ID:

dsi_27229

 Coordinate:

2l:2757661-2757870 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.3 -2.2 -2.2

Flybase annnotation

exon [2l_2757871_2758063_-]; CDS [2l_2757871_2758063_-]; CDS [2l_2757459_2757660_-]; exon [2l_2757365_2757660_-]; intron [2l_2757661_2757870_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTCGAGTGGGTACTCCATTATCTAGCATTCATCACTATCTATAAAGCTGTAATGCTCTTTAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGCCTATTAAGATGAAAGTTAAATAGGAACGATTTCAACGTCGATTAATCCGACAAATTACTTTATCCCCTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAGTTGACCCAAACGAAGAGCG
*****************************************************************************************************************************************......((((((....((((....))))......)))))).......****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
.......................................................................................................................................................................................................................................................................................GACTCGCTTCAGTTGACCCAAACGAA..... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......CGCCTGTCCATCCTGTATCCT........................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GATGAAATCCTTCGAGTGATCGAC............................ 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0
.........CTGTCCATCCTGTATCCTGCC........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................GATAATTATTTAATGAAGTA......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................CTGAAAACTAAGTACTAACCT.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGTTAAATAGGAACGATTTC.......................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............TCCATTCTGTATCCTGCCACCACTGGGCGC............................................................................................................................................................................................................................................................................ 30 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................TTCGATGAAATCCTTCGAGTGATCGA............................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................AATCGATCGTGGACTTAATC...................................................................................................................................................................................... 20 3 5 0.40 2 0 0 0 1 0 0 0 1 0
..................................................................................................................................................................................................................................................................................TGATCGTCTCGCGTCAGATG................ 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TTAAATAGGAAGGATATCA......................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CCGATAATTATTTAGTGA............................................................................................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CCGTCGAGTGATCGA............................. 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................ATCGTCTCGCGTCAGATGA............... 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GGAACGTTTTAAACCTCGA.................................................................................. 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................CGAAAGGTTTCAACGTCGA.................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................CCAACGATTTAAACGTCGA.................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTCGAAGCGGACAGGTAGGACATAGGACGGTGGTGACCCGCGTTGAAGCTCACCCATGAGGTAATAGATCGTAAGTAGTGATAGATATTTCGACATTACGAGAAATCGTTCGTTAGCACGTGAATTAGCGTAATCGTCTATTAATAAATTACTTCATAATAACGACTTTTGATTCATGATTGGAACGGATAATTCTACTTTCAATTTATCCTTGCTAAAGTTGCAGCTAATTAGGCTGTTTAATGAAATAGGGGAACGTCACTTTAGGAAGCTCACTAGCTGAGCGAAGTCAACTGGGTTTGCTTCTCGC
******************************************************************************************************************************......((((((....((((....))))......)))))).......***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
..............................................AGCGAACCCATGAAGTAATAGAT................................................................................................................................................................................................................................................. 23 3 1 2.00 2 0 0 0 2 0 0 0
......................................................................................................................CGTGAATTAGTGTAATCGTCT........................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
.........GACAGGTAGGACATAGGACGG........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
TTCGAAGCGGACAGGTAGGAC................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................TTTGATTCATGATTG................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
...GAGGCGGACAGGTAGGACAT............................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
