TTAA---TTA-TT-----------------------------------------------------------------TT-TTGGTTTTGACTTC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGTCGCCTGTAAACTATTATTCAC--AATGAACCA---ACTGCACCA-----CAA-AAACAACAAC------AA------CA---ACCACAAAA-------------------------------CCATCTTTAA--ATC-GG--------------------------------------TACCA----------------ACAAA-TATGCAAA---------------TATGAATTTAACAGACAAATCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCCTTTCAACGCGAGATAGATGAGGGCAAGGT---CAAGCCGCC----------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGATAGATGAGGGCAAG................................................2211.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCGAGATAGATGAGGGCAA.................................................2311.00100000010000
droEug1
TTGTGC--GAA---TG------CAACGACAACA--A-------C----------------------------------------------------------------------------------------------------------------------------------------------------TTTTGACTCC------AT--G-------------------T----------TCGTTCA---------CCCCACCC-------------A-AATCTCTTTCATCTGTAAACTATTATTCAC--AATGAACCA---AATGCACAA-----CAA-CAA------CAACAACAA------CA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------ACAAC-TATGCAAA---------------TATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCTCTAAATAATCTAATTGGCGAACTAGACTCGTTTCAACGCGAGATCGATGAGGGCAAGGG---CAAGCCGATGAGCA---------------------------GCSizeHit CountTotal NormTotal
No Reads
droBia1
TCGTGT--AAA---CG------CAACGACAACAAAA-------C-------T----------------------------GCACCA---AAAACGATTTGAAACCA-TTG-----TACTT-----------------------------------------------------------------TT-TTGGTTTTGACTCC------AT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGTCATCTGTAAACTATCAATCAC--AATGAACCA---AATGCACAA-----CAA-CAA------CAA---AAA------CA---------ACA-------------------------------CCATCTCTAA-AATC-AA--------------------------------------TACCA----------------ACAATGTATGAAAA------------AAATATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCCGGTGAGCA---------------------------GCSizeHit CountTotal NormTotal
No Reads
droTak1
TCGTTT--AAAAATCG------CAACGACAACA--ACT----AC-------T----------------------------GCACCA---AAAACAACTTGAAACCA-TTACTCCTTA-C------------------------------------------------------------------TT-TTGGTTTTGACTTC------AT--G------------------------------TCACCCA---------CCTTACCC-----------AAAAAATCTCTGTCATCTGTAAACTATTATTCAC-AAATGAACCA---AATGCACAA-----CAA-CAA------CAACAAC-----CAACA---------ACA-------------------------------CCATCTCCAA-AATC-AA--------------------------------------TACCA----------------AC----TATGAAAA----ACA-------AAATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGGCGGCAAGCCGATGAGCA---------------------------ACSizeHit CountTotal NormTotal
No Reads
droEle1
TTGTGT--AAA---CG------CAACAACAACA--A-------C-------T----------------------------GCACCA----AATCAACTTGAAACCA-TTA----TTA-TTTC---------------------------------------------------------------GTATTGGTTTTGACTTC------AT--G------------------------------T---TCA---------CCTTATCC-------------AAAATCTCTGCCATCTGTAAACTATTATTCAC--AATGAACCA---AATGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAAAAATC-AA--------------------------------------TACCA----------------ACAAC-TATGAAAA--------------ATATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGTGAGATCGATGAGGGCAAGGG---CAAGTCGACGAGCA---------------------------ACSizeHit CountTotal NormTotal
No Reads
droRho1
TTGTGC--AAA---CA------CAACGACAACA--A-------A-------T----------------------------GCACCA---A-----------AACCA-TTA----TTA-TTTT---------------------------------------------------------------GTATTGGTT-TGACTTC------AT--G------------------------------T---TCA---------CCTTACCC-------------AAAATCTCTGTCATCTGTAAACTATTATTCAC--AATGAACCA---AATGCACAA-----CAA-CAA------C------AA------CA---------ACA-------------------------------CCATCTCCAAAAATC-AA--------------------------------------TACCA----------------ACAAC-TATGAAAA--------------ATATGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGTGAGATCGATGAGGGCAAGGG---CAAGCCGATGAGCA---------------------------ACSizeHit CountTotal NormTotal
No Reads
droFic1
TCGTGTGCGAA---CG------CAACGAC---A--A-------C-------T----------------------------GCACAAAAAAAAACAAC-TGAAACCA-TTA----TT--TTCC---------------------------------------------------------------GT-TTGGTTTTGACGT-----TCAT--G------------------------------T---TCA---------CCCTACCC-------------AAAATCTCTGCCATCTGTAAACTATTATTCACCAAACG-ACCA---AATGCACAA-----CAA-CAA------C------AATACCAACA---------AC------------------------AACCAACACCATCTCCAACAATC-AA--------------------------------------TACCAA--------TCAAT---CAAC-TATGAACC-ATG--AA-------ACTGATC-TAACAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCCGATGGTCG---------------------------CTSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTTT--TAT--TTGAAACAACAAC------A--ACAACAAAA-------T----------------------------GCACAAA--AAAACAACCTGA-ACAA-TTA----TT--TT-----------------------------------------------------------------TT-CCCGTGTTTACCTCACGTTCGTTCG------------------------------T---TCA---------CCTTACCC-----------C-GATATCTTTGTCATCTGTAAACTAT---CCAC--AATCAACCA---AATGCACCA-----CAA-CAA------CAA---C-----CAACA---------ACA-----------------------------CACCATCTCCAA-TATCGAA---TACCA--------------------------------ACAA--------CCAACCAACAAC-TATGCAACCATGACAAACCAATATATGATC-TAATAGACAAGTCTTTCGAAGATTCAATACAAGCACTAAATAATCTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGC--------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCTTGT--TGG---GG----------------------------------------------------------------------------------------------------------------TTTTGTCCAAAAAAACGACAACCAACATCCAACATCTAACTATGCAC----------CT-TTGGTTTTGACTTC------AT--G------------------------------T-GTTCA---------CCCTACC--------------AATATCTCTGTCATCTGTAAACTAT---CCAC--AATGAACAA---AATGCACAA-----CAA-CA---------------------------------ACA-------------------------------CCATCT------ATG-AA---TACCA---------------ACCACCAACTACCACCACCAAACCACCAAA----CAACAAC-TATGAAAT--------------AAATGATCCTAACAGACAAGTCTTTCGAAGATTCAATCCAAGCTCTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCAGATG---------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGGCAAGGG---CAAGCAG....................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCGATGAGGGCAAGG...............................................1911.001000010
