ID:

dsi_27196

 Coordinate:

2l:19809208-19809485 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.1 -4.9 -4.8 -4.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGTAAAGCCCCCAATGCCAGTTCCCCAATGAATTCCCAATCCATTCGCACGGCCAGTACCCAAGTCAACCGCAATCCCGACAACAATCCCTCCTCATCAAAATCCCCATTTGCCTCTGGCAGAATGTGAAATATTGATGCAAAGGCTTTCCCTTCTTCCGACTTCATTTCCTTTGCCATGATTCCTCATTTTTTGTACCAAATTGTTGTTTTTCTTTTAAATAAAAATTATTAGTTTACTGTACGTTCTTGTTCTGTACTTTCCGGACTCATCAGGCCAGCGATCGACAATTGGGCCCACCGCGCATGTGCGAGCCTTCCCCGCG
***************************************************************************************************************************************************************************************************************************************************..........................................((......((((...........))))........))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................................................................................................TTTTGTACCAAATTGTTGT.................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................TGTTCTGTACTTTCCGGACT........................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TGTACTTTCCGGACTCATCA................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................CATGTGCGAGCCTTCCCC... 18 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................TCCATTCGCACGGCCAGTACCCAA...................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................AACGTGAAATATCGAGGCAAAG..................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
...GCGCCATGATCTCGGTGTTCA.................................................................................................................................................................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................TACTGTCTGTTCTTGTTGTGT.................................................................... 21 3 8 0.13 1 0 0 0 0 1 0 0
.....................................................................................................................CTAACCGCAATCCCGACGA.................................................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................GTCTCTACTTTCGGGACTC....................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0
...................................CCGCCGCTGAAGACG........................................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................TGTTGTTGTTATTTTAAAAAAA.................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

GGGTGCGGTACTAGAACCTCAAGTAGTCCAGTGCCGGCGGCGACTTCTTCCACACATTTCGGGGGTTACGGTCAAGGGGTTACTTAAGGGTTAGGTAAGCGTGCCGGTCATGGGTTCAGTTGGCGTTAGGGCTGTTGTTAGGGAGGAGTAGTTTTAGGGGTAAACGGAGACCGTCTTACACTTTATAACTACGTTTCCGAAAGGGAAGAAGGCTGAAGTAAAGGAAACGGTACTAAGGAGTAAAAAACATGGTTTAACAACAAAAAGAAAATTTATTTTTAATAATCAAATGACATGCAAGAACAAGACATGAAAGGCCTGAGTAGTCCGGTCGCTAGCTGTTAACCCGGGTGGCGCGTACACGCTCGGAAGGGGCGC
********************************************************..........................................((......((((...........))))........))*************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 GSM343915
embryo
 M025
embryo
...........................................................................................................................................................................................................GGAACAAGGCTGAAGT............................................................................................................................................................... 16 1 2 2.00 4 0 2 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................AGGGAAGAAGGCTGAAGTAAA............................................................................................................................................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................AGGGTGCCGGGCATGGGTTT..................................................................................................................................................................................................................................................................... 20 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGGAACAAGGCTGAAGT............................................................................................................................................................... 18 2 4 1.50 6 1 3 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................GGAACAAGGCTGAAG................................................................................................................................................................ 15 1 6 1.33 8 2 1 2 0 2 0 1 0 0 0 0
.........................................................................................................................................................................................................ATGGAACAAGGCTGAAGTG.............................................................................................................................................................. 19 3 12 1.25 15 4 4 1 0 1 3 0 0 2 0 0
.......................................................................................................................................................................AGTCCGTCTTACACGTTAT................................................................................................................................................................................................ 19 2 5 1.20 6 1 1 4 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GAACAAGGCTGAAGT............................................................................................................................................................... 15 1 7 0.71 5 1 4 0 0 0 0 0 0 0 0 0