.....GGCGGACAGGTAGGACATAGG............................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................GAGGTTGTGGATCGTAAGTAG........................................................................................................................................................................................................................................ 21 3 2 1.00 2 0 0 2 0 0 0 0
..TGAGGCGGACAGGTAGGACAT............................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................TCTGATTCATGATTGG............................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TTTGATTCATGATTGG............................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0
.........................................GTTGAAGCTCACCCATGAGGTA....................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0
............AGGTAGGACATAGGACGGT....................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
............................GGTGGTGACCCGCGTTGAAG...................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..................GACATAGGCCGGTGCTGACG................................................................................................................................................................................................................................................................................ 20 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................................................................................CTTGATTCATGATTGG............................................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................GAGGTTATGAATCGTAAGTAG........................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 1 0 0 0 0
.........................................................GAGGTAGTGAATCGTAAGTAG........................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0
.................................................................................................ATGAGAAATCCTTCGTTGGC................................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0
....................................................................................................................................................................CCCTGTGATTCATGATTGG............................................................................................................................... 19 3 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................................................................................................TGATTCATGATTGGC.............................................................................................................................. 15 1 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................................................................GATTCATGATTGGTACGAAA........................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0
.............................................................................................................................................................................TCATGGTTGGAACAGATG....................................................................................................................... 18 3 20 0.15 3 0 0 3 0 0 0 0
.................................................................................................................................................................................................................CCTTGCTAAGCTTGCA..................................................................................... 16 2 20 0.15 3 0 0 0 1 0 0 2
.......................................................................................................................................................................TGTGATTCATGATTG................................................................................................................................ 15 1 7 0.14 1 1 0 0 0 0 0 0
.........................................................................................TCGACATTACCAGAA.............................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................ACCGGCACTTTAGGCAGCTC.................................... 20 3 9 0.11 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................TGTAGCTACTTAGTCTGTTT..................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0
.......................................................................................................................................................................GTTGATTCATGATTG................................................................................................................................ 15 1 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................................................TCATGATTGGGCCGGA......................................................................................................................... 16 2 14 0.07 1 0 0 0 0 1 0 0
.......................................................................................................................................................................CTTGATTCATGATTG................................................................................................................................ 15 1 14 0.07 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CGACACGTTAGGCAGCTCA................................... 19 3 15 0.07 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................GGCGGTTTAATGAAA.............................................................. 15 1 17 0.06 1 0 0 0 0 0 0 1