droBip1
CCTTGT--T--------------------------------------------------------------------------------------------------------------------GGGTTTCG--------------------CGTCCAACATCCAACCATGCACCGAATATCTCTT-TTGGTTTTGACTCC------AT--G------------------------------A---TCA---------CCCTACC--------------AATATCTCTGTCATCTGTAAACTAT---CCAC--AATGA-------AACGCACCA-----CAA------------------A------CA---------ACA-------------------------------CCATCTTCAA-TATG-AA---TACCAACAACAACAACCACAACCACCAACTACCACC---------------AACCA-CC--------------------------AATGATCCTAACAGACAAGTCTTTCGAAGATTCAATCCAAGCACTAAATAATTTAATTGGCGAACTAGACTCGTTCCAACGCGAGATCGATGAGGGCAAGGG---CAAGCAGATGATGA---------------------------TGSizeHit CountTotal NormTotal
No Reads
dp5
TCCCT------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------TC-TCTCTCTTCTCTTC------AT--A------------------------------TTATCCA---------CCATATCCGAAACGAAAACAAAAAAT---CATCATCTGTAAA---------------TGAACCACATAATGCACCA-----CAAACA---------------------------------ATATTCAACCAACAAATGAAACCACCAACGAACACCACCACCAAAAACC-AA--------------------------------------CAACAA--------CCAACCAACAA---ATGAAT-----ACAAAAT--AATATAA--TATATAGACAAATCTTTCGAAGACTCAATCAAAGCATTAAATAATTTAATTGGCGAACTAGACTCGTTTCAACGTGAGATTGATGAGGGCAAGGG---CAAGCAG------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCT--------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------TC-TCTCTCTTCTCTTC------AT--A------------------------------TTATCCA---------CCATATCCGAAACGAAAACAAAAAAT---CATCATCTGTAAA---------------TGAACCACATAATGCACCA-----CAAACA---------------------------------ATATTCAACCAACAAATGAAACCACCAACGAACACCACCACCAAAAACC-AA--------------------------------------CAACAG--------CCAACCAACAA---ATGAAT-----ACAAAAT--AATATAA--TATATAGACAAATCTTTCGAAGACTCAATCAAAGCATTAAATAATTTAAATGGCGAGCTAGACTCGTTTCAACGTGAGATTGATGAGCCCAGGAC--GCAAGCAGAACAACA---------------------------ACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
C----------------------AACGAA-ACAAAA-------C-------TACACACACACACACA-----------------CA---A-----------AACCAATTA----T----T-----TGATTTCA--------------------TTTTCAC-----------------AATTTC---------------------------------------------TAATTTTG-----TATAA-AAACCAAAAAAAAAAAATC--------------CAAATCTATATCATCTGTAAACTAT-ATCCAC--A-----CAC---ACTGCACAA-----CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AATG-AA--------------------------------------CACCA----------------AAT--------------------------AATAATTTTAATAGACAAATCTTTCGAAGATTCAATACAAGCACTAAATAATTTAATTGGCGAATTAGACTCGTTTCAACGTGAGATCGATGAGGGCAAGGG---CAAGCA------------------------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................CAA-----CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AATG-AC--------------------------------------......................................................................................................................................................................................................2732.00605010
............................................................................................................................................................................................................................................................................................................................................CAA-----CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AAT................................................................................................................................................................................................................................................2441.00404000
.............................................................................................................................................................................................................................................................................................................................................AA-----CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AAT................................................................................................................................................................................................................................................2360.17101000
........................................................................................................................................................................................................................................................................................................................................................CAA------C------AA------CA---------A-------------------------------------CTACAA-AATG-AC--------------------------------------......................................................................................................................................................................................................2190.11101000
