ID:

dsi_2728

 Coordinate:

2l:29985-30134 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4 -9.4 -9.2 -9.2

Flybase annnotation

CDS [2l_30135_30331_-]; exon [2l_30135_30331_-]; intron [2l_26822_30134_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGTTATTCCTGCCACAAGTAGCTCAGATCTCACTATCGTTGCTTTCTAATCGAAGACACTACTTTATTGATGCTAGCCAAATTCTAAGCAATTCATTATGTTACATGCTCTTTTCTCTCATATAACGCATACTGCGCTATCTTTTTGCACCAACCGACACCGACACATCTACACTCCGACTTAAACTCCGGACA
***********************************************************************************************.((........((((((((......((.(((((((((.......))).)))..))).)).......)).)))).............))........))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902009
testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 GSM343915
embryo
....................................................................................CTCACTATCGTTACTGTCTA.................................................................................................................................................. 20 2 1 2.00 2 0 0 0 2 0 0 0 0
...............................................................................................TGCTTTCTAATCGAAGACACTAC.................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................CGAAGACACTACTTTATTGATG.......................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................AGCTCAGATCTCACTATCGTT.......................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 1
.............................................................................................GTTGCTTTCTAATCGAAGACA........................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................TTTGGGACCGCCTATAGGTAA.................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................TTGGGACCGCCTATAGGTAAGCTGT............................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
......................................GACCGCCTATAGGTAAGCTGT............................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.TTCCTCAAACTGGAAAAATCGGATCT............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTGCACCAACCGACACCGAC.............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................CTATCTTTTTGCACCAACCGA..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................CTCATATAACGCATACTGCGC......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................TAGGTAAGCTGTTATTCCT........................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................TCTCACTATCGTTGC........................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................TAGCTCAGATCTCACTATCGT........................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................CTCATATAACGCATACTGCCT......................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................CTTACGCTTTTGGGACCGCCT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................TCTCACTATCGTTGCTTTCTAATA............................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................CTCATATAACGCATACTG............................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0
..................ATCGGATCTTACGCTTTTGGG................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................TTGGGACCGCCTATAGGTAAG................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................ATAGGTAAGCTGTTATTCCTG....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................TTTTGGGACCGCCTATAGGTA..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................TGTTATTCCTGCCACAAGTAGCTCAGA....................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0
...........TGGAAAAATCGGATCTTACGCTTTT...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................TAGTTCAGATCTCACTATCGTTGCT....................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
.............GAAAAATCGGATCTTACGCTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................CGCTTTTGGGACCGCCT............................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0
.....TCAAACTGGAAAAATCGGATC................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........ACTGGAAAAATCGGATCTTAC............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................GATGCTTTCTAATCGAAGACA........................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................TTATTCCTGCCACAAGTAGCT........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................ATTCCTGCCACAAGTAGCTCA......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......AAACTGGAAAAATCGGATC................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TACTGCGCTATCTTTTTGCACCAAC........................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................TCTACACTCCGACTTCCAC........ 19 2 2 1.00 2 0 0 2 0 0 0 0 0
............................................................................GCTCAGATCTCACTATCGTTG......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............GGAAAAATCGGATCTT.............................................................................................................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................TAGCTCAGATCTCACTATCGTTGCTTT..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................GATCTTACGCTTTTGGGACCG............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATCTACAGTCCGACGAAAA......... 19 3 20 0.65 13 0 0 12 1 0 0 0 0
......................................................................................................TAATCGAAGACACTACTTAAA............................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACTACAGTCCGACTTAAA......... 18 2 2 0.50 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................ACATCTACAGTCCGACA............. 17 2 14 0.29 4 0 0 4 0 0 0 0 0
..........................................................................................................................................................................................................................AAACATCTACAGTCCGAC.............. 18 2 4 0.25 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................CAGCCACATCTACAGTCCGAC.............. 21 3 4 0.25 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................ACATCTACAGTCCGACGAAA.......... 20 3 10 0.20 2 0 0 0 2 0 0 0 0
............................................................................................................................................................................................................................ACATCTACAGTCCGACG............. 17 2 5 0.20 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................CATCTACAGTCCGACGTCAA......... 20 3 6 0.17 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CACATCTACAGTCCGACGAA........... 20 3 7 0.14 1 0 0 0 1 0 0 0 0
.......AAACTGGAAAACTTGAATCTT.............................................................................................................................................................................................................................. 21 3 17 0.12 2 0 0 0 0 2 0 0 0