.......................................................................................................................................................................ATTGATTCATGATTG................................................................................................................................ 15 1 19 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CTTGCTAAACGTGCAG.................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
.......................................................................................................................................................................TCGGATTCATGATTGG............................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CACTCTAGGCAGCTCA................................... 16 2 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:2757611-2757920 - dsi_27229 AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTCGAGTGGGTACTCC-AT-----------------------------------------TATCTA----------------------------GCAT-------------------------------------TC---------------------------------------------------------------------------------ATCACTATCTATAAA-----GCTGTAATGCTCTTTAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGCCTAT------------TAAGATGAAAGTTAAATAGGAACGATTTCA--------------------------------------------------------------------------ACGT---------------------------------------CG----A-------TTAATCCGACAAA------------------TTA----------C--------------------------TTTATCCCCTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAGTTGACCCAAAC---GAAGAGCG-------------------------------------------------------------------------------
droSec2 scaffold_5:1036216-1036518 - AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTCGAGTGGGTACTC-TAG--------------------------------------CAT---G------------------------------------------------------------------------C---------------------------------------------------------------------------------ATCACTATCTATAAA-----GCTGTAATGCTCTTTAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGAATAT------------TACGATGAAAGTTAAATAGGAACGATTTCA--------------------------------------------------------------------------ACGT---------------------------------------CG----A-------TAAATCGGACAAA------------------TTA----------C--------------------------TTTATCCCCTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTCCAGTTGACCCAAAC---GAAGAGCG-------------------------------------------------------------------------------
dm3 chr2L:2877340-2877660 - AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTTGAGTGGGTATTCC-AA-----------------------------------------TATCTA----------------------------GCAT-------------------------------------TC---------------------------------------------------------------------------------ATCATTATCTATAAAGTAATGCTGTAATGCACTTTAGCAAACAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGCATAT------------AATAATGGAAGTTAAATAGGAACGATTTCA--------------------------------------------------------------------------AGGT---------------------------------------CA----A-------TTAATCCGACAAA------------------TTA----------CATTTAACTA--------------------TATCCTTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTCCAGTTGACCCAAAC---AAAGAGTG-------------------------------------------------------------------------------
droEre2 scaffold_4929:2924352-2924670 - AAGCTTCGCCTATCCATCCTTTATCCTGCCACCACTGGTCGCAACTTCGAGTGGGTAATCT-AA-----------------------------------------TATCAA----------------------------ACAC-------------------------------------TC---------------------------------------------------------------------------------ATCATTATCTATAAA-----TCTGTAGGGCTCTATAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTGCTTAATGAAGTATAAGTGCTGAAAACTAATCTTTAA------------------------C--------------------GACTTCGTTT-AATGTACATCATAAT---------------------------------TTTTCTA----------CCTCAACGA---------------------------------------CG----C-------TTAATCCGAGAAG------------------TTA----------CATTTCACTA---------------TTTTCTTTCCTTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAGTTGACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------
droYak3 2L:2872129-2872464 - AAGCTTCGCCTATCCATCCTTTATCCTGCCACTACTGGGCGCAATTTCGAGTGGGTACCCA-TA-----------------------------------------TATCTA----------------------------ACA--------------------------------------TC---------------------------------------------------------------------------------ATTACTAACTATAAG-----TCTGTAATGCTCTGTAGCAAACAATCGTGCACTTAATTGCATTAGCAGATAATTGTTTAATGAAGT-TAAGTGGTGTAAACTAAACTTT------------------------AACGATGGATGTAAATTAGGATCCATTTTGTTT-AATGCATATCATTAG---------------------------------TTTTATA----------TCTAAACGA---------------------------------------CG----A-------TTAATCTGATAAG------------------TAT----------CATTTCAAT----------------CCCTCTCTTCTTTGCAGTGAAATCCTTCGGGTGATCGACTCGCTTCAGTTGACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------