............................................................................................................................................................................................................................................................................................................................................CAA-----CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AA.................................................................................................................................................................................................................................................23130.08101000
....................................................................................................................................................................................................................................................................................................................................................CAA-CAA------C------AA------CA---------A-------------------------------------CTACAA-AA.................................................................................................................................................................................................................................................20200.05101000
droVir3
TTTCCT--ACA---CA------CACACACA-----------------------------------CACACACACATACGCGCACCA---A------C-----------AAA---ACACTC--GTTAAAATTCG--------------------CGT-----------------------------TT-TTTTT---------------------------------------------------------------------------------------------TTAAACACTTGTACAATATT----------------------TGCACCACACAACAA-CAA------C------AA------CC---------ACA-------------------------------ACGACTCCAA-CAAC-AACAA-----------------------------------CTTCA----------------ACAAC--CTGAACA--------------AATTGAA-TATTTAGACAAATCTTTCGAAGATTCGATACAAGCATTAAATAATTTAATTGGCGAATTAGACTCCTTTCAACGTGAGATCGATGAGGGCAAGGG---CAAGCAGCACAGCA-----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTGAGATCGATGAGGGC...................................................2112.002000000000000020000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGGGCAAGGG---CAAGC......................................2011.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA----------------ACAAC--CTGAACA--------------AATTG................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTGAGATCGATGAGGGCAAG................................................2511.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGGGCAAGGG---CAAGCA.....................................2111.001000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ACA-------------------------------ACGACTCCAA-CAAC-AAC...........................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCGATGAGGGCAAGGG---C..........................................2311.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AACAA-CAA------C------AA------CC---------ACA-------------------------------AC............................................................................................................................................................................................................................................................18200.051000100000000000000000000000000000000000000000000000000000000000
..........................CACA-----------------------------------CACACACACATACGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
........................CACACA-----------------------------------CACACACACATACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
TCCCTC-------------------------------------------------------------------------------------------------------------TGCTC-----------------------------------------------------------------GT-TTGATTTTGTCTCC------CA--C-CACCACGCACCATCTCGTTTCG-----TAT------------------------------------------AAAAAAAACCA------------AAC--AATAT-----ATATTGCACCACACAACAA-CAA------C------TA------CAACAACAACAACA-------------------------------ATATCTCC-------------------------------------------------ACCA----------------ACCAA-CCAAAAAC---------------TACAAAATAATTAGACAAATCTTTCGAAGATTCAATACAAGCATTAAATAATTTAATTGGCGAATTAGACTCCTTTCAACGTGAGATCGATGAGGGCAAGGG---CAAGCAGCACAGCAGCAACAGCAACAGCAACAGCAATAGCAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTGAGATCGATGAGGGC...................................................2211.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGCACAGCAGCAACAGCAACAGCAA.............2911.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAATCTTTCGAAGATT....................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCAGCAACAGCAACA.................20180.061000010
......................................................................................................................................................................................................................................................................................................................................................A-CAA------C------TA------CAACAACAACAACA-------------------------------..............................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAACAGCAAT......21200.051000100
droGri2
ACACAC--ACA---CA------AAACAATA-------------CACTCACATACACACACACACACA------CA-A--CGCAC-----AAACCAACTT-------------------------------TCG--------------------CG------------------------------------TTATTTTGTAC------AA--AACAC----AATAATTTATTTTCGACTCATGT------------------------------------------------------AAAA-AT---AAAA--AATAAA--A---AATGCACCACACAACAA-CAA------C------AA------CA---------ACA-------------------------------------ACAAAAATG-A---------------------------------------CTTCA----------------ACAAACCATAAAAC---------TCAAAACATAA--TAATTAGACAAATCTTTCGAAGACTCGATTCAAGCACTAAATAATTTAATTGGCGAATTAGACTCCTTTCAACGAGAGATCGATGAGGGCAAGGGCAGCAAGCAGCAGC-----------------------AAT-GCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:30 PM