ID:

dsi_2725

 Coordinate:

3l:1570740-1570889 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.6 -18.6 -18.6 -18.3

Flybase annnotation

CDS [3l_1570890_1570946_-]; exon [3l_1570890_1570946_-]; intron [3l_1569785_1570889_-]

Repeatable elements

NameClassFamilyStrand
CT-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTCCTGAGCGCAAGAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCTGGCCGGAATCCGAAACTTGAATCCCTCGACAACCGTAGCTTTGTGTTTGTTTCCTTTGCTCTTTGTTTGGACTCTACAGTCATGACTTTTGATTTGTTCCTTATCGTACATAGTAAACTGTAAACACGTGCGCTTAGAGCGTGAAAACCAATGATACTATGTAACTATCAATCAACTGCTTAATACATT
**************************************************************...................................((....(((((((.....((((((...(((.(((.....(((((((.......))))).))......))).))).))))))...))))))).....))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
.........................................GAAAGATAGGTGAGAATCCT............................................................................................................................................................................................. 20 3 4 10.50 42 25 0 9 0 0 0 7 1 0 0 0
.......................................................................................................................................................................TACATAGTAAACTGTAAACACGTGCGCT....................................................... 28 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................GTAAACACGTGCGCTTAGAGCG................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TACATAGTAAACTGTAAACACGTGCGC........................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCTTATCGTACATAGTAAACTGTAAACACG............................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..TCCTGAGCGCAAGAAGAAGAAGAAGT.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................TGACTTTTGATTTGTTCTT........................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................GCCGGAATCCGAAACTTGAATCCCT................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................ACTTGAATCCCTCGACAACCGTAGC...................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAAACTGTAAACACGTGCGCTTAGAGCG................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GTAAACACGTGCGCTTA..................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................GAGGGGTAAGAGTCCTGGA.......................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TAAACTGTAAACACGTGCGCTTAGAGC................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
........................................CGAAAGATAGGTAAGAATCCT............................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................GACCGGAATTCGAAACGTGAA........................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................GTTCCTTATCGTTAACAGT........................................................................... 19 3 20 0.20 4 2 0 0 0 0 0 0 2 0 0 0
..........................................................................................CAACCGTAGCTTTTT................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
.........................................GAAAGACAGGTGAGAATCCT............................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
.............CGAAGAAGAAGAAGTCGA........................................................................................................................................................................................................................... 18 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................GCACGTTGTTTGGACTC................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................ACAACCGTAGCTTTTTT................................................................................................................................................ 17 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
............................................................................................................................................TCCTGACTTTTGACTTGGTC.......................................................................................... 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................ACAACCGTAGCTTTTTTT............................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