droEug1 scf7180000409554:3228772-3229081 + AAGCTTCGTCTTTCCATCCTGTATCCTGCCACAACAGGTCGCAATTTCGAGTGGGTACTCA-TA-----------------------------------------TATTTTTAATTGTAAATTGTAGGTT-------ATACTTCTCTGGTT------TC---ATGTTTTTATATTGAGCATT---------------------------------------------------------------------------------ATCTT--------TA-----ACTATTATTTTCCGAATTAACAAATCGTGCACATAAATGTGTAAGTGTATAATTGCTTAATGATATGTAAATACTCAAAA-------------------------------------------------AAGTGACTGTATTG----------------------------------------ATCTAAA-----------------------------------------------------------------------------------------------------------------------------------TTAACT--TTCT---T------TTACTTTTTAATTCCAGTGAAATCCTCCGAGCTATCGATTCGCTTCATTTGACCCAAAC---GAAGAGTG-------------------------------------------------------------------------------
droBia1 scf7180000302188:1898828-1899250 - AAGCTGCGGCTCTCCATCCTATATCCCGCCACCACAGGACGCAATTTCGAGTGGGTATTA-GGAGATACAAGAAAATATTATAGTTTACTATTATATTCAAATTT---A------------------------------------------------------------------------C---------------------------------------------------------------------------------ATTCATATTTTTGGT-----ACCATAATCTTCCCTCTTAACAAATCGTGCATTTAAACGTTAAAGGAGAAAATGATTTAATGATCTTTAAGTACTTTAAACTATA----AAACGTGCTTAT------------AATGATGAAAGCAAAATAGAAACGCTTAAA----------------------------------------AACTAATGTAATT-GAAAA----------CTAAGGAGAACGCAAACCAATGTAATTATTGAAACTGAATATAGGGATCATATGATTGGCAATTTGTTT---------------------------AGTG----ATTAATAAGCATTCCC----T------TTTCTTTTCCATTTCAGTGAAATCCTTCGAGTGATCGACTCTCTCCACTTGACCCAAAC---GAAGAGCG-------------------------------------------------------------------------------
droTak1 scf7180000412794:49624-49880 + TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----TCTATAAATATTCATATTCACAAATCGTGCACATAAATGCTAAGAGAGAAAATTATTTAATGAATTATAAGCACTTAAATCGGTAT----ACCGTGCTTAT------------AATGATAAATGCAAAACAGCAACTATACTA----------------------------------------AACTAATGTAATTTGAATA----------TTAAAAAGA---------------------------------------GG----C-------TCAATTAAATTGG-------------------------------TATTTAATT--CTC----T------ATTTTTTCCCCTTTCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAATTGACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------
droEle1 scf7180000491273:280408-280480 + AATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTCCCCATTCCAGTGAAATCCTGCGGGTCATCGACTCACTGCAATTGACCCAAAC---AAAGAGCG-------------------------------------------------------------------------------
droRho1 scf7180000777055:27352-27807 - AAGCTACGCTTATCCATCCTGTATCCTGCTACCACAGGTCGCAATTTCGAGTGAGTATCT-TAC--------------------------------------G----TGTATGTTTAAGAATTGTATGTTCATCTTTATACTTCTAACAT-------TCAAAATGATTTTAAATTGAATTA---------------AAATAATTACCAAAACTTCATCGCTTTACATTTAATCATTTTAATATCAGACAAACTGTTGATAATAACCCC--------GA-----TCTGTAATTTTTCATATTAACAAATCGTGCATATAAACGTAGTAAAATATAATTATTTAATGCAGT----TTACTCAAAACTATATACG----ATGCTTAT------------AATGATTAAGGCTA--TGGAAGCGATTACA---A---------------ACTTACCATGAAATATAAATAAATTTATACACTTCAAAG---------------------------------------------------------ATCA------------------------------------------------------AATATTTAACT--ATCTTTTT------CTTGTGCCCCATTCCAGTGAAATTCTTCGAGTCATCGACTCACTTCATTTGACCCAAAC---AAAGAGCG-------------------------------------------------------------------------------
droFic1 scf7180000453924:850748-851089 - AAGCTACGCTTATCCATCCTATATCCAGCCACCACAGGACGCAACTTCGAGTGGGTATTA-TAA--------------------------------------TAT---T-------------------------------CAT-------------------------------------TCATCTATCCCATAGTAACCATTTACCAA----TC------------------------------------------------ATC------------------------TCTTTCGTGTTTACAAATCGTGCATGTAAATGTAGTAAGAGC------------------------------------------------TTTTAATAACAAAGTTAATGATGATTGCTT--TGTAAATGATATT--------------------ACTTTCCATGTAAAA-------------------TGTATA------------------C---------------------------------------TT----AAAAAGCATTTACCCGATAAATTGTGTTATTATTTGTCG---TATTATTTAATGTTGAACT--ACC----T------TTTTTTATCCATTCCAGTGAAATTCTTCGAGTGATCGACTCTTTGCATTTAACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------
droKik1 scf7180000302468:1242510-1242585 - AAGCTGCGCTTATCCATACTTTATCCAGCCACCACGGGACGCAATTTCGAGTGGGTTT-CG-TA-----------------------------------------TATTTA----------------------------AAAT-------------------------------------TT---------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:739772-740059 - AAGCTGCGCCTGTCGATCCTTTACCCGGCGACGACTGGACGAAACTTCGAGTAAGTACTC-TAG--------------------------------------GAT---AAC----------------------------TCTTCCACAGTTTGCTCTCC---ATGCCGTGAGCTTAAGCT-------------------------------------------------------------------------------------------------------------------------------------------TGGCCTTAAC------------------------TTGCTTAGATCTTTG-----T------------------------A--------------------GACTTG-----TAGGTACATCGGAAT---------------------------------GTTACATGCGAACCATATTTAAAGGC---------------------------------------CG----AAGTACCAATTACCG---------------------------ATTA----AGTGGTTAACTATACC--TTT------TGTTTGGATAATTGCAGTGAGATACTTCGCGTTATCGACTCGCTCCAGTTGACGCAAAC---AAAGAGCG-------------------------------------------------------------------------------