..............................................................................................................................................................................................................................ATCTACAGTCCGACATA........... 17 2 9 0.11 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................TTCTACAGTCCGACGTAAA......... 19 3 13 0.08 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................ATCTACACTCCGACGA............ 16 2 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................ATCTACACTCCGACGATA.......... 18 3 20 0.05 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TCTACAGTCCGACATA........... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................ACATCTACAGTCCGACGAA........... 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAAGGAGTTTGACCTTTTTAGCCTAGAATGCGAAAACCCTGGCGGATATCCATTCGACAATAAGGACGGTGTTCATCGAGTCTAGAGTGATAGCAACGAAAGATTAGCTTCTGTGATGAAATAACTACGATCGGTTTAAGATTCGTTAAGTAATACAATGTACGAGAAAAGAGAGTATATTGCGTATGACGCGATAGAAAAACGTGGTTGGCTGTGGCTGTGTAGATGTGAGGCTGAATTTGAGGCCTGT
*********************************************************.((........((((((((......((.(((((((((.......))).)))..))).)).......)).)))).............))........))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................................................TGGCTGTGTAGATGTGAGGCTGAAT........... 25 0 1 33.00 33 1 0 17 14 0 1 0 0 0 0
............................................................................CGAGTCTAGAGTGATAGCAACGAAAGAT.................................................................................................................................................. 28 0 1 10.00 10 0 7 0 0 2 0 1 0 0 0
............................................................................................................................................ATTCGTTAAGTAATACAATGT......................................................................................... 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................................CGGTGTTCATCGAGTCTAGAGTGAT............................................................................................................................................................... 25 0 1 6.00 6 3 2 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GTGGTTGGCTGTGGCTGTGTA.......................... 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGTGGTTGGCTGTGGCTGTGT........................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCTGTGTAGATGTGAGGCTGAATT.......... 26 0 1 4.00 4 0 0 1 2 1 0 0 0 0 0
.....................................................................................................................................................................................................................GTGGCTGTGTAGATGTGAGGCTGAAT........... 26 0 1 4.00 4 0 0 1 2 1 0 0 0 0 0
.......................................................................................................................................................AATACAATGTACGAGAAAAGAGAGTAT........................................................................ 27 0 1 4.00 4 0 0 2 2 0 0 0 0 0 0
...........................................................................................................................................................................................GACGCGATAGAAAAACGTGGT.......................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.............................................................................GAGTCTAGAGTGATAGCAACGAAAGAT.................................................................................................................................................. 27 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
.......................................TGGCGGATATCCATTCGACAA.............................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGCGTATGACGCGATAGAAAA................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAAACGTGGTTGGCTGTGGC................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
............................TGCGAAAACCCTGGCGGATAT......................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
....................................................................GTGTTCATCGAGTCTAGAGTG................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGCGTATGACGCGATAGAAA.................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................AGAGTGATAGCAACGAAAGATTAGCTT............................................................................................................................................ 27 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGCGTATGACGCGATAGAAAAACGT............................................. 26 0 1 3.00 3 0 2 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TGTGGCTGTGTAGATGTGAGGCTGAAT........... 27 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0
................................................................................................................................................................................................................TGGCTGTGGCTGTGTAGATGT..................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
....................................................................................GAGTGATAGCAACGAAAGATT................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGCGTATGACGCGATAGAAAAACGTGGT.......................................... 28 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0
..................................................................CGGTGTTCATCGAGTCTAGAGTGATAG............................................................................................................................................................. 27 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0
.......................................................................................................................................TTAAGATTCGTTAAGTAATACAATGT......................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................GCGTATGACGCGATAGAAAAA................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGTGGCTGTGTAGATGTGAGGCT............... 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
.........................................................................................................AGATTCTGTGATGAAATAACTACGAT....................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTGTGGCTGTGTAGATGTG.................... 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................GTGGCTGTGTAGATGTGAGGCTGAATT.......... 27 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0
...................................................................................................................................CGGTTTAAGATTCGTTAAGTAATAC.............................................................................................. 25 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGTGTAGATGTGAGGCTGAAT........... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCTGTGTAGATGTGAGGCTGAATTT......... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