..................................AGCCCAAGGATGAGAGGTA..................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................CTTTAGTCCCTCGACA.............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................AGAGTCTACAGTCACGAC....................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................CAGACCGGAATTCGAAAC............................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................CGTTGTTTGGACACTACG............................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TCAGGACTCGCGTTCTTCTTCTTCTTCAGCTTCTTCGTGTTCTTTCTCTCCATTCTCAGGACCGGCCTTAGGCTTTGAACTTAGGGAGCTGTTGGCATCGAAACACAAACAAAGGAAACGAGAAACAAACCTGAGATGTCAGTACTGAAAACTAAACAAGGAATAGCATGTATCATTTGACATTTGTGCACGCGAATCTCGCACTTTTGGTTACTATGATACATTGATAGTTAGTTGACGAATTATGTAA
*******************************************************...................................((....(((((((.....((((((...(((.(((.....(((((((.......))))).))......))).))).))))))...))))))).....))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................................................AAACGAGAAAGAAACCTGAGA.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............TCTTCTTCTTCTTCAGCTTCTT....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTGGTTACTATGATACAT.......................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................CCTGAGATGTCAGTACTTGAA.................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTATCTCGCCCTATTGGTTACT................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.........................................................................TTTGAACTTAGAGAG.................................................................................................................................................................. 15 1 16 0.31 5 0 0 0 0 0 2 0 2 0 1
.....................................................................................................................................CCATGTCAGTACTGAAAA................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................TTCCATTTTCAGGACCGGTCT...................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
.......................CTGCAGCTTCTTCGTTTTCTC.............................................................................................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................TTGGTTTCTATGATA............................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................GGCCTTAAGCTTTGCACTA........................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................................TAGAGAGCTGGTGGCGTCG...................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:1570690-1570939 - dsi_2725 AGTCCTGAGCGCAAGA------AGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCGA----AACTT----------------------------GAATCCCTC-GACAACCGTAGC--TTTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droSec2 scaffold_2:1687325-1687574 - AGTCCTGAGCGCAAGA------AGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCGA----AACTT----------------------------GAATCCCTC-GACAACCGTAGC--TTTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------TCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
dm3 chr3L:1660909-1661158 - AGTCCTGAGCGCAAGA------AGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCGA----AACTT----------------------------GAAACCCTC-GACAATCGTAGC--TTTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TCTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droEre2 scaffold_4784:1640404-1640659 - AGTCCTGAGCGCAAGAAGGACAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCAA----AACTT----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTAT-G-------------ATTTGTTTCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droYak3 3L:1611647-1611902 - dya_666 AGTCCTGAGCGCAAGAAGGACAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCAA----AACTT----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGGTT---GGACTC---TACA----------------------------------G--TCATGTT----------------------------------TTTT-G-------------ATTTGTTTCT-------TACCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droEug1 scf7180000409007:481774-482030 - AGTCCTGAGCGCAAGAAGGATAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGCCCT-GG-CC------GGAATATAA----AACTT----------------------------CGACCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-TT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCACGAT----------------------------------TTTC-G-------------TTTTGTTTCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------T-TGTAAACA------CG-TGCGCTTAGAGCGCGAAA-----------------AA---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droBia1 scf7180000300910:1782761-1783023 - AGTCCTGAGCGCAAGAAGGACAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGGGTCCT-GG-CC------GGCAGGCTC----AACTG----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAT----------------------------------TTTT-G-------------GTTCCTTCCT-------TATCG-----------TAC-----------ATAGTAAT--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGCGAAAAC-----------CAAAAA---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droTak1 scf7180000415095:108884-109142 + AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GTAACCGAA-A--AACTG----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGT-----------------------------------TTTT-G-------------GTTTCTTCCTTA-----TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAAAAAAGAAA--------------------------------------------ATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droEle1 scf7180000491249:3911705-3911969 + AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGAGTGCT-GG-CC------GGAAAGCAA----ATCTA----------------------------CAATCCTTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGATTTT-------------------------------TTTG-G-------------TTTTGTTCTTTA-----TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------A-TGTAAACA------CG-TACGCTTAGAGCGTGAAAA--------------AAAA---------------------------TCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droRho1 scf7180000776850:283770-284022 + AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAACACAA----ATCTT----------------------------CAATCCTTC-GACAACCGTAGT--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAT----------------------------------TTTC-G-------------TTTTGTTCTT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------A-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------------------------------------AATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droFic1 scf7180000454113:419826-420080 + AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCGAAGAAGCATAAGAAAGAGAGGTAAGAGTCCT-CG-CC------GGAACCCTA----ATTTG----------------------------TAATCCTTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAT----------------------------------TTTC-G-------------TTTCGTTCTT-------TATCG-----------TAC-----------ATAGTA-A--------------------------------------------------------------------C-TATAAACA------CG-TGCGCTTAAGGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droKik1 scf7180000302577:133264-133554 - AGTCCTGAGCGCAAAAAGGACAAGAAGAAAAAGTCCAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG--GGCCCCCGGAATCACA----ATCCT----------------------------GCCGCCTT----CAACCGTAGCTCTCTGTGTTTATGT--T-AC-CTTT-------T--TGCTCTGTTTTTTATTTTGAGAACTT---TACA----------------------------------GTTTCATGATTTTATGTTGTCC--TT----AATGGTT-AT---CCTTC-G-------------GT---TTCGT-------TATCG-----------TAC-----------ATAGTAAA------------------------------------------------------------------------------------------ACTTAGAGCGTGACGACAAC----------AAAA---------------------------CCAATGATT-TTTTTGTAAA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droAna3 scaffold_13337:1176545-1176819 + AGTCCTGACCGCAAGAAGGACAAGAAGAAGAAGTCTAAGAAGCACAAGAAAGAGAGGTAAGA--CCT-GGTCC------GGCACCCCC----ATCCT----------------------------CCAGCCTCG-AACAATCGTAGCAATCTGTGTTT--GATTT-TC-GT-T-------T--TGCTCCT-----TA-------AACAGTA-AACA----------------------------------G--TCATGAGA---------------------------------TTTTAGTTTCCTCCTTTCGGTAT-TCC-T-----CTTATCA-----------AAC-----------ATAGTAAA--------------------------------------------------------------------A-TGTAAACA----CACA-TTCGCTTAGAGCGTGACA-----------------AA---------------------------CCAATGAAC---CTTGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
droBip1 scf7180000396371:1508786-1509072 + AGTCCTGACCGCAAAAAGGAGAAAAAGAAGAAGTCAAAGAAGCACAAGAAAGAGAGGTAAG--CCCT-GGTCC------GGTACCCCC----ATCCT----------------------------CCAGCCTCC-AACAATCGTAGCAATCTGTGTTT--GATTT-TC-GT-T-------T--TGCTCCT---------T---AAACTATAATACA----------------------------------G--TCATGAGT---------------------------------TTTTAGTTTCTTTGGTTCGGTAT-TTCCT-------TATCATACCATAAACATAC-----------ATAGTAAA--------------------------------------------------------------------T-TGTAAACA----CACA-TTCGCTTAGAGCGTGACAA----------------TA---------------------------CCAATGAAA--CT-TGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TT
dp5 XR_group6:7807787-7808106 - AGTCCTGAGCGCAAAAAGGACAAGAAAAAGAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGCA--AT-AGACT------GAAGCCCAG----ATC-------------------CTGCAGATCCTGCGGCCTTCAAACAGTTGTAGCTCTCTGTGTTA--GTTTTGTC-GT-TTCTTTCGT--TGCTCCT-----TGGTT---GGACTC---TACA----------------------------------G--TCATGAACTT-------------------------------TTTC-G-------------GTTTATCCTTTAATCCTTATCG-----------TACATAGTCC----ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------ATTTGTGCCTAGAGCGTGACAAAAAAAAAATACATAAAAA---------------------------CCAAAGAAT-CTTTTGT-AA-CTATC--A---AACTATCAAATTGCTTAATACA----TT