......................................................CATTTCTGGGGTTAAGGTC................................................................................................................................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................TGACGTTAGGCCTGATGTTAG............................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGAACAAGGCTGAAGTG.............................................................................................................................................................. 18 3 20 0.40 8 2 3 1 0 0 0 0 2 0 0 0
...........................................................................................................................................................................................................GGAACAAGGCTGAAGTG.............................................................................................................................................................. 17 2 10 0.40 4 1 1 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AATGGAACAAGGCTGAAGT............................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................AGTTAGGGAGGAGGAGATTT............................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................TACCAGGGAGTAAAACACAT................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................GATGGAACAAGGCTGAAGT............................................................................................................................................................... 19 3 11 0.27 3 1 0 2 0 0 0 0 0 0 0 0
...................................................................................TTAAGGGTTAGGTATGCCGG................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................AGGGTGCCGGGCATGGG........................................................................................................................................................................................................................................................................ 17 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.............GAATGTCAAGTAGTCCAGT.......................................................................................................................................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................TGGGTTCAGATGGTGTTATG........................................................................................................................................................................................................................................................ 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGAACAAGGCTGAAGT............................................................................................................................................................... 17 2 13 0.23 3 1 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGGAACAATGCTGAAGT............................................................................................................................................................... 18 3 20 0.20 4 3 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................GAAAGGGGAGAAGCCGGAAG................................................................................................................................................................ 20 3 19 0.16 3 0 0 0 0 0 3 0 0 0 0 0
............AAAATGTCAAGTAGTCCAGT.......................................................................................................................................................................................................................................................................................................................................................... 20 3 15 0.13 2 1 0 0 0 0 0 0 0 0 0 1
......................................................................................AGAGTTAGGTAAGCG..................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................GGCGGAGTGGTTTGAGGGGT......................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................AGTCCGACTTACACGTTAT................................................................................................................................................................................................ 19 3 20 0.10 2 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................GAAGGCTGAAGCAAA............................................................................................................................................................ 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TTCGTTAAGGGTTAGGTA......................................................................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AAGGAATTGGTACTAAG............................................................................................................................................. 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..................TCAAGTAGTCCAGTTCT....................................................................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................AGGGAACAATGCTGAAGTG.............................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................TTGAGAGTTAGGTAAGC...................