................................................................................TCTAGAGTGATAGCAACGAAA..................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................AAGGACGGTGTTCATCGAGTCTAGAGT.................................................................................................................................................................. 27 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0
.AAGGAGTTTGACCTTTTTAGC.................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATGGCTGTGTAGATGTGAGGCTGAAT........... 26 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCTGTGTAGATGTGAGGCTGAAT........... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
................................................................................................................................GATCGGTTTAAGATTCGTTAA..................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGTGGCTGTGTAGATGTGAG.................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ACGCGATAGAAAAACGTGGTT......................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................ACGAAAGATTAGCTTCTGTGA...................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AACGTGGTTGGCTGTGGCTGT............................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................ACGGTGTTCATCGAGTCTAGAGTGAT............................................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
....................................................................................................AGATTAGCTTCTGTGATGAAAAAACT............................................................................................................................ 26 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0
....................................................................................................................................................................................................................TGTGGCTGTGTAGATGTGAGG................. 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................TCGGTTTAAGATTCGTTAAG.................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGTGGCTGTGTAGATGTGAGGCTGAAT........... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...............................................................GGACGGTGTTCATCGAGTCTAGAGTGAT............................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................CGAGTCTAGAGTGATAGCAA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTAGATGTGAGGCTGAATTTGAGGCCT.. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................CGGTTTAAGATTCGTTAAGTAATACAAT........................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................GAAATAACTACGATCGGTTTAAGAT............................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................GAGTCTAGAGTGATAGCAACG........................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AGATTCGTTAAGTAATACAATGT......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AATACAATGTACGAGAAAAGAGAGTATA....................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CGTATGACGCGATAGAAAAACGTGGT.......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CCGCGATAGAAAAACGTGGTTG........................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTTGGCTGTGGCTGTGTAGAT....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................CGGTGTTCATCGAGTCTAGAGTGATA.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................TGCGAAAACCCTGGCGGATATCCATT.................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................CGAAAGATTAGCTTCTGTGATGAAAT................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................ACGGTGTTCATCGAGTCTAGA.................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................ACGAAAGATTAGCTTCTG......................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................CTAGAGTGATAGCAACGAAAG.................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................TCGACAATAAGGACGGTGTTCATC............................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................CGCGATAGAAAAACGTGGTTGG....................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................GTCTAGAGTGATAGCAA.......................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........TGACCTTTTTAGCCTAGAATG............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................TCATCGAGTCTAGAGTGATAGCAA.......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGCGTATGACGCGATAGAAAAACGT............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................AGCCTAGAATGCGAAAACCCTGGCGG............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGGCTGTGGCTGTGTAGAT....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCTGTGTAGATGTGAGGCTGAATTT......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................AGATTAGCTTCTGTGATGAA.................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................GACGGTGTTCATCGAGTCTAG..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................TGAAATAACTACGATCGGTTTAAGAT............................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTGGCTGTGTAGATGTGAGGCTGAATTT......... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................CTGGCGGATATCCATTCG.................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................AAAACCCTGGCGGATATCCAT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTGAGGCTGAATTTGAG...... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................GCTTCTGTGATGAAATAA.............................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGTGGCTGTGTAGAT....................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGTTGGCTGTGGCTGTGTAG......................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAACGTGGTTGGCTGTGGCTGTGTAGAT....................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................TAGCCTAGAATGTGAAAAACGT.................................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCTGTGTAGATGTGAGGCTGAATT.......... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................TTAAGATTCGTTAAGTATTACAATGT......................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................GCTGTGGCTGTGTAGAT....................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TGTTCATCGAGTCTAGAGTGATAGCAA.......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................GCCTAGAATGCGAAAACCCTT................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................TCGAGTCTAGAGTGATAGCAA.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................TACGAGAAAAGAGAGTATATTGCGTAT............................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................GAGAGTATATTGCGTATGACGCGAT....................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GAGAGTATATTGCGTATGACG........................