droBip1 scf7180000396554:1532133-1532356 + AAGCTGCGCCTGTCGATCCTTTACCCGGCGACCACTGGTAGGAACTTTGAGTAAGTATTA-TAA--------------------------------------TAT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTAAGCCCCTATCCCAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTCATATAA-------CCCCCATTTAATGGT---------------------------------------TG----AATCACCAATTATCC---------------------------AATT----AATTTTAAACTATACC-TTTT------CGTTTTGATAATTGCAGTGAAATACTTCGAGTTATAGACTCACTGAAGTTGACGCAAAC---GAAGAGCG-------------------------------------------------------------------------------
dp5 4_group4:4323284-4323357 + AATTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CATTTGTCCCACTTAAGTGAAATCCTACGCGTCATCGATTCGCTGCAGTTGACCCAGAC---GAAGAGCG-------------------------------------------------------------------------------
droPer2 scaffold_10:3365803-3365876 + AATTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CATTTGTCCCACTTAAGTGAAATCCTACGCGTCATCGATTCGCTGCAGTTGACCCAGAC---GAAGAGCG-------------------------------------------------------------------------------
droWil2 scf2_1100000004585:5889886-5889963 + ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-------------------------------------------------AGC----T------TAATTACTTCTTAATAGTGAAATTCTGCGTGTAATTGATTCGCTGCATTTGACCCAAAG---AAAGAGTG-------------------------------------------------------------------------------
droVir3 scaffold_12875:16258160-16258256 - TTTCTATGCCATTTGATTCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATACCCTTCCTTTTGCACAGCGAGATCTTGCGCACCATCGACTCGCTGCAGCTGACCGATCGCTTGAAGGTGG-------------------------------------------------------------------------------
droMoj3 scaffold_6496:7496950-7497193 + ----TGCGCCTGTCCATGTTCTATCCCATGTCAACGGGACGCAATGTTGAGTGAGTGGCG-TGG--------------------------------------AAT---GAT----------------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------CAG--------------------------------------------------------------------------------------------------AATTTAAGC--ATACTTATCTAATACCCTGTAATTTATTCAGTGAGATCTTGCGCACCATTGACTCGCTGCAGCTGACCGATCGCCTAAAGGTGGTTGCCACGCCCGCCAATTGGACTGTAAGTCCCTAACTCTTATATTCTCTGTATGGAATTATAAACTCATTTCATTATTC
droGri2 scaffold_15245:13097882-13097991 - AAGGTGCGCCTGACCATGTTCTATCCCATGTCCATGGGTCGCAATGTTGAGTGAGTAAAT-CTG--------------------------------------AT-TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----C-TGATTAATCT-------------------------------CATTAGCTGAAGCTGCAACAGCTCCTTAAC-----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTCGAGTGGGTACTCC-AT-----------------------------------------TATCTA----------------------------GCAT-------------------------------------TC---------------------------------------------------------------------------------ATCACTATCTATAAA-----GCTGTAATGCTCTTTAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGCCTAT------------TAAGATGAAAGTTAAATAGGAACGATTTCA--------------------------------------------------------------------------ACGT---------------------------------------CG----A-------TTAATCCGACAAA------------------TTA----------C--------------------------TTTATCCCCTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAGTTGACCCAAAC---GAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGCTTCAGTTGACCCAAAC---GAA....................................................................................2611.00100010000000000000
......CGCCTGTCCATCCTGTATCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........CTGTCCATCCTGTATCCTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................GATAATTATTTAATGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................................CTGAAAACTAAGTACTAACCT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAAATAGGAACGATTTC..............................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
droSec2
AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTCGAGTGGGTACTC-TAG--------------------------------------CAT---G------------------------------------------------------------------------C---------------------------------------------------------------------------------ATCACTATCTATAAA-----GCTGTAATGCTCTTTAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGAATAT------------TACGATGAAAGTTAAATAGGAACGATTTCA--------------------------------------------------------------------------ACGT---------------------------------------CG----A-------TAAATCGGACAAA------------------TTA----------C--------------------------TTTATCCCCTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTCCAGTTGACCCAAAC---GAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................TCCTGCCACCACTGGGCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----------C--------------------------TTTATCCCCTTGCAGTG..................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA--------------------------------------------------------------------------ACGT---------------------------------------CG----A-------TAAATCGG..................................................................................................................................................................................................................1911.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCGACTCGCTCCAGTTGT.................................................................................................2211.0010100
.......GCCTGTCCATCCTGTATCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
........................................................................................................T---G------------------------------------------------------------------------C---------------------------------------------------------------------------------ATCACTATCTATAAA-----GCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