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................GGGTTACCTAATCGTTAGGT.......................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................AGTCCAGTGCTGGGGCCG................................................................................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................GAGAGTTAGGTAAGCG..................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GAAAGGGGAGAAGCCGGAA................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTTTAGGGGTAGAACGAGAC............................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................CCGTCATGGATTCAGTTA................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:19809158-19809535 + dsi_27196 CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------GC---CAGTTCCCCAATGAATTCCCAATCCAT---TCGCA----------------CGGCCAGTACCCAAGT------CAACCGCAATCCCGACAACAATC---------C-----------------CTCCTCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCTCT-----------GGCAGAATGTGAAA--------TATTGATGC-AAAGGCTTTC-CCT-TCTTCCGACTTCATTTC--CTTTGCCA-TGATT-----------------------------------------------------------------------------CCT-----------CA-TTT----TTTGTACC-------------AAATTGTTGT-TTTTCTTTTAAATAAAAATTATTAGTTT----------ACTGT------------A--------------------------------------------CGTTCTTG------------------T--------------------------------------------------TCTG---------------TACTTT-C---CGGACTC---------------ATCAGGCCAGCGATCGACAATTGGGCCCACC---GCGCATGTGCGAGCCTTCCCCGCG
droSec2 scaffold_18:233290-233668 + CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------GC---CAGTTCCCCAATGAATTCCCAATCCAT---TCGCA----------------CGGCCAGTACCCAAGT------CAACCGCAATCCCGACAACAATC---------C-----------------CTCCTCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCTCT-----------GGCAGAATGTGAAA--------TATTGATGC-AAAGGCTTTC-CCT-TCTTCCGACTTCATTTG--ATTGGCCG-TGATT-----------------------------------------------------------------------------CCT-----------CA-TTT----TTTCTACC-------------AAATTGTTGT-TTTTCTTTGAAATAAAAATTATTAGTTT----------ACTGT------------A--------------------------------------------CGTTCTTG------------------TT-------------------------------------------------TCTG---------------TACTTT-C---CGGACTC---------------ATCAGGCCAGCGATCGCCAATTGGGCCCACC---GCGCATGTGCGAGCCTTCTCCGCG
dm3 chr2L:20339644-20340029 + CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------GC---AAGTTCCCCAACGAATTCCCAATCCAC---TCGCA----------------TGGCCAGTACCCAAAT------CAACCGCAATCCCAACTGCAATC---------C-----------------CTCCTCATCAAAAT------------------------------------------CCC----------------------------------------CATTTCACTTT-----------GGCAAAGTGTGAAA--------TATTAAACT-ACAGGTTTTC-CCT-TTTTCCGACTTCATTTC--ATTCGCCG-TGATT-----------------------------------------------------------------------------CCT-----------AATTTT----TTTGTACC-------------AAATTGTTGT-TTTTCTTCGAAATAAAAATTATTAGTTT----------ACTGT------------A--------------------------------------------CGTTCTTGTTTC------------TGTT-------------------------------------------------TCTG---------------TACTTT-C---CGGACCC---------------ATCAGGCCAGCGATCGCCAATTGGGCCCGCC---GCGCATGTGCGAGCCTTCTCCGCG
droEre2 scaffold_4845:4084294-4084680 - CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAGT------------------------CC---CAGTGCCCCAACCCATTCCCAAATCAT---CCGCA----------------CGGCCAGTACCCAAAT------CAAAA------------GCAATT---------C-----------------CCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTCGCCGCT-----------TGCAGAGTGTGATG-----AAGTATTGATCT-TGAGGCTTTC-CC----TTCCAACTTCATTTC--ATTGGCCT-TGATT-----------------------------------------------------------------------------CCCCTCCCCACTGACA-TTT----TTTGTAGCAAATG---C-ATCAAATTGTTGT-TCTCCTTTGAAATAAAAATTATTAGTTC----------ACTGT------------C--------------------------------------------CGTTTTCA------------------TT-------------------------------------------------TCTG---------------TATTTC-C---CGGACCC---------------ACCAGGCCAGCGATCGCCAACTGGGCCCGCC---GCGCATGTGCGAGCCTTCTCCGCG
droYak3 2R:6711570-6711966 + CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAAAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAGT------------------------CC---CAGTGCGCCAGGGAATTCCCAATCCAA---CCGCA----------------CGGCCAGTACCCAATC------CAACCGCAATCCCAACTGCAATC---------C-----------------CTCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCACT-----------TGCAGACTGTGAAATATTGAAATATTGATCT-TGAGGCTTTC-CCA-CCTTTCGACTTCATTTC-ATTTTGCCG-TGATT-----------------------------------------------------------------------------CCC-----------CA-TTT----TTTGTACCAAATG---C-ATCAAATTGTTGT-TCTCCTTTGAAATAAAAATTATTAGTTC----------ACTGT------------C--------------------------------------------CGTTTTTA------------------TT-------------------------------------------------TTTG---------------TATTTT-C---CGGACCC---------------ACCAGGCCAGCGATCGCCAATTGGGCCCGCC---GCGCATGTGTGAACCTTCTCCGCG
droEug1 scf7180000409767:947154-947563 - CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AGCG---------CCC------------------------------------------------------CCAAT------------------------CC---CATTGCCTCAACAAATTCCAAATCCAT---CCGCA----------------TCGCAAGTCCCAAAAG------CAACCTCAATTCCCACTGCAATACCACTG---C-----------------CCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT----------TTGCGGAGTGTGAAA--------TATTGATCT-TGTGGCTCTT-ATT-CCTGACCATTTCATTTC-TGTTTGTCT-TGATCTCATGACCTT-----------------------------------------------------------------TGA-T-----------TG-TTT----TTTGTACCAAAAA---AAAGCAAATTACTTT-TCGCTCTTCGAATAAAAATTATAAGTTC----------ACTAT------------T--------------------------------------------TAATATTG------------------TATC-----------------------------------------------TTTG---------------TGATTT-C---CGGATCC---------------TTCAGGCCAGCGATCGCCAATTGGGGCCACC---CCGCATGTGCGAACCTTCTCCGCG