droPer2 scaffold_27:647368-647685 + AGTCCTGAGCGCAAAAAGGACAAGAAAAAGAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGCA--AT-AGACT------GAAGCCCAG----ATC-------------------CTGCAGATCCTGCGGCCTTCAAACAGTTGTAGCTCTCTGTGTTA--GTTTTGTC-GT-TTCTTTCGT--TGCTCCT-----TGGTT---GGACTC---TACA----------------------------------G--TCATGAACTT-------------------------------TTTC-G-------------GTTTATCCTTTAATCCTTATCG-----------TACATAGTCC----ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------ATTTGTGCCTAGAGCGTGACAAAAAAAAAA--CATAAAAA---------------------------CCAAAGAAT-CTTTTGT-AA-CTATC--A---AACTATCAAATTGCTTAATACA----TT
droWil2 scf2_1100000004511:865812-866091 - AGTCCTGAACGCAAAAAGGACAAGAAGAAAAAGTCCAAAAAGCACAAGAAGGAAAGGTAAGCA--AT-GACAT------CAAATTATG-A--TAC-T----------------------------AAAACCAAA-GACAATCGTAGA--TCTGTGTTT--AG--T-TT-CT-----TTCAT--TGCTCTT----TTATTTT--GAATTT---TG--------------------------TGTTTT-------------------CTGTTTTTTTTTTCAAATGATTTGA---CTTTT-A-------------GT---TTTCT-------TAACG-----------TAA-----------ATAATAAA--------------------------------------------------------------------CATGTAGACA-------------------AAATGAAA------------------ACAAATGATATAACAAATGAAAAA----CC--------------A-AA-C---C--AAACA-----ACAATGGCTTAATACA----TT
droVir3 scaffold_13049:2278402-2278719 - dvi_18039 AGTCCGGAGCGTCGCAAGGATAAGAAGAAGAAGTCCAAGAAGCACAAGAAAGAAAGGTAAGAG--CT-CGAAA------GTAGCCC-A----AGCACC---------------------------GAGTCCTAA-CCCACTTGTAGC--TCTCTGTGT--TT--T-AA-CT---------A--GTTTCTT-----TATTT---CGAAAA---AAAA-----------------AAACAAATCTTTTTGCAAATTCATGAATTTATTTGTTCCAT-TTGTAAA--------CT-----------------------------------------------------------------------------CTATTTGA--TTTGATTTATCT-------TC-AAAACA--------------TTCTATTCTTGTACGT-GTTAGACAAATGCAAA-TTTGCCAAAAAAAAAAAA------------------A---------------------------CGTAACATT--TTTTGT-AATTTAACAAA---A-----ACAACTGCTTAATACA----TT
droMoj3 scaffold_6654:1585918-1586194 + dmo_2270 AGTCCGGAGCGCCGCAAGGATAAGAAGAAAAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGAG--CTCGG-CA------GAAATCGAA-AAAAAAAA----------------------G-----AAAACC------TACTCGTAGC--TGTCTG------T--T-CA-AC---------T--AGTTTTC-----TATTT---AAAAAA---AAAA-----------------AAACATATATTTT-------------------CTGTTTCATATTGTAAAAGTTGAAACTATTTTTAATTTCTCTTG-TTGTTGT-TG-------------------------------------------------------------------------------------------------------------------------------------------CC-----------AAAACAAACA----------AA-------------------AATTGAAC-ACGAAACTTTTTGT-AA-TTAAC--A---AAGAAAACAACTGCTTAATATACATTTT
droGri2 scaffold_15110:3314727-3315121 - AGTCCTGAGCGCCGCAAGGACAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAAAGGTAAGAA--CT-CGAAA-------GAATCAGTCACAAGCACTGAGTCTTGTCCAAGTTGTGTAGC-------------------------C--TCTGTGTTT--AT--T-CAACT---------AGTTGTTTCT-----TATTT---ACACTT---TACAATCTTCTGTTTACCAAAA---TACTCTTTTTGAAA--TCATGAA----------------------------------TTTT----------------TATGTTCTC-------TATC-TATTGTT----TATATATTCCGTACATTGTAAAACTGTTTGGCTTTTGATTTCCCTGTTGTTTTCCAA--TATTTTTTTGTTTTGTTTCTA---TTGTAC---------------------TTGTTGAAAACGTGATAAGAACAAAA--TAACAAAA-------CTAAGTAAACGCAAAACT--GAAACGAAT--CTTTGT-AA-TTAAC--A---A-----ACAACTGCTTAATACT----TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTCCTGAGCGCAAGA------AGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCGA----AACTT----------------------------GAATCCCTC-GACAACCGTAGC--TTTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCT......................................................................................................................2813.00300000021000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACA------CG-TGCGCTTAGAGCG...............................................................................................................2211.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGC.......................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................CCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-............................................................................................................................3011.00100000001000000000
..TCCTGAGCGCAAGA------AGAAGAAGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