AAGCTTCGCCTGTCCATCCTGTATCCTGCCACCACTGGGCGCAACTTTGAGTGGGTATTCC-AA-----------------------------------------TATCTA----------------------------GCAT-------------------------------------TC---------------------------------------------------------------------------------ATCATTATCTATAAAGTAATGCTGTAATGCACTTTAGCAAACAATCGTGCACTTAATCGCATTAGCAGATAATTATTTAATGAAGTATTATTGCTGAAAACTAAGTACTAACCTTGCATAT------------AATAATGGAAGTTAAATAGGAACGATTTCA--------------------------------------------------------------------------AGGT---------------------------------------CA----A-------TTAATCCGACAAA------------------TTA----------CATTTAACTA--------------------TATCCTTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTCCAGTTGACCCAAAC---AAAGAGTG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACTA--------------------TATCCTTTGCAGT...................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTAAGTACTAACCTTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTGAGTGGGTATTCC-AA-----------------------------------------TATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TCTA----------------------------GCAT-------------------------------------TC---------------------------------------------------------------------------------ATCATTATCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................ATTTAATGAAGTATTATTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CACTTTAGCAAACAATCGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CACCACTGGGCGCAACTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGGGCGCAACTTTGAGTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGACCCAAAC---AAAGAGTG-------------------------------------------------------------------------------2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................GTATTATTGCTGAAAACTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCGAGTGATCGACTCGC..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AACAATCGTGCACTTAATCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTA--------------------TATCCTTTGCAGTGA.................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTGCAGTGAAATC.............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCGAGTGATCGACTCGCTCCAGT....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAAATCCTTCGAGTGATC.................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................T------------AATAATGGAAGTTAAAA..........................................................................................................................................................................................................................................................................................................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................T------------AATAATGGAAGTTAAAC..........................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droEre2
AAGCTTCGCCTATCCATCCTTTATCCTGCCACCACTGGTCGCAACTTCGAGTGGGTAATCT-AA-----------------------------------------TATCAA----------------------------ACAC-------------------------------------TC---------------------------------------------------------------------------------ATCATTATCTATAAA-----TCTGTAGGGCTCTATAGCAAGCAATCGTGCACTTAATCGCATTAGCAGATAATTGCTTAATGAAGTATAAGTGCTGAAAACTAATCTTTAA------------------------C--------------------GACTTCGTTT-AATGTACATCATAAT---------------------------------TTTTCTA----------CCTCAACGA---------------------------------------CG----C-------TTAATCCGAGAAG------------------TTA----------CATTTCACTA---------------TTTTCTTTCCTTTGCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAGTTGACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................TATCCTGCCACCACTGGTCGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.....................TATCCTGCCACCACTGGTCGCAACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
droYak3
AAGCTTCGCCTATCCATCCTTTATCCTGCCACTACTGGGCGCAATTTCGAGTGGGTACCCA-TA-----------------------------------------TATCTA----------------------------ACA--------------------------------------TC---------------------------------------------------------------------------------ATTACTAACTATAAG-----TCTGTAATGCTCTGTAGCAAACAATCGTGCACTTAATTGCATTAGCAGATAATTGTTTAATGAAGT-TAAGTGGTGTAAACTAAACTTT------------------------AACGATGGATGTAAATTAGGATCCATTTTGTTT-AATGCATATCATTAG---------------------------------TTTTATA----------TCTAAACGA---------------------------------------CG----A-------TTAATCTGATAAG------------------TAT----------CATTTCAAT----------------CCCTCTCTTCTTTGCAGTGAAATCCTTCGGGTGATCGACTCGCTTCAGTTGACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGGTGATCGACTCGCTT........................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCGGGTGATCGACTCGCTTCAGTT...................................................................................................2711.00101000000000
droEug1