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................AGAGTGATAGCAACGAAAGATTAGAT............................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................TAGCTTCTGTGATGAAATAACTA........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.AAGGAGTTTGACCTTTTTAGCCTAGAAT............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............TTTTTAGCCTAGAATGCGAAA....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTGCGTATGACGCGATAGAAAAACGTGGT.......................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTGATGAAATAACTACGATC...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACAATGTACGAGAAAAGAGAGTATAT...................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGGCTGTGGCTGTGTAGATGT..................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGTTGGCTGTGGCTGTGTAGA........................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCGATAGAAAAACGTGGTTGGCTGT................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTGGCTGTGTAGATGTGAG.................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TAGCAACGAAAGATTAGCTTCTGTGA...................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................GATCGGTTTAAGATTCGTTAAGT................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GTGGTTGGCTGTGGCTGTGTAGAT....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................AGAGTGATAGCAACGAAAGATTAGCTTCT.......................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................CTACGATCGGTTTAAGATTCGTTAAGTC.................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CTGTGATGAAATAACTACGATCGG.................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ACGCGATAGAAAAACGTGGTTG........................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................CTAGAATGCGAAAACCCTGGCGGAT........................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCTGTGTAGATGTGAGGCTGAA............ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................GGTGTTCATCGAGTCTAGAGTGATAG............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GAAAAGAGAGTATATTGCGTA................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................GTGTAGATGTGAGGCTGAATT.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................CTACGATCGGTTTAAGATTCG......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGATTAGCTTCTGTGATGAAATAACT............................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TTAGCTTCTGTGATGAAATAA.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCTGTGTAGATGTGAGGC................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......TTTGACCTTTTTAGCCTA................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................GTTCATCGAGTCTAGAGTGATAGCAACG........................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GAAATAACTACGATCGGTTTA................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................CATCGAGTCTAGAGTGA................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................CTACGATCGGTTTAAGATTCGTTAAGT................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGGCTGTGGCTGTGTAGATG...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATGTGAGGCTGAATT.......... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGGCTGTGGCTGTG............................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................TTCTGTGATGAAATAACTACGATCGGT................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................GCGTATGACGCGATAGAAAAACGTGGT.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................CGGTGTTCATCGAGTCTAGAGTGATTG............................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CTGTGATGAAATAACTACGATCGGTT.................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GGGCGAGAAAAGAGAGAATATT..................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................AGCCTAGAATGCGAAAA...................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................CGAAAGATTAGCTTCTGTGATGAAAA................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................AAATGATAGCAACGAAAGATTAGCTTCT.......................................................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................GTTCATCGAGTCTAGAG................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................AGAGTGATAGCAACGAAAGATTAGATT............................................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTGTGGCTGTGTAGATGT..................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAACGAGAAAAGAGAGTATATT..................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCGATAGAAAAACGTGGTT......................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................CGAAAGATTAGCTTCTGTGATGAAAAAA.............................................................................................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CGTGGTTGGCTGTGGCTGTGTA.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................GCGGATATCCATTCGACAATA............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................GTCTAGAGTGATAGCAACGAA...................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................ACGAAAGATTAGCTTCTGTGATGAA.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................ACGAAGGATTAGCTTCTGTG....................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................AGAATGCGAAAACCCTGGCGGATATCCATT.................................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGTAGATGTGAGGCTGAAT........... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
........................AGAATGCGAAAACCCTGGCGGATAT......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AATACAATGTACGAGAAAAGAGAGT.......................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................ACTACGATCGGTTTAAGATTC.......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCGATAGAAAAACGTGGTTG........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGTATGACGCGATAGAAAAACGTGGT.......................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................TTTAGCCTAGAATGCGAAAACCCTGGC............................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AATACAATGTACGAGAAAAGAGAGAAT........................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................CATCGAGTCTAGAGTGATAGC............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATACAATGTACGAGAAAAGAGAGT.......................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................ATAGCAACGAAAGATTAGCTTCTG......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAACGTGGTTGGCTGTGGC................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTGTGGCTGTGTA.......................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TATAGTGCTAGCAAGGAAA..................................................................................................................................................... 19 3 20 0.50 10 0 0 0 0 0 8 0 2 0 0
