ID:

dsi_27232

Coordinate:

3l:8089371-8089520 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.5	-21.4	-21.3

Flybase annnotation

five_prime_UTR [3l_8089350_8089370_-]; CDS [3l_8088998_8089349_-]; exon [3l_8088998_8089370_-]; intron [3l_8089371_8092547_-]

No Repeatable elements found

mature

star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCACTATTATCAGCATCTAATCATTATTATGACAGCATTCAATGGATGTTCAGTAACGAGCTTGGAAAAACTGTTCAACACGAGAATATCTAGAAAACTAAAGTGTTATGTATGGGTTATGTTGATCTTCTGTTTAAAAGCCTCTAACTTATTAGTTGTTTCTCGACTTTTGCAATAAACATTTTTTATTGCCATCTCAGCACTCATCGCTCAACATGACCATGGAGAAGGTGTTAACGAGTCGCAGTCA ************************************************.......((((...........))))....((((((.........((((((...((((.....(((((...((((........)))).))))).))))...))))))..))))))......((((((((.....))))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M023 head
....................................................................................................................................................................GACTTTTGCAATAAACAT....................................................................	18	0	2	1.00	2	2	0	0	0	0	0	0
.............................................ACGTTCAGTAGCGAGCT............................................................................................................................................................................................	17	2	7	0.29	2	0	2	0	0	0	0	0
......................................................AACGGGCTTGGAAAAA....................................................................................................................................................................................	16	1	8	0.25	2	0	0	0	1	0	1	0
..................................................................AATACTGTTCAACGCGA.......................................................................................................................................................................	17	2	10	0.20	2	0	0	0	2	0	0	0
...............................................GTTCAGTAGCGAGCT............................................................................................................................................................................................	15	1	6	0.17	1	0	1	0	0	0	0	0
...................................................................................................................................................................TGACTTTTGCAACAAACATTTTTT...............................................................	24	2	6	0.17	1	0	0	1	0	0	0	0
....................................................................................................................................................................AACTTTTGCAACAAACCTTTTTT...............................................................	23	3	6	0.17	1	0	0	1	0	0	0	0
...................................................................................................................................................................TGACTTTTGCAACAAACATTTTTTC..............................................................	25	3	6	0.17	1	0	0	1	0	0	0	0
......................................................AACGGGCTTGGAAAA.....................................................................................................................................................................................	15	1	20	0.10	2	0	1	0	0	0	1	0
....................................................................................................................TTATGTGGAGCTTCTGTT....................................................................................................................	18	2	10	0.10	1	0	0	0	0	1	0	0
.......................................................................................................................TGTTGATCGTCTGGTTAAA................................................................................................................	19	2	13	0.08	1	0	0	0	0	1	0	0
........................................................................................................................................................................TTTACAATAACCATTTTTTAAT............................................................	22	3	17	0.06	1	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................TGGGGAAGGTGTTAA.............	15	1	18	0.06	1	0	0	0	0	1	0	0
.......................................................ACGGGCTTGGAAAAA....................................................................................................................................................................................	15	1	18	0.06	1	0	0	0	0	0	1	0
....................................................GTAACTGGCTTGGAAAA.....................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................TCGGCCCTCATCGCTC......................................	16	2	20	0.05	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................CATGACCATGATGAAGG...................	17	2	20	0.05	1	0	1	0	0	0	0	0

Anti-sense strand reads

AGTGATAATAGTCGTAGATTAGTAATAATACTGTCGTAAGTTACCTACAAGTCATTGCTCGAACCTTTTTGACAAGTTGTGCTCTTATAGATCTTTTGATTTCACAATACATACCCAATACAACTAGAAGACAAATTTTCGGAGATTGAATAATCAACAAAGAGCTGAAAACGTTATTTGTAAAAAATAACGGTAGAGTCGTGAGTAGCGAGTTGTACTGGTACCTCTTCCACAATTGCTCAGCGTCAGT ************************************************.......((((...........))))....((((((.........((((((...((((.....(((((...((((........)))).))))).))))...))))))..))))))......((((((((.....))))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
..................................................................................................ATTTCACAATACATACCC......................................................................................................................................	18	0	1	1.00	1	1	0	0	0
.....................................................................................TATCGATCTTTTGATT.....................................................................................................................................................	16	1	11	0.18	2	0	2	0	0
......................................................................................ATCGATCTTTTGATT.....................................................................................................................................................	15	1	20	0.15	3	0	3	0	0
...............................................................................................................................................................................................................GCGAGTTGTACAGGTACA.........................	18	2	11	0.09	1	0	0	0	1
.......................................................................ACAAGGTGTGCTCTTAA..................................................................................................................................................................	17	2	12	0.08	1	0	0	1	0
....................................................................................TTATCGATCTTTTGGTTTCT..................................................................................................................................................	20	3	20	0.05	1	0	1	0	0
.......................................................................ACAAGGTGTGCTCTGA...................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0
....................................................................................TTATAGATTTTTTGATT.....................................................................................................................................................	17	1	20	0.05	1	0	1	0	0

Generated: 04/24/2015 at 10:44 AM