AAGCTTCGTCTTTCCATCCTGTATCCTGCCACAACAGGTCGCAATTTCGAGTGGGTACTCA-TA-----------------------------------------TATTTTTAATTGTAAATTGTAGGTT-------ATACTTCTCTGGTT------TC---ATGTTTTTATATTGAGCATT---------------------------------------------------------------------------------ATCTT--------TA-----ACTATTATTTTCCGAATTAACAAATCGTGCACATAAATGTGTAAGTGTATAATTGCTTAATGATATGTAAATACTCAAAA-------------------------------------------------AAGTGACTGTATTG----------------------------------------ATCTAAA-----------------------------------------------------------------------------------------------------------------------------------TTAACT--TTCT---T------TTACTTTTTAATTCCAGTGAAATCCTCCGAGCTATCGATTCGCTTCATTTGACCCAAAC---GAAGAGTG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGCTGCGGCTCTCCATCCTATATCCCGCCACCACAGGACGCAATTTCGAGTGGGTATTA-GGAGATACAAGAAAATATTATAGTTTACTATTATATTCAAATTT---A------------------------------------------------------------------------C---------------------------------------------------------------------------------ATTCATATTTTTGGT-----ACCATAATCTTCCCTCTTAACAAATCGTGCATTTAAACGTTAAAGGAGAAAATGATTTAATGATCTTTAAGTACTTTAAACTATA----AAACGTGCTTAT------------AATGATGAAAGCAAAATAGAAACGCTTAAA----------------------------------------AACTAATGTAATT-GAAAA----------CTAAGGAGAACGCAAACCAATGTAATTATTGAAACTGAATATAGGGATCATATGATTGGCAATTTGTTT---------------------------AGTG----ATTAATAAGCATTCCC----T------TTTCTTTTCCATTTCAGTGAAATCCTTCGAGTGATCGACTCTCTCCACTTGACCCAAAC---GAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----TCTATAAATATTCATATTCACAAATCGTGCACATAAATGCTAAGAGAGAAAATTATTTAATGAATTATAAGCACTTAAATCGGTAT----ACCGTGCTTAT------------AATGATAAATGCAAAACAGCAACTATACTA----------------------------------------AACTAATGTAATTTGAATA----------TTAAAAAGA---------------------------------------GG----C-------TCAATTAAATTGG-------------------------------TATTTAATT--CTC----T------ATTTTTTCCCCTTTCAGTGAAATCCTTCGAGTGATCGACTCGCTTCAATTGACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTCCCCATTCCAGTGAAATCCTGCGGGTCATCGACTCACTGCAATTGACCCAAAC---AAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAGCTACGCTTATCCATCCTGTATCCTGCTACCACAGGTCGCAATTTCGAGTGAGTATCT-TAC--------------------------------------G----TGTATGTTTAAGAATTGTATGTTCATCTTTATACTTCTAACAT-------TCAAAATGATTTTAAATTGAATTA---------------AAATAATTACCAAAACTTCATCGCTTTACATTTAATCATTTTAATATCAGACAAACTGTTGATAATAACCCC--------GA-----TCTGTAATTTTTCATATTAACAAATCGTGCATATAAACGTAGTAAAATATAATTATTTAATGCAGT----TTACTCAAAACTATATACG----ATGCTTAT------------AATGATTAAGGCTA--TGGAAGCGATTACA---A---------------ACTTACCATGAAATATAAATAAATTTATACACTTCAAAG---------------------------------------------------------ATCA------------------------------------------------------AATATTTAACT--ATCTTTTT------CTTGTGCCCCATTCCAGTGAAATTCTTCGAGTCATCGACTCACTTCATTTGACCCAAAC---AAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAGCTACGCTTATCCATCCTATATCCAGCCACCACAGGACGCAACTTCGAGTGGGTATTA-TAA--------------------------------------TAT---T-------------------------------CAT-------------------------------------TCATCTATCCCATAGTAACCATTTACCAA----TC------------------------------------------------ATC------------------------TCTTTCGTGTTTACAAATCGTGCATGTAAATGTAGTAAGAGC------------------------------------------------TTTTAATAACAAAGTTAATGATGATTGCTT--TGTAAATGATATT--------------------ACTTTCCATGTAAAA-------------------TGTATA------------------C---------------------------------------TT----AAAAAGCATTTACCCGATAAATTGTGTTATTATTTGTCG---TATTATTTAATGTTGAACT--ACC----T------TTTTTTATCCATTCCAGTGAAATTCTTCGAGTGATCGACTCTTTGCATTTAACCCAAAC---CAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGCTGCGCTTATCCATACTTTATCCAGCCACCACGGGACGCAATTTCGAGTGGGTTT-CG-TA-----------------------------------------TATTTA----------------------------AAAT-------------------------------------TT---------------------------------------------------------------------------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AAGCTGCGCCTGTCGATCCTTTACCCGGCGACGACTGGACGAAACTTCGAGTAAGTACTC-TAG--------------------------------------GAT---AAC----------------------------TCTTCCACAGTTTGCTCTCC---ATGCCGTGAGCTTAAGCT-------------------------------------------------------------------------------------------------------------------------------------------TGGCCTTAAC------------------------TTGCTTAGATCTTTG-----T------------------------A--------------------GACTTG-----TAGGTACATCGGAAT---------------------------------GTTACATGCGAACCATATTTAAAGGC---------------------------------------CG----AAGTACCAATTACCG---------------------------ATTA----AGTGGTTAACTATACC--TTT------TGTTTGGATAATTGCAGTGAGATACTTCGCGTTATCGACTCGCTCCAGTTGACGCAAAC---AAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGAAT---------------------------------GTTACATGCGAAC............................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................CTTCCACAGTTTGCTCTCC---AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCG---------------------------ATTA----AGTGGTTAACTAT...................................................................................................................................................................2111.001100000
...................................................................................................................................................AGTTTGCTCTCC---ATGCCGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