............................................................................................................................................................................................................CCCTTGGCTGTGGCTGTGTAG......................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGTTAAATGATACAATGT......................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................GTGATGACATCACTAC.......................................................................................................................... 16 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGTAGATGTGAGCCTT.............. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..........................................................AATAAGGACGGTGTGCTTG............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGGCTGAATTTGTTGGCTG. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................GGAGATGTGAGCCTCAAT........... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:29935-30184 - dsi_2728 ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------GCTTTCTAATCGAAGACACTA-------CT--T--------------TATTGATGCTAG----------------CCAAATTCTAAGCAAT--TCATTATGTTACATGCTCTTTTCTCTCATATAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACACTCCGAC------TTAAACTCCGGAC----------A
droSec2 scaffold_14:43301-43550 - ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------GCTTTTTAATCGAAGACACTA-------CT--T--------------TATTGATGCTAG----------------CCAAATTCTAAGCAAT--TCATTATGTTACATGCTCTTTTCTCTCATATAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACACTCCGAC------TTAAACTCCGGAC----------A
dm3 chr2L:38337-38584 - ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGAACCGCCTATAGGTAAGCTGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGATCTCA-C------AATC---------------------------GTT--------------------------GCTTTCTAATCGATGACACTA-------CT--T--------------T-TTGATGCCAG----------------CAAAATTCCAAGCAAC--TCATTATGTTACATGCTCTTTTCTCTCATACAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------CCCGA-CACCGACACATC-------------TACACTCCGAC------TTAAA-CCCGGAC----------A
droEre2 scaffold_4929:64654-64909 - ATTCCTCAAACTGGAAAAATTGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----CATT---C--------------CTGCCGCAAGTAGC------TC---AGATCTCA-C------TATT---------------------------GTT--------------------------GCTTTCTAATCGATGACACTA-------CT--T--------------TATTGATGCTAG---------TCAA-CTCCAAATTCTATGCAAC--TCATTATGTTACATGCTCTTTTCTCTCATACAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACACTCCGAC------TTAAACTCCGGAC----------A
droYak3 2L:31834-32090 - ATTCCTCAAAGTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----CATT---C--------------CTGCCGCAAGT--C------TCACTAGATCTCA-C------TATC---------------------------GTT--------------------------GCTTTCTAATCGATGACACTA-------CT--A--------------TATTGATGCTAG---------TCAA-CTCAAAATTCTATGCAAC--TCATTATGTTACATGATCTTTTCTCTCATACAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACATTCCGAC------TTAAACTCCGGAC----------A
droEug1 scf7180000409154:35544-35806 - ATCCCTCAATCAGGAAAAATTGGATCGTATGCATTTGGAACAGCTTACAGGTAAGAAGT-----CACT------------------CTACTGCAAGTAGC------TT---ATCTCTCATC------CATC---------------------------GTC--------------------------GCTTTCGAATTGATGCAACTT-------TC--T--------------TACTGATACTAA--------ATAAA-CTTAAAATTCTACGCAAC--TTATCGTAATACATGCTATTTTCTCTCATGCAACGCATA--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACATATG-------------CACACTTCGAC-----CTCAAACTTCGGAC----------A
droBia1 scf7180000301455:42942-43205 - ATTCCCCAAACTGGCAAAATCGGATCATACGCTTTTGGAACGGCCTACAGGTAAGCTGT-----CATC---A--------------CCGCTGCAAGTAGC------TC---ATTTCACATC------TATC---------------------------GTC--------------------------GCTTTACAATTGATGCCACTA-------CT--T--------------AACTGATGCTAA--------ATCAA-TTCAAAATTCTCTGCAAC--TCATCGTATTACATGCTCTTTTCTCTCATAAAACGCATA--CTGCACTGTCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACATATC-------------TACCCTTCGAC-----CTCAAACTTCGGAC----------A
droTak1 scf7180000413017:531441-531704 + ATTCCCCAAAGTGGCAAAATCGGATCGTATGCTTTTGGAACCGCCTACAGGTAAGCTGT-----CATC---C--------------CTGCTGCAAGTAGA------TC---AGTTCTCATC------TATC---------------------------GTC--------------------------GCTTTTCAATTGATGCCACTA-------CT--T--------------TACTGATGCTAA--------ATCAA-GTCAAAATTCTATGCAAC--TCATCGTTTTACATGCTATTTTCTCTCATACAACGCATA--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACTTATC-------------CACACTTCGAC-----CGCAAACCCCGGAC----------A
droEle1 scf7180000487030:994-1257 + ATTCCCCAAGCTGGCAAGATCGGATCGTATGCCTTTGGAACGGCCTACAGGTAAGCAGT-----AATC---C--------------ATGCTGCAAGTAGA------TC---ATTTCTCATC------TATC---------------------------GTT--------------------------GCTTTTCAATTGATTCAACTA-------CT--T--------------TACTGATGCTAA--------ATCAA-GTCCAAATTTTATGCAAC--TCATCGTATACCATGCTCTTTTCTCTCATACATCGCATT--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACACGAC-------------CAAACTCCGAA-----CTCAAAATCTGGAC----------A
droRho1 scf7180000779252:91827-92090 + ATTCCCCAAGCTGGCAAGATCGGATCGTACGCCTTTGGAACGGCCTACAGGTAAGCCGT-----CATC---C--------------CTGCTGCAAGTAGC------TC---ATTTCACATC------TATC---------------------------GTC--------------------------GCTTTCCAATTTTTTAAACTA-------CT--T--------------TACTGATGCTAA--------ATCAA-GTCAAAATTCTGTGCAAT--TCATCGTATTACATGCTCTTTTCTCTCATACATCGCATA--CTGCACCATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACACGAC-------------GACACGCCGAC-----CTCATAATCCGGAC----------A
droFic1 scf7180000453904:1470705-1470961 - ATTCCGCCAGCTGGCAAAATTGGATCGTATGCCTTTGGAACGGCCTACAGGTAAGGACT-----CATC---C--------------CCGCTGCAAGCAG--------------TTTTCACA------TATC---------------------------GTC--------------------------GCTTCTGAATTGATACCACCA-------CT--T--------------TACCTACGCTAA--------ACCAA-ATCCAAATTCTATGCAAC----ATCATGTTACATGCTCTTTTCTCTCATACAACGCATA--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACGTA-CACCGACACAAC-------------CACAATCCGAC-----CTTTAACTCCGGAC----------A
droKik1 scf7180000302401:503163-503458 + ATCCCGCAAGCGGGCAAGATCGGATCGTACGCCTTTGGAACGGCCTACAGGTAAGCGGT-----CACC---C--A-CATAGCGTCATTGCA--AAGTAGCTAGCTCTC---AGCTCTCATT------AATC---------------------------GTT--------------------------GCTTTCGAATCGATGCCACCT-ACCA--CC--T----------------CTGATGCTAA--------ATCAA-GTCAAAATTCTATGCAAC--TCATCGTATTCCATGCTCTTTTTTCTCATGCAACGCATA--CTGCACTATCTCTAAA--TCTT-GCTCCA----------ATTGA-CACCGACACAACA------------CACACTCCGACGCGTACCCAAA-CCCGGACCCGACAACCGG
droAna3 scaffold_12916:2021717-2022006 - ATCCCGCAGGCCGGCAAGATCGGATCGTACGCCTTCGGAACGGCCTACAGGTAAGCCCGCAGGACATCATCCCGCTTCT--------TGCT--------CTTGCTCGT---AGAACTCATC------CTTC---------------------------G-T--------------------------GCTTCTCAATTGATGCCACTA--CTC--T-CTT--------------TACTGAT-------------------CTCCAAATTCTTCGCCACTCTCATCGTATTACATGCTCTCTTCTCTCATACAATGCATA--CTGCACTATCTTTAAA--TCTT-GCTCCAA---------ATCGA-CACCGACACCTCGAACACTGAACTCTAAACTACGAC-----CTCGAACTTCGAAC-----TATCCG