.....................................................................G-CC------GGAATCCGA----AACTT----------------------------GAATCCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.............................................................................................ACTT----------------------------GAATCCCTC-GACAACCGTAGC--..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................TAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCG...............................................................................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACA------CG-TGCGCTTA....................................................................................................................1711.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................TAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGC................................................................................................................2711.00100000000000001000
droSec2
AGTCCTGAGCGCAAGA------AGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCGA----AACTT----------------------------GAATCCCTC-GACAACCGTAGC--TTTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------TCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................G-------------ATTTGTTCCT-------TATCG-----------TA.......................................................................................................................................................................................................................................1811.0010010
dm3
AGTCCTGAGCGCAAGA------AGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCGA----AACTT----------------------------GAAACCCTC-GACAATCGTAGC--TTTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TCTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................AGTCGAAGAAGCACAAGAAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGTCGAAGAAGCACAAGAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AGAAGTCGAAGAAGCACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GAAGCACAAGAAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAACA------CG-TGCGCTTAGAGC................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAGTCGAAGAAGCACAAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AGGTAAGAGTCCT-GG-CC------GGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAGAAGAAGTCGAAGAAGCACAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGTCCTGAGCGCAAGA------AGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AA-CTATC--A---A-----TCAACTGCTTAA..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................GAGAGGTAAGAGTCCT-GG-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................AGAAGAAGTCGAAGAAGCACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAGA------AGAAGAAGAAGTCGAAGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAGAAGTCGAAGAAGCACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AAGTCGAAGAAGCACAAGAAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAGAAGTCGAAGAAGCACAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGTCGAAGAAGCACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAGAAGAAGTCGAAGAAGCACAAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGAAGAAGAAGTCGAAGAAGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............AAGA------AGAAGAAGAAGTCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GAGGTAAGAGTCCT-GG-CC------GGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AAGCACAAGAAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTGTGTTT--GT--T-TC-CT---------T--TGCTCT......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................AGAAGAAGTCGAAGAAGCACAAGAAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AGAAGCACAAGAAAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................GAAGTCGAAGAAGCACAAGAAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGCAAGA------AGAAGAAGAAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................AGAAGTCGAAGAAGCACAAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AGAGGTAAGAGTCCT-GG-CC------GGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGA------AGAAGAAGAAGTCGAAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTG.............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................AAGTCGAAGAAGCACAAGAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTCCTGAGCGCAAGA------AGAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CATGAC----------------------------------TTTT-G-------------ATTTGTTCCT-------TATCG-----------T........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................AGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-............................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACA------CG-TGCGCTTAGAGCGT..............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................AAGTCGAAGAAGCACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GAAGAAGCACAAGAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................CGAAGAAGCACAAGAAAGAGAGGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTCGAAGAAGCACAAGAAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TT--GT--T-TC-CT---------T--TGCTCTT-----TCTT............