AAGCTGCGCCTGTCGATCCTTTACCCGGCGACCACTGGTAGGAACTTTGAGTAAGTATTA-TAA--------------------------------------TAT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTAAGCCCCTATCCCAAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTCATATAA-------CCCCCATTTAATGGT---------------------------------------TG----AATCACCAATTATCC---------------------------AATT----AATTTTAAACTATACC-TTTT------CGTTTTGATAATTGCAGTGAAATACTTCGAGTTATAGACTCACTGAAGTTGACGCAAAC---GAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AATTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CATTTGTCCCACTTAAGTGAAATCCTACGCGTCATCGATTCGCTGCAGTTGACCCAGAC---GAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTACGCGTCATCGAT..............................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTCCCACTTAAGTGA.................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGCGTCATCGATTCGCTGC.......................................................................................................2211.0010100000000
droPer2
AATTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------CATTTGTCCCACTTAAGTGAAATCCTACGCGTCATCGATTCGCTGCAGTTGACCCAGAC---GAAGAGCG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGATTCGCTGCAGTTGACCC..............................................................................................2312.002200000
droWil2
ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-------------------------------------------------AGC----T------TAATTACTTCTTAATAGTGAAATTCTGCGTGTAATTGATTCGCTGCATTTGACCCAAAG---AAAGAGTG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCATTTGACCCAAAG---AAAGA..................................................................................2411.00100100
droVir3
TTTCTATGCCATTTGATTCATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATACCCTTCCTTTTGCACAGCGAGATCTTGCGCACCATCGACTCGCTGCAGCTGACCGATCGCTTGAAGGTGG-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGCGCACCATCGACT.............................................................................................................1912.002000000000000000001000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGCGCACCATCGACT.............................................................................................................2012.002000000000000000002000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGACCGATCGCTTGAAGGT.................................................................................2112.002000000010000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTCGCTGCAGCTGACCGAT............................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTCGCTGCAGCTGACCGATC...........................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTCGCTGCAGCTGA.................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGATCGCTTGAAGGTG................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGCGCACCATCGACTCGCT.........................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGATCGCTTGAAGGT.................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCATCGACTCGCTGC.......................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGACCGATCGCTTGAAGGT.................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGACCGATCGCTTGAAGGT.................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTCGCTGCAGCTGACC...............................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
...................ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATACCCTTCCTTTTGCACAG....................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
----TGCGCCTGTCCATGTTCTATCCCATGTCAACGGGACGCAATGTTGAGTGAGTGGCG-TGG--------------------------------------AAT---GAT----------------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------CAG--------------------------------------------------------------------------------------------------AATTTAAGC--ATACTTATCTAATACCCTGTAATTTATTCAGTGAGATCTTGCGCACCATTGACTCGCTGCAGCTGACCGATCGCCTAAAGGTGGTTGCCACGCCCGCCAATTGGACTGTAAGTCCCTAACTCTTATATTCTCTGTATGGAATTATAAACTCATTTCATTATTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCCTGTAATTTATTC......................................................................................................................................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCTGCAGCTGACCGATCGC.........................................................................................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTAAAGGTGGTTGCCAC........................................................................1911.001000010
...........................................................G-TGG--------------------------------------AAT---GAT----------------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------CAG--------------------------------------------------------------------------------------------------AATTTAAGC--...................................................................................................................................................................2611.001000010
droGri2
AAGGTGCGCCTGACCATGTTCTATCCCATGTCCATGGGTCGCAATGTTGAGTGAGTAAAT-CTG--------------------------------------AT-TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----C-TGATTAATCT-------------------------------CATTAGCTGAAGCTGCAACAGCTCCTTAAC-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................GTGAGTAAAT-CTG--------------------------------------AT-TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----C-TG........................................................................................................................................................2220.50101

Generated: 05/19/2015 at 12:54 AM