droBip1 scf7180000396728:675881-676170 - ATCCCCCAGGCCGGAAAAATCGGATCATACGCCTTCGGAACGGCCTACAGGTAAGCCAGCAGGACATCAACCCGCTTCTA--------GCT--------CTTGCTCGT---AGAACTCATC------CTTC---------------------------G-T--------------------------GCTTCTCAATTGATGCCACTA--CTC--T-CTT--------------TACTGAT-------------------CTCCAAATTTTACGCCACTCTCATCGTATTACATGCTCTCTTCTCTCATACAATGCATA--CTGCACTATCTTTAAA--TCTT-GCTCCAA---------ATCGA-CACCGACACCTCGAACACTGAACTCTAAACTACTAC-----CCCGAACTCCGGAC-----TATCCG
dp5 4_group2:107063-107362 + ATACCCCAGAGCGGGAAGCTTGGATCGTACGCCTTCGGAACAGCCTACAGGTAAGCAGC-----GATCCTCC--CTTCTA-----------GCAA--AGC------TT---GAGTGTCATGTACTTTCCTC---------------------------GTTGCTTATTTAACTGAAT-TGAATTCGC--T-CTGCATTGATGCTACT-CACTCTACC--T--------------TACTGAAGCTAA--------ATTGA-TTCTAAATTCTCCGCAAC--TCATCGTATTTCATGCTCT-TTCTCTCATACAATGCATTATCTGCACTATCTCTATATATCTT-GCTCCAACAACAAACCACCGACCACCGACACACC--------------AC------------------AATCCGAAC----------G
droPer2 scaffold_8:3787211-3787510 - ATACCCCAGAGCGGGAAGCTTGGATCGTACGCCTTCGGAACAGCCTACAGGTAAGCAGC-----GATCATCC--CTTCTA-----------GCAA--AGC------TT---GAGTGTCATGTACTTTCCTC---------------------------GTTGCTTATTTAACTGAAT-TGAATTCGC--T-CTGCATTGATGCTACT-CACTCTACC--T--------------TACTGAAGCTAA--------ATTGA-TTCTAAATTCTCCGCAAC--TCATCGTATTTCATGCTCT-TTCTCTCATACAATGCATTATCTGCACTATCTCTATATATCTT-GCTCCAACAACAAACCACCGACCACCGACACACC--------------AC------------------AATCCGAAC----------G
droWil2 scf2_1100000004851:131213-131445 + ATACCTCAATCGGGAAAGATTGGCTCATACGCCTTTGGAACTGCATATCGGTGAGCATA-----CTAA---C--------------TTGCTA---G-AGT------TC-----TTTTCATT------TTTT---------------------------TTCGCT---TTATCTGAAC-TAA-------------TTTTGATGCTATCT-------TA--T--------------CTCTGAAA--AA--------ATTGA-ATTCAAATTCTCTGCAAC--TTATCACATTACCCACTCTTTTCTCTCATACATTGCATT--CTGCACTATCTTTAAA--TCTATATTACA--------------------------------------------------------------ACACCAATC----------G
droVir3 scaffold_13246:170458-170734 + ATACCCAATCATGGAAAAATTGGGTCCTACACGTTCGGAACAGCTTACAGGTAAGTTAT-----GTGC---C----------------------------------------------ATTTAACTTC---CGCTTCATCTGTAGTGCTTCATCTGCCGTCGCTTA---A---AAAC-TAAATTTAT--T-GTCTATTGATGGTAATTTA--C--T-TTTTGCTATA-TT-------TTAAA--AAA-TGCATAACTGA-TTTTGAATTCTTTTCAAC--CCATTCTACC----ACTCTTTTTTCTTATACAATGCATA--CTGCACTATTTATATA--TTTT-ACTGCA----------AACGA-CAC------AAC-------------AA----CCGAC------TGAA--------------------
droMoj3 scaffold_6500:209631-209914 + ATACCAAATCACGGAAAGATCGGATCCTACACGTTCGGGACGGCTTACAGGTAAGTTCT-----GCGC---C------------------------C--------------GA------TTTGCCTCC---CCATCCATA-GTATTGTTTCATCTGCAGTCGCTTTCAAAAT------TGTATTTATTTTTTTTAATTGATGGTAATTTA--C--T-TTTTGCTTTAGTC-------TCAAC--AAA-TTCATAACTGATCTGAAATTTATTCTCCGC--CCA---TTTTAC-TACTCTCTTTTCTCATACAATGCATA--CTGCACTATCTCTATA--TTTT-ACTTCA----------ATTGA-CAC------ACC-------------AA----TCGAC------TCAA--------------------
droGri2 scaffold_15252:17072748-17073031 - ATACCCAATCACGGAAAAATCGGGTCCTACACATTTGGGACAGCTTACAGGTAAGTTAT-----AAGC---C--------------------------GT------TT---GGTTAA------CATTC---AAATC------CAGTGTTTCATCTGCCGTCTCTTC---A---AAACTCAAATTCGT--T-TTCTATTGATGGTAATTTA--T--T-TTT-GTC--AGTTTTTTTGTTGAAA--AAATTGCAAACCTAA-TTAAAAATTCTCTTCAAC--TCATTGTACTAC------TCTTATTTCATACAATGCATA--CTGCACTATCTCTCTATTATTT-ACTCCA----------AACGA-CAA------ACC-------------AA----CCGAC---------------TGAA----------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------GCTTTCTAATCGAAGACACTA-------CT--T--------------TATTGATGCTAG----------------CCAAATTCTAAGCAAT--TCATTATGTTACATGCTCTTTTCTCTCATATAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACACTCCGAC------TTAAACTCCGGAC----------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................T--------------------------GCTTTCTAATCGAAGACACTA-------C........................................................................................................................................................................................................................2312.00200000000002000000
.....................................................................................................................................................................................................CGAAGACACTA-------CT--T--------------TATTGATG..............................................................................................................................................................................................2212.00200000000002000000
.................................................................................................AGC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------.....................................................................................................................................................................................................................................................2112.00200000000001100000
..............................................................................................................................................................GTT--------------------------GCTTTCTAATCGAAGACA...................................................................................................................................................................................................................................2112.00200000000002000000
.................................TTTGGGACCGCCTATAGGTAA..........................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
..................................TTGGGACCGCCTATAGGTAAGCTGT-----................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000002000000
......................................GACCGCCTATAGGTAAGCTGT-----................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
.TTCCTCAAACTGGAAAAATCGGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................T-------TT-GCACCA----------ACCGA-CACCGAC...........................................................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................CTATCTTT-------TT-GCACCA----------ACCGA-..................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................CTCATATAACGCATA--CTGCGC.........................................................................................................2111.00100000000001000000
...............................................TAGGTAAGCTGT-----TATT---C--------------CT........................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..................................................................................................................TCTCA-C------TATC---------------------------GTT--------------------------GC...................................................................................................................................................................................................................................................1511.00100000000001000000
................................................................................................TAGC------TC---AGATCTCA-C------TATC---------------------------GT................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................CTCATATAACGCATA--CTGCCT.........................................................................................................2111.00100000000001000000