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGCAAGA------AGAAGAAGAAGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................GGTAAGAGTCCT-GG-CC------GGAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TCCGA----AACTT----------------------------GAAACCCTC-GACAATCGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGAGCGCAAGA------AGAAGAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAGAAGAAGTCGAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CAAGA------AGAAGAAGAAGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGTCCTGAGCGCAAGAAGGACAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCAA----AACTT----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAC----------------------------------TTAT-G-------------ATTTGTTTCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........CAAGAAGGACAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1922.5050000410
.....................AAGAAGAAGAAGTCGAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AA-CTATC--A---A-----TCAACTGC..............1911.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------C...........................................................2211.0010100000
............................................................................................................................................................TT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACT...................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..............................................................GTCCT-GG-CC------GGAATCCAA----AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
droYak3
AGTCCTGAGCGCAAGAAGGACAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAATCCAA----AACTT----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGGTT---GGACTC---TACA----------------------------------G--TCATGTT----------------------------------TTTT-G-------------ATTTGTTTCT-------TACCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............GAAGGACAAGAAGAAGAAGTCGAAGAAGCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3212.00200000000002
................................................................................................................................................................GT--T-TC-CT---------T--TGCTCTT-----TGGTT---GGACT...................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
..........................................................................................................................................................................................................................................................................................................................................TACCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGT..........................................................................................................................................2011.00100000010000
...................................GAAGAAGCACAAGAAAGAGAGGTAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAAA------------------A---------------------------CCAATGATA--CTATG............................................2411.00101000000000
...........CAAGAAGGACAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110000000000
droEug1
AGTCCTGAGCGCAAGAAGGATAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGCCCT-GG-CC------GGAATATAA----AACTT----------------------------CGACCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-TT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCACGAT----------------------------------TTTC-G-------------TTTTGTTTCT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------T-TGTAAACA------CG-TGCGCTTAGAGCGCGAAA-----------------AA---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droBia1
AGTCCTGAGCGCAAGAAGGACAAGAAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGGGTCCT-GG-CC------GGCAGGCTC----AACTG----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAT----------------------------------TTTT-G-------------GTTCCTTCCT-------TATCG-----------TAC-----------ATAGTAAT--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGCGAAAAC-----------CAAAAA---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droTak1
AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GTAACCGAA-A--AACTG----------------------------CAATCCCTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGT-----------------------------------TTTT-G-------------GTTTCTTCCTTA-----TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------CG-TGCGCTTAGAGCGTGAAAAAAAGAAA--------------------------------------------ATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGAGTGCT-GG-CC------GGAAAGCAA----ATCTA----------------------------CAATCCTTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGATTTT-------------------------------TTTG-G-------------TTTTGTTCTTTA-----TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------A-TGTAAACA------CG-TACGCTTAGAGCGTGAAAA--------------AAAA---------------------------TCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droRho1
AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG-CC------GGAACACAA----ATCTT----------------------------CAATCCTTC-GACAACCGTAGT--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAT----------------------------------TTTC-G-------------TTTTGTTCTT-------TATCG-----------TAC-----------ATAGTAAA--------------------------------------------------------------------A-TGTAAACA------CG-TGCGCTTAGAGCGTGAAA------------------------------------------------AATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droFic1
AGTCCTGAGCGCAAGAAGGACAAGAAGAAAAAGTCGAAGAAGCATAAGAAAGAGAGGTAAGAGTCCT-CG-CC------GGAACCCTA----ATTTG----------------------------TAATCCTTC-GACAACCGTAGC--TCTGTGTTT--GT--T-TC-CT---------T--TGCTCTT-----TGTTT---GGACTC---TACA----------------------------------G--TCATGAT----------------------------------TTTC-G-------------TTTCGTTCTT-------TATCG-----------TAC-----------ATAGTA-A--------------------------------------------------------------------C-TATAAACA------CG-TGCGCTTAAGGCGTGAAA------------------A---------------------------CCAATGATA--CTATGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droKik1
AGTCCTGAGCGCAAAAAGGACAAGAAGAAAAAGTCCAAGAAGCACAAGAAAGAGAGGTAAGAGTCCT-GG--GGCCCCCGGAATCACA----ATCCT----------------------------GCCGCCTT----CAACCGTAGCTCTCTGTGTTTATGT--T-AC-CTTT-------T--TGCTCTGTTTTTTATTTTGAGAACTT---TACA----------------------------------GTTTCATGATTTTATGTTGTCC--TT----AATGGTT-AT---CCTTC-G-------------GT---TTCGT-------TATCG-----------TAC-----------ATAGTAAA------------------------------------------------------------------------------------------ACTTAGAGCGTGACGACAAC----------AAAA---------------------------CCAATGATT-TTTTTGTAAA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
droAna3
AGTCCTGACCGCAAGAAGGACAAGAAGAAGAAGTCTAAGAAGCACAAGAAAGAGAGGTAAGA--CCT-GGTCC------GGCACCCCC----ATCCT----------------------------CCAGCCTCG-AACAATCGTAGCAATCTGTGTTT--GATTT-TC-GT-T-------T--TGCTCCT-----TA-------AACAGTA-AACA----------------------------------G--TCATGAGA---------------------------------TTTTAGTTTCCTCCTTTCGGTAT-TCC-T-----CTTATCA-----------AAC-----------ATAGTAAA--------------------------------------------------------------------A-TGTAAACA----CACA-TTCGCTTAGAGCGTGACA-----------------AA---------------------------CCAATGAAC---CTTGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........CAAGAAGGACAAGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331010000
droBip1
AGTCCTGACCGCAAAAAGGAGAAAAAGAAGAAGTCAAAGAAGCACAAGAAAGAGAGGTAAG--CCCT-GGTCC------GGTACCCCC----ATCCT----------------------------CCAGCCTCC-AACAATCGTAGCAATCTGTGTTT--GATTT-TC-GT-T-------T--TGCTCCT---------T---AAACTATAATACA----------------------------------G--TCATGAGT---------------------------------TTTTAGTTTCTTTGGTTCGGTAT-TTCCT-------TATCATACCATAAACATAC-----------ATAGTAAA--------------------------------------------------------------------T-TGTAAACA----CACA-TTCGCTTAGAGCGTGACAA----------------TA---------------------------CCAATGAAA--CT-TGT-AA-CTATC--A---A-----TCAACTGCTTAATACA----TTSizeHit CountTotal NormTotal
No Reads
dp5
AGTCCTGAGCGCAAAAAGGACAAGAAAAAGAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGCA--AT-AGACT------GAAGCCCAG----ATC-------------------CTGCAGATCCTGCGGCCTTCAAACAGTTGTAGCTCTCTGTGTTA--GTTTTGTC-GT-TTCTTTCGT--TGCTCCT-----TGGTT---GGACTC---TACA----------------------------------G--TCATGAACTT-------------------------------TTTC-G-------------GTTTATCCTTTAATCCTTATCG-----------TACATAGTCC----ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------ATTTGTGCCTAGAGCGTGACAAAAAAAAAATACATAAAAA---------------------------CCAAAGAAT-CTTTTGT-AA-CTATC--A---AACTATCAAATTGCTTAATACA----TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........CGCAAAAAGGACAAGAAAAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
