ID:

dsi_27270

 Coordinate:

3r:4499605-4499754 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.4 -3.5 -3.5 -3.5

Flybase annnotation

five_prime_UTR [3r_4499127_4499971_-]; exon [3r_4499127_4499971_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GAGTTGTGCTTCAGTCAACAATAAAAACAAAAACAGTGTTTAAAGCTAGTGAAATGATCTTCCATAAATAAATTTTCAAAATTTATTTGAGAGCAAAAATGAATTGAAAGAAAATGCCAAGAAAGTGCAGCAAAAAATCAACAACGATGCTGTTGGAGAGTCGAAACTAGGCTAAATATCTTTGCATACTTTTGGGAAAGTTGTGCGGTACACACACACACACACCCGTTCGTACACACACACACAGGAC
*******************************************************************************************************************************************************.((.......((((..((.((...........)).))..))))...))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................TCTTTGCATACTTTTGGGAAA................................................... 21 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................AACGATGCTGTTGGAGAGC......................................................................................... 19 1 1 1.00 1 0 1 0 0 0
.....................................GTTTAAAGCTAGTGAAATGATCTTCC........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................................TGTGCATACTTTTGGGAAAGTTGTGC............................................ 26 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................ATACTTTTGGGAAAGTTGTGCGGTAC....................................... 26 0 1 1.00 1 0 1 0 0 0
.........................................AAAGCTAGTGAAATGATCTTCCATAAAT..................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..................................AGTGTTTAAAGCTAGTGAAATGAT................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................GTTGGAGAGTCGAAACTAGGCT............................................................................. 22 0 1 1.00 1 0 1 0 0 0
......TGCTTCAGTCAAAAAAAAA................................................................................................................................................................................................................................. 19 2 15 0.07 1 0 0 0 1 0
................................................GTGAAATGTTTTTCCGTAAA...................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

CTCAACACGAAGTCAGTTGTTATTTTTGTTTTTGTCACAAATTTCGATCACTTTACTAGAAGGTATTTATTTAAAAGTTTTAAATAAACTCTCGTTTTTACTTAACTTTCTTTTACGGTTCTTTCACGTCGTTTTTTAGTTGTTGCTACGACAACCTCTCAGCTTTGATCCGATTTATAGAAACGTATGAAAACCCTTTCAACACGCCATGTGTGTGTGTGTGTGGGCAAGCATGTGTGTGTGTGTCCTG
***************************************************.((.......((((..((.((...........)).))..))))...))******************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
...................................CACAAATTTCGATCACTTTACTAGAAGGT.......................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0
.......................CTTTGTTTTTGCCACAAGTTT.............................................................................................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0
...........................GTTTTTGCCACAAGTTTTGAT.......................................................................................................................................................................................................... 21 3 9 0.22 2 0 2 0 0 0 0 0
................................................................................................................TTACGGTTCTCTCAAGTC........................................................................................................................ 18 2 10 0.20 2 0 0 2 0 0 0 0
........................................................................AAAATTTTTAATTAAACTCT.............................................................................................................................................................. 20 2 17 0.18 3 2 1 0 0 0 0 0
...................................................................................................................................................................................GAAACAGATGTAAACCCTTTC.................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0
...........................................................................................................................................TTGTTGCTACGAGACGCTCT........................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0
...........GTCAGTCGTTACTTTTGTTGT.......................................................................................................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 1 0 0
......................................................................TTAAAAGTTTTAAATATA.................................................................................................................................................................. 18 1 16 0.06 1 0 0 1 0 0 0 0
.......................................................................................ACTCTAGATTTTACTTAA................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0
....ACACGAAGTCCGCTGTTGT................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................TGTGTGTGTGTGTCC.. 15 0 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 08:53 AM