.........................CTTACGCTTTTGGGACCGCCT..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..................................................................................................................TCTCA-C------TATC---------------------------GTT--------------------------GCTTTCTAATA..........................................................................................................................................................................................................................................2411.00100100000000000000
................................................................................................................................................................................................................................................................................................................CTCATATAACGCATA--CTG............................................................................................................1811.00110000000000000000
..................ATCGGATCTTACGCTTTTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................TTGGGACCGCCTATAGGTAAG.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..............................................ATAGGTAAGCTGT-----TATT---C--------------CTG.......................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................TTTTGGGACCGCCTATAGGTA...........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
........................................................TGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGA..............................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
...........TGGAAAAATCGGATCTTACGCTTTT............................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.............GAAAAATCGGATCTTACGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.............................CGCTTTTGGGACCGCCT..................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.....TCAAACTGGAAAAATCGGATC......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.........ACTGGAAAAATCGGATCTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..........................................................T-----TATT---C--------------CTGCCACAAGTAGC------T.....................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................ATT---C--------------CTGCCACAAGTAGC------TC---A................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......AAACTGGAAAAATCGGATC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................TA--CTGCGCTATCTTT-------TT-GCACCA----------AC......................................................................2511.00100010000000000000
..................................................................................................GC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------G....................................................................................................................................................................................................................................................2111.00100100000000000000
............GGAAAAATCGGATCTT....................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
................................................................................................TAGC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------GCTTT................................................................................................................................................................................................................................................2711.00100000000001000000
......................GATCTTACGCTTTTGGGACCG.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................ATC-------------TACACTCCGAC------GA......................16200.05100000000000001000
droSec2
ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGATCTCA-C------TATC---------------------------GTT--------------------------GCTTTTTAATCGAAGACACTA-------CT--T--------------TATTGATGCTAG----------------CCAAATTCTAAGCAAT--TCATTATGTTACATGCTCTTTTCTCTCATATAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACACTCCGAC------TTAAACTCCGGAC----------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................T-------TT-GCACCA----------ACCGA-CACCGAC...........................................................2111.0010001
dm3
ATTCCTCAAACTGGAAAAATCGGATCTTACGCTTTTGGAACCGCCTATAGGTAAGCTGT-----TATT---C--------------CTGCCACAAGTAGC------TC---AGATCTCA-C------AATC---------------------------GTT--------------------------GCTTTCTAATCGATGACACTA-------CT--T--------------T-TTGATGCCAG----------------CAAAATTCCAAGCAAC--TCATTATGTTACATGCTCTTTTCTCTCATACAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------CCCGA-CACCGACACATC-------------TACACTCCGAC------TTAAA-CCCGGAC----------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................TAGGTAAGCTGT-----TATT---C--------------CTGC......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AAACTGGAAAAATCGGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................ATCTTACGCTTTTGGAACCGCCTATAG..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GC------TC---AGATCTCA-C------AATC---------------------------GTT--------------------------G....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TTTTCTCTCATACAACGCATA--CTGC...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............AAAATCGGATCTTACGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCAAACTGGAAAAATCGGATCTTACGC................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATTCCTCAAACTGGAAAAATTGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----CATT---C--------------CTGCCGCAAGTAGC------TC---AGATCTCA-C------TATT---------------------------GTT--------------------------GCTTTCTAATCGATGACACTA-------CT--T--------------TATTGATGCTAG---------TCAA-CTCCAAATTCTATGCAAC--TCATTATGTTACATGCTCTTTTCTCTCATACAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACACTCCGAC------TTAAACTCCGGAC----------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................A-CTCCAAATTCTATGCAAC--T.......................................................................................................................................................2011.0010000010
droYak3
ATTCCTCAAAGTGGAAAAATCGGATCTTACGCTTTTGGGACCGCCTATAGGTAAGCTGT-----CATT---C--------------CTGCCGCAAGT--C------TCACTAGATCTCA-C------TATC---------------------------GTT--------------------------GCTTTCTAATCGATGACACTA-------CT--A--------------TATTGATGCTAG---------TCAA-CTCAAAATTCTATGCAAC--TCATTATGTTACATGATCTTTTCTCTCATACAACGCATA--CTGCGCTATCTTT-------TT-GCACCA----------ACCGA-CACCGACACATC-------------TACATTCCGAC------TTAAACTCCGGAC----------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ATCCCTCAATCAGGAAAAATTGGATCGTATGCATTTGGAACAGCTTACAGGTAAGAAGT-----CACT------------------CTACTGCAAGTAGC------TT---ATCTCTCATC------CATC---------------------------GTC--------------------------GCTTTCGAATTGATGCAACTT-------TC--T--------------TACTGATACTAA--------ATAAA-CTTAAAATTCTACGCAAC--TTATCGTAATACATGCTATTTTCTCTCATGCAACGCATA--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACATATG-------------CACACTTCGAC-----CTCAAACTTCGGAC----------ASizeHit CountTotal NormTotal
No Reads
droBia1
ATTCCCCAAACTGGCAAAATCGGATCATACGCTTTTGGAACGGCCTACAGGTAAGCTGT-----CATC---A--------------CCGCTGCAAGTAGC------TC---ATTTCACATC------TATC---------------------------GTC--------------------------GCTTTACAATTGATGCCACTA-------CT--T--------------AACTGATGCTAA--------ATCAA-TTCAAAATTCTCTGCAAC--TCATCGTATTACATGCTCTTTTCTCTCATAAAACGCATA--CTGCACTGTCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACATATC-------------TACCCTTCGAC-----CTCAAACTTCGGAC----------ASizeHit CountTotal NormTotal
No Reads
droTak1
ATTCCCCAAAGTGGCAAAATCGGATCGTATGCTTTTGGAACCGCCTACAGGTAAGCTGT-----CATC---C--------------CTGCTGCAAGTAGA------TC---AGTTCTCATC------TATC---------------------------GTC--------------------------GCTTTTCAATTGATGCCACTA-------CT--T--------------TACTGATGCTAA--------ATCAA-GTCAAAATTCTATGCAAC--TCATCGTTTTACATGCTATTTTCTCTCATACAACGCATA--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACTTATC-------------CACACTTCGAC-----CGCAAACCCCGGAC----------ASizeHit CountTotal NormTotal
No Reads
droEle1
ATTCCCCAAGCTGGCAAGATCGGATCGTATGCCTTTGGAACGGCCTACAGGTAAGCAGT-----AATC---C--------------ATGCTGCAAGTAGA------TC---ATTTCTCATC------TATC---------------------------GTT--------------------------GCTTTTCAATTGATTCAACTA-------CT--T--------------TACTGATGCTAA--------ATCAA-GTCCAAATTTTATGCAAC--TCATCGTATACCATGCTCTTTTCTCTCATACATCGCATT--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACACGAC-------------CAAACTCCGAA-----CTCAAAATCTGGAC----------ASizeHit CountTotal NormTotal
No Reads
droRho1
ATTCCCCAAGCTGGCAAGATCGGATCGTACGCCTTTGGAACGGCCTACAGGTAAGCCGT-----CATC---C--------------CTGCTGCAAGTAGC------TC---ATTTCACATC------TATC---------------------------GTC--------------------------GCTTTCCAATTTTTTAAACTA-------CT--T--------------TACTGATGCTAA--------ATCAA-GTCAAAATTCTGTGCAAT--TCATCGTATTACATGCTCTTTTCTCTCATACATCGCATA--CTGCACCATCTCTTTA--TCTT-GCTCCA----------ACCGA-CACCGACACGAC-------------GACACGCCGAC-----CTCATAATCCGGAC----------ASizeHit CountTotal NormTotal
No Reads
droFic1
ATTCCGCCAGCTGGCAAAATTGGATCGTATGCCTTTGGAACGGCCTACAGGTAAGGACT-----CATC---C--------------CCGCTGCAAGCAG--------------TTTTCACA------TATC---------------------------GTC--------------------------GCTTCTGAATTGATACCACCA-------CT--T--------------TACCTACGCTAA--------ACCAA-ATCCAAATTCTATGCAAC----ATCATGTTACATGCTCTTTTCTCTCATACAACGCATA--CTGCACTATCTCTTTA--TCTT-GCTCCA----------ACGTA-CACCGACACAAC-------------CACAATCCGAC-----CTTTAACTCCGGAC----------ASizeHit CountTotal NormTotal
No Reads
droKik1
ATCCCGCAAGCGGGCAAGATCGGATCGTACGCCTTTGGAACGGCCTACAGGTAAGCGGT-----CACC---C--A-CATAGCGTCATTGCA--AAGTAGCTAGCTCTC---AGCTCTCATT------AATC---------------------------GTT--------------------------GCTTTCGAATCGATGCCACCT-ACCA--CC--T----------------CTGATGCTAA--------ATCAA-GTCAAAATTCTATGCAAC--TCATCGTATTCCATGCTCTTTTTTCTCATGCAACGCATA--CTGCACTATCTCTAAA--TCTT-GCTCCA----------ATTGA-CACCGACACAACA------------CACACTCCGACGCGTACCCAAA-CCCGGACCCGACAACCGGSizeHit CountTotal NormTotal
No Reads
droAna3
ATCCCGCAGGCCGGCAAGATCGGATCGTACGCCTTCGGAACGGCCTACAGGTAAGCCCGCAGGACATCATCCCGCTTCT--------TGCT--------CTTGCTCGT---AGAACTCATC------CTTC---------------------------G-T--------------------------GCTTCTCAATTGATGCCACTA--CTC--T-CTT--------------TACTGAT-------------------CTCCAAATTCTTCGCCACTCTCATCGTATTACATGCTCTCTTCTCTCATACAATGCATA--CTGCACTATCTTTAAA--TCTT-GCTCCAA---------ATCGA-CACCGACACCTCGAACACTGAACTCTAAACTACGAC-----CTCGAACTTCGAAC-----TATCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................AGATCGGATCGTACGCCTTCGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
ATCCCCCAGGCCGGAAAAATCGGATCATACGCCTTCGGAACGGCCTACAGGTAAGCCAGCAGGACATCAACCCGCTTCTA--------GCT--------CTTGCTCGT---AGAACTCATC------CTTC---------------------------G-T--------------------------GCTTCTCAATTGATGCCACTA--CTC--T-CTT--------------TACTGAT-------------------CTCCAAATTTTACGCCACTCTCATCGTATTACATGCTCTCTTCTCTCATACAATGCATA--CTGCACTATCTTTAAA--TCTT-GCTCCAA---------ATCGA-CACCGACACCTCGAACACTGAACTCTAAACTACTAC-----CCCGAACTCCGGAC-----TATCCGSizeHit CountTotal NormTotal
No Reads
dp5
ATACCCCAGAGCGGGAAGCTTGGATCGTACGCCTTCGGAACAGCCTACAGGTAAGCAGC-----GATCCTCC--CTTCTA-----------GCAA--AGC------TT---GAGTGTCATGTACTTTCCTC---------------------------GTTGCTTATTTAACTGAAT-TGAATTCGC--T-CTGCATTGATGCTACT-CACTCTACC--T--------------TACTGAAGCTAA--------ATTGA-TTCTAAATTCTCCGCAAC--TCATCGTATTTCATGCTCT-TTCTCTCATACAATGCATTATCTGCACTATCTCTATATATCTT-GCTCCAACAACAAACCACCGACCACCGACACACC--------------AC------------------AATCCGAAC----------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATACCCCAGAGCGGGAAGCTTGGATCGTACGCCTTCGGAACAGCCTACAGGTAAGCAGC-----GATCATCC--CTTCTA-----------GCAA--AGC------TT---GAGTGTCATGTACTTTCCTC---------------------------GTTGCTTATTTAACTGAAT-TGAATTCGC--T-CTGCATTGATGCTACT-CACTCTACC--T--------------TACTGAAGCTAA--------ATTGA-TTCTAAATTCTCCGCAAC--TCATCGTATTTCATGCTCT-TTCTCTCATACAATGCATTATCTGCACTATCTCTATATATCTT-GCTCCAACAACAAACCACCGACCACCGACACACC--------------AC------------------AATCCGAAC----------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATACCTCAATCGGGAAAGATTGGCTCATACGCCTTTGGAACTGCATATCGGTGAGCATA-----CTAA---C--------------TTGCTA---G-AGT------TC-----TTTTCATT------TTTT---------------------------TTCGCT---TTATCTGAAC-TAA-------------TTTTGATGCTATCT-------TA--T--------------CTCTGAAA--AA--------ATTGA-ATTCAAATTCTCTGCAAC--TTATCACATTACCCACTCTTTTCTCTCATACATTGCATT--CTGCACTATCTTTAAA--TCTATATTACA--------------------------------------------------------------ACACCAATC----------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATACCCAATCATGGAAAAATTGGGTCCTACACGTTCGGAACAGCTTACAGGTAAGTTAT-----GTGC---C----------------------------------------------ATTTAACTTC---CGCTTCATCTGTAGTGCTTCATCTGCCGTCGCTTA---A---AAAC-TAAATTTAT--T-GTCTATTGATGGTAATTTA--C--T-TTTTGCTATA-TT-------TTAAA--AAA-TGCATAACTGA-TTTTGAATTCTTTTCAAC--CCATTCTACC----ACTCTTTTTTCTTATACAATGCATA--CTGCACTATTTATATA--TTTT-ACTGCA----------AACGA-CAC------AAC-------------AA----CCGAC------TGAA--------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................CTGTAGTGCTTCATCTGCCGTCGC.............................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATACCAAATCACGGAAAGATCGGATCCTACACGTTCGGGACGGCTTACAGGTAAGTTCT-----GCGC---C------------------------C--------------GA------TTTGCCTCC---CCATCCATA-GTATTGTTTCATCTGCAGTCGCTTTCAAAAT------TGTATTTATTTTTTTTAATTGATGGTAATTTA--C--T-TTTTGCTTTAGTC-------TCAAC--AAA-TTCATAACTGATCTGAAATTTATTCTCCGC--CCA---TTTTAC-TACTCTCTTTTCTCATACAATGCATA--CTGCACTATCTCTATA--TTTT-ACTTCA----------ATTGA-CAC------ACC-------------AA----TCGAC------TCAA--------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATACCCAATCACGGAAAAATCGGGTCCTACACATTTGGGACAGCTTACAGGTAAGTTAT-----AAGC---C--------------------------GT------TT---GGTTAA------CATTC---AAATC------CAGTGTTTCATCTGCCGTCTCTTC---A---AAACTCAAATTCGT--T-TTCTATTGATGGTAATTTA--T--T-TTT-GTC--AGTTTTTTTGTTGAAA--AAATTGCAAACCTAA-TTAAAAATTCTCTTCAAC--TCATTGTACTAC------TCTTATTTCATACAATGCATA--CTGCACTATCTCTCTATTATTT-ACTCCA----------AACGA-CAA------ACC-------------AA----CCGAC---------------TGAA----------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:37 PM