AGTCCTGAGCGCAAAAAGGACAAGAAAAAGAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGCA--AT-AGACT------GAAGCCCAG----ATC-------------------CTGCAGATCCTGCGGCCTTCAAACAGTTGTAGCTCTCTGTGTTA--GTTTTGTC-GT-TTCTTTCGT--TGCTCCT-----TGGTT---GGACTC---TACA----------------------------------G--TCATGAACTT-------------------------------TTTC-G-------------GTTTATCCTTTAATCCTTATCG-----------TACATAGTCC----ATAGTAAA--------------------------------------------------------------------C-TGTAAACA------ATTTGTGCCTAGAGCGTGACAAAAAAAAAA--CATAAAAA---------------------------CCAAAGAAT-CTTTTGT-AA-CTATC--A---AACTATCAAATTGCTTAATACA----TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................CTTTCGT--TGCTCCT-----TGGTT---GGACT...................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................................AGAAGCACAAGAAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
................................................................................................................................................................GTTTTGTC-GT-TTCTTTCGT--TGCT........................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droWil2
AGTCCTGAACGCAAAAAGGACAAGAAGAAAAAGTCCAAAAAGCACAAGAAGGAAAGGTAAGCA--AT-GACAT------CAAATTATG-A--TAC-T----------------------------AAAACCAAA-GACAATCGTAGA--TCTGTGTTT--AG--T-TT-CT-----TTCAT--TGCTCTT----TTATTTT--GAATTT---TG--------------------------TGTTTT-------------------CTGTTTTTTTTTTCAAATGATTTGA---CTTTT-A-------------GT---TTTCT-------TAACG-----------TAA-----------ATAATAAA--------------------------------------------------------------------CATGTAGACA-------------------AAATGAAA------------------ACAAATGATATAACAAATGAAAAA----CC--------------A-AA-C---C--AAACA-----ACAATGGCTTAATACA----TTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................AAAGCACAAGAAGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1819.00990000
................AGGACAAGAAGAAAAAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
...................................CAAAAAGCACAAGAAGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
....................CAAGAAGAAAAAGTCCAAAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
................................................................................................T----------------------------AAAACCAAA-GACAATCGTAGA--TCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
droVir3
AGTCCGGAGCGTCGCAAGGATAAGAAGAAGAAGTCCAAGAAGCACAAGAAAGAAAGGTAAGAG--CT-CGAAA------GTAGCCC-A----AGCACC---------------------------GAGTCCTAA-CCCACTTGTAGC--TCTCTGTGT--TT--T-AA-CT---------A--GTTTCTT-----TATTT---CGAAAA---AAAA-----------------AAACAAATCTTTTTGCAAATTCATGAATTTATTTGTTCCAT-TTGTAAA--------CT-----------------------------------------------------------------------------CTATTTGA--TTTGATTTATCT-------TC-AAAACA--------------TTCTATTCTTGTACGT-GTTAGACAAATGCAAA-TTTGCCAAAAAAAAAAAA------------------A---------------------------CGTAACATT--TTTTGT-AATTTAACAAA---A-----ACAACTGCTTAATACA----TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................TCTCTGTGT--TT--T-AA-CT---------A--GTTTCT......................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................GAAGAAGAAGTCCAAGAAGCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
.........................AGAAGAAGTCCAAGAAGCACAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
..............................AAGTCCAAGAAGCACAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
.......................GAAGAAGAAGTCCAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
AGTCCGGAGCGCCGCAAGGATAAGAAGAAAAAGTCAAAGAAGCACAAGAAAGAGAGGTAAGAG--CTCGG-CA------GAAATCGAA-AAAAAAAA----------------------G-----AAAACC------TACTCGTAGC--TGTCTG------T--T-CA-AC---------T--AGTTTTC-----TATTT---AAAAAA---AAAA-----------------AAACATATATTTT-------------------CTGTTTCATATTGTAAAAGTTGAAACTATTTTTAATTTCTCTTG-TTGTTGT-TG-------------------------------------------------------------------------------------------------------------------------------------------CC-----------AAAACAAACA----------AA-------------------AATTGAAC-ACGAAACTTTTTGT-AA-TTAAC--A---AAGAAAACAACTGCTTAATATACATTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...CCGGAGCGCCGCAAGGATAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................................TCAAAGAAGCACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
AGTCCTGAGCGCCGCAAGGACAAGAAGAAAAAGTCGAAGAAGCACAAGAAAGAAAGGTAAGAA--CT-CGAAA-------GAATCAGTCACAAGCACTGAGTCTTGTCCAAGTTGTGTAGC-------------------------C--TCTGTGTTT--AT--T-CAACT---------AGTTGTTTCT-----TATTT---ACACTT---TACAATCTTCTGTTTACCAAAA---TACTCTTTTTGAAA--TCATGAA----------------------------------TTTT----------------TATGTTCTC-------TATC-TATTGTT----TATATATTCCGTACATTGTAAAACTGTTTGGCTTTTGATTTCCCTGTTGTTTTCCAA--TATTTTTTTGTTTTGTTTCTA---TTGTAC---------------------TTGTTGAAAACGTGATAAGAACAAAA--TAACAAAA-------CTAAGTAAACGCAAAACT--GAAACGAAT--CTTTGT-AA-TTAAC--A---A-----ACAACTGCTTAATACT----TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:28 AM