ID:

dsi_27255

 Coordinate:

3l:11508626-11508775 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.4 -29.2 -29.2

Flybase annnotation

CDS [3l_11508776_11509330_-]; exon [3l_11508776_11509551_-]; intron [3l_11508457_11508775_-]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-
mature
  1. 2r:801687-801706 +
  2. dsi_27255  3l:11508638-11508657 -
  3. 3r:339759-339778 -
  4. 3r:698099-698118 +
  5. x:7779-7798 -
  6. node_113074:38-57 -
  7. node_36732:38-57 -
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCACGATGCCTACAAGGGATTCCAGTGCGAGTGCCCAGCGGGCTGGCAAGTGAGTAAGCGGGGGCGTCTCTCAAGAGATTATGGGGCGTATTTTCACTTGGAAGTAGAACTTATATGACTGGAATGGTTTAATTACAATGAAACCATATAAAGTATGCTTCATCATGTTTGTCCGTATGAACGTCGATATCTCGATAAATAAGAGAGCCAAAAATCCAAATCACACTTTGAATTTGGAATACAGTTATT
**************************************************((((..(((((.....(((((....)))))((((((...(((((((....)))))))...))))))..(((...(((((((..........)))))))....))).)))))..))))((((((....))))))(((((....)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
...ACGATGCCGACCAGGGA...................................................................................................................................................................................................................................... 17 2 12 4.50 54 0 24 25 0 0 1 2 2 0 0
...................................................................................................TGGACGGAGAACTTATAT..................................................................................................................................... 18 2 5 1.40 7 0 0 0 6 0 0 0 0 1 0
..............................AGTGCCCAGCGGGCTGGCAAGG...................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................CCAGTGCGAGTGCCCAGCGGG............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................ATTCCAGTGCGAGTGCCCAGCGGGCT............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................ATTCCAGTGCGAGTGCCCAGC.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTCCGTATGAACGTCGAAATCTTTATA.................................................... 28 3 6 0.33 2 0 0 1 0 0 0 1 0 0 0
..........................................................................................................................................................................TGTCCGTATGAACGTCGAAATCTTGATT.................................................... 28 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
......................CCAGTGCGCGTGCCCAGCCGG............................................................................................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTGTCCGTATGAACGTCGA.............................................................. 20 0 7 0.29 2 0 0 0 0 0 2 0 0 0 0
...ACGATGCCGACTAGGGA...................................................................................................................................................................................................................................... 17 2 7 0.29 2 0 1 0 0 0 0 1 0 0 0
...................................................................................................TGGACGTAGAACTGATAT..................................................................................................................................... 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................GTCCGTATGAACGTCGAAATCTCTATA.................................................... 27 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
....CGATGCCGACCAGGGAT..................................................................................................................................................................................................................................... 17 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTTTGTCCGTATGAACGTCGA.............................................................. 21 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................TCCGTATGAACGTCGATA............................................................ 18 0 20 0.10 2 0 1 0 0 0 0 0 1 0 0
..........................................................................................................AGAAGATATATGACTGTAAT............................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................TTGTCCGTATGAACGTCGA.............................................................. 19 0 10 0.10 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................TCTGAATTTGGCATACAATTA.. 21 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0
..........................TGCGAGTGCCTAGTGGG............................................................................................................................................................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTCCGTATGAACGTCGATATC.......................................................... 22 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................TTGTCCGTATGAACGT................................................................. 16 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................TCCGTATGAACGTCGATATCT......................................................... 21 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTCCGTATGAACGTCGATT............................................................ 20 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................TCCGTATGAACGTCGAT............................................................. 17 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................GTCCGTATGAACGTCGATA............................................................ 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TGTCCGTATGAACGTCGATA............................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TGTCCGTATGAACGTCGTTT............................................................ 20 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGGTGCTACGGATGTTCCCTAAGGTCACGCTCACGGGTCGCCCGACCGTTCACTCATTCGCCCCCGCAGAGAGTTCTCTAATACCCCGCATAAAAGTGAACCTTCATCTTGAATATACTGACCTTACCAAATTAATGTTACTTTGGTATATTTCATACGAAGTAGTACAAACAGGCATACTTGCAGCTATAGAGCTATTTATTCTCTCGGTTTTTAGGTTTAGTGTGAAACTTAAACCTTATGTCAATAA
**************************************************((((..(((((.....(((((....)))))((((((...(((((((....)))))))...))))))..(((...(((((((..........)))))))....))).)))))..))))((((((....))))))(((((....)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902008
ovaries
............................................................................................................................................................ACGAAGTAGTACAAACAGGCATACT..................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................TGATCTTGAATATACTGA................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................ATTTCATACGAACTAGTACAAA............................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................CGAACTAGTACAATCAGGCG......................................................................... 20 3 4 0.50 2 0 0 0 2 0 0 0 0
........................................................................................................................................................................AAACAGGCATACTTGCAGCTA............................................................. 21 0 3 0.33 1 0 0 0 0 1 0 0 0
........................................................................................................GATCTTGAATATACTGAGTT.............................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTCTCGGTATTTAGGATTGGTG......................... 22 3 10 0.10 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................GGCATACTTGCAGCTATAGAG........................................................ 21 0 13 0.08 1 0 0 0 0 0 0 1 0
.....................................................................................................GGTGATCTTGAATATACTG.................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................AACAGGCATACTTGCAGCTCTAGAGC....................................................... 26 1 14 0.07 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................TACTTGCAGCTATAG.......................................................... 15 0 15 0.07 1 0 0 0 0 1 0 0 0
.........................................................................................................ATCTTGAATATACTGAATTA............................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 1 0 0
..................................GGGTCGCGCGACAGTT........................................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTTAGGTTGAGTGT........................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:26 AM