droBia1 scf7180000302422:8025175-8025580 - CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCGAT------------CCCAATTCCAATCC---AACTGCCACAACAAATTCCAAATCCAT---GCGCA----------------CCGCCAGTCGCAAAGG------CGCCCTCAATTCCAACTGCAGTC---------C-----------------CCCATCACCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCAGAGTGTGAAA--------TATTGATCC-GGTGGCTTTC-CTT-CCCGCCGATTCCATTTC--ATTTGTCC-TGATCACTTGA-------------------------------------------------------------------------------------CC-TTT----TTTGTACCCAAAGAAAA-ATCCAATTGTTGT-TCGCCTTTCGAATAAAAATTATTAGTTT----------ACTAT------------A--------------------------------------------CGTTTCTG------------------TA-------------------------------------------------TCTG---------------TACTTC-T---CGGATCC---------------ACCAGGCCAGCGAGCGCCAACTGGGGCCGCC---GCGCATCTGTGAGCCTTCTCCGCG
droTak1 scf7180000415115:228486-228918 - CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCGAT-----TCCCATTC-CAATTGCAATCC---CACTGCCACAACCAATTCCCAATCCAT---CCGCA----------------CCGCCAGTCCAAAAGCCAAATGCAACCTCAATTCGAACTGCAGTCACAGTC---A-----------------CCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCAGAGTGTGAAA--------TATTGATCT-TGTGGCTTTC-CTT-CCTGTCGATTCCATTTCATGTTTGTCTGTAATCGCATAACC----------------------------------------------------------------------CT------------C-ATT----TTTGTACCAAAAA---A-ATTCAATTGTTGT-TCTCCATTCAAATAAAAATTATTAGTTT----------ACTAT------------A--------------------------------------------CTTTTCTGTATC------------TGTA-------------------------------------------------TCTG---------------TACTTT-T---TGGAACC---------------ACCAGGCCAGCGAACGTCAGCTGGGGCCACC---GCGCATCTGCGAGCCTTCTCCGCG
droEle1 scf7180000491186:298369-298769 + CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAGA---------CCC------------------------------------------------------TCAAT------------------------CC---CAGTGCCACGGCAAATTCCAGATCCAT---CTGCA----------------CCGCCAGTTCCGAAAG------CAACCTCAATTCCAACTGCAGTC---------C-----------------CCCACCATAAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCACAGTGTGAAA--------TATTGATCA-TGTGGCTTTC-CTT-CCTGTCGATTCAATTTC--ATTTGTCT-TGATCTCGTGACCAT-----------------------------------------------------------------TTCTT-----------CT-TTT----TTTGTACCAAAAG---A-ATCAAATTGTTTT-TCTTACTCGAAATAAAAATTATTGGTTC----------ACCTT------------T--------------------------------------------CGTTTCTG------------------TA-------------------------------------------------TCTG---------------TATTTTCC---CGGATCC---------------AACAGGCAAGTGAACGCCAATTGGGACCGCC---GCGCATGTGCGAACCGTCGCCGCG
droRho1 scf7180000774359:17448-17850 - CCCACGCCATGATCTTGGAGTTCATTAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------CC---CACTGCCACAACGAATTCCAAATTCAT---CCGCA----------------CCGCCAGTGCCGAAAG------CAACCTCAATTCCAACTGCAATC---------C-----------------CCCATCATCGAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCAGAGTGTGAAA--------TATTGATCT-CGTGGCTTTC-CTT-CCTGTCGCTTCCATTTT--GTTTGTCT-TGATCTCTTCACCAT-----------------------------------------------------------------T---------------TT-CTT----TTTGTACCGAAAG---A-ATCAAATTGTTTT-TCTCATTTAAAATAAAAATTATAAGTTC----------ACTAT------------C--------------------------------------------CGTTTCTGTTTC------------TGCA-------------------------------------------------TCTG---------------TATTTTCC---CGGAACC---------------AACAGGCCAGTGAACGCCAATTGGGGCCGCC---GCGCATGTGCGAACCTTCGCCGCG
droFic1 scf7180000454082:732493-732890 + CCCACGCGATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTAAAGAAGGTGTGTAGTAGA-------GCCC------------------------------------------------------CCAAT------------------------CC---CAGTGCCACAGCCAATTCCAAATCCAT---CCGCA----------------TCGCCAGTCCCAAAAT------CAACCTCAATTCCAACTGCAATC---------G-----------------GCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGTAGAGTGTGAAA--------TATTGATCT-TGTGGCTTTC--TT-CCTGCCGATTCCATTTC--ATTTGTCT-TGATCTCTTA-C---A--------------------------------------------------------------------C-----------TG-TTT----TTTGTACCGCATG---A-ATCAAATTGTTTTTTCTCCGTTCAAATAAAAATTGTAAGTTT----------ACTAT------------C--------------------------------------------CGTTTTC-----------------TTTA-------------------------------------------------TCTG---------------TGCTTTTT---CGGATCC---------------ATCAGGCCAGCGATCGCCAGTTGGGACCGCC---GCGGATGTGCGAACCTTCGCCGCG
droKik1 scf7180000302389:270410-270767 - CCCATGCCATGATCTTGGAGTTCATTAGGTCACGACCGCCGCTCAAGAAGGTGTGT-AAAG---------CTC------------------------------------------------------CCAAA------------CCCCCT------GC---TAAACCAACAACAAATTCCAAGTCAAA---GTATA----------------TTCTCAATA------T------GAATCTCAATTTGAAGTCCAAT-----------------------------TCAATATCAAAAT------------------------------------------CCC----------------------------------------CACTTGGCGCT-----------TGCAGTGTGTGAAA--------TTTTAAAC--------------------GTTGATTTAATTTC--CCTTGACT-TGCCTTC------------------------------------------------------------------------------------------------------------------------------------TTGCTTTCAAATAAAAATTGTTAGTTTTTAATAGAACACTGT------------C--------------------------------------------TAACCTTG------------------AGTG----------------------------------------------TTT-----------------TGTTTT-T---CGAATTT--GTATTTAAATTTTGACAGGCCTCGGAACGGCAATTAGGACCGCC---GCGCATGTGCACACCCTCGCCCCG
droAna3 scaffold_12916:7517193-7517631 - CCCATGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCACTCAGAAAGGTGTGT-ACGACCACCAAAGCCACCACC---------------------------------------------