ID:

dsi_27283

 Coordinate:

2r:5756684-5756981 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.6 -47.5 -47.5

Flybase annnotation

five_prime_UTR [2r_5756446_5756683_-]; exon [2r_5756380_5756683_-]; exon [2r_5756982_5757035_-]; five_prime_UTR [2r_5756982_5757035_-]; intron [2r_5756684_5756981_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCATCGAAAGCGTCGAAGCAACCGAATCGCATCGAACACCCGATAAATCGGTTAGCCAATGCAAAACTCCACTGAGAAATGCACAGCATACAAAAATGAAAAATAACAAATAAAACCGAATAGAAAAATAACAAACTCTTGGACAACATTCCCAACTAGATAACCAATAATCCCGTGCTTTTCGTTTATTTGCCGTTCAGTGACAGTGCAAGAAAGTGATGTGCTCCAGTTCTTGTATAACTCTTCACAATTAACAAGAAAACCAAAACGGTGTTTTGCCTGCGGCCAATTGTGTTTCCCCGCTGCTTTTATCTTATTTCAGTTGAAAATTTGCTTATCTGCTTGCAGGCGGATGGATGCTGGTACACATATATATTCAGCTACTGCTTATGGCCAGC
**************************************************((.(((....(((((..((.(((((((.((((...)))).......((((......((((((((..((((.((.................(((......)))......(((........))).....)).))))))))))))...))))((((.((((((((((..((........)).)))))))...)))..))))......(((((..(((.....))).)))))...(((((...............)))))..........))))))).))...)))))......))).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR1275483
Male prepupae		 SRR1275487
Male larvae
......AAAGCGTCGAAGCAACCG...................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0
.........................ATCGCATCGAACACCCGA................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.........................ATCGCATCGAACACCCGG................................................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
...................................................TTAGCCAATGCAAAACTC......................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................GTGGCCAATTGTGTTTCC................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0
......AAAGCGTCGAAGCAACCGAATCGC................................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................TATCCCCGTGCTTTTCCTTTAT................................................................................................................................................................................................................. 22 3 3 0.33 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TGTGCTTGCCGGCGGATGGC......................................... 20 3 11 0.18 2 0 0 0 0 0 1 1
..............................ATCGAACCCCCGGTAAA............................................................................................................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0
...TCAAGAGTGTCGAAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................ 19 3 19 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AGTAGCTTTCGCAGCTTCGTTGGCTTAGCGTAGCTTGTGGGCTATTTAGCCAATCGGTTACGTTTTGAGGTGACTCTTTACGTGTCGTATGTTTTTACTTTTTATTGTTTATTTTGGCTTATCTTTTTATTGTTTGAGAACCTGTTGTAAGGGTTGATCTATTGGTTATTAGGGCACGAAAAGCAAATAAACGGCAAGTCACTGTCACGTTCTTTCACTACACGAGGTCAAGAACATATTGAGAAGTGTTAATTGTTCTTTTGGTTTTGCCACAAAACGGACGCCGGTTAACACAAAGGGGCGACGAAAATAGAATAAAGTCAACTTTTAAACGAATAGACGAACGTCCGCCTACCTACGACCATGTGTATATATAAGTCGATGACGAATACCGGTCG
**************************************************((.(((....(((((..((.(((((((.((((...)))).......((((......((((((((..((((.((.................(((......)))......(((........))).....)).))))))))))))...))))((((.((((((((((..((........)).)))))))...)))..))))......(((((..(((.....))).)))))...(((((...............)))))..........))))))).))...)))))......))).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.................................................................................................................................................................................................CCAAGTCACTGTCACATTC.......................................................................................................................................................................................... 19 2 1 5.00 5 3 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................CTGAGGAGTGTTAATTGTCCT........................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...AGCCTTCGCAGCTTCG........................................................................................................................................................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................ATAAGTCGATGACTATTACAGGT.. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................TCGTATGTTTTAACGTTTTATT.................................................................................................................................................................................................................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCAAGTCACTGTCACATT........................................................................................................................................................................................... 18 2 4 0.50 2 1 1 0 0 0 0 0 0 0 0
..TAGCTTTCGTAGCTTCG........................................................................................................................................................................................................................................................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................AGAAAGGGGCGACTAAAATGG..................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................ACTCAAAGTGGCGACGATAA........................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................GGTCGATCTATTGGTTTTT.................................................................................................................................................................................................................................... 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................GGTTATTAGGACACG............................................................................................................................................................................................................................ 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0
...................................................................AGGTGGCTCTTTACTTG.......................................................................................................................................................................................................................................................................................................................... 17 2 20 0.10 2 0 0 1 0 0 0 0 0 0 1
......................................GGGCTATTTAGCCATGGGG..................................................................................................................................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CTAAGGGGCAACGAAAAT....................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0
..............................................................TTTTGAGGTGACGATTTATG............................................................................................................................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................TATTGTTTGAGCACC................................................................................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................TTATTGTTTGAGCAC................................................................................................................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................ACTCAAAGTGGCGACGATA......................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................TATATTGTTTGAGAA.................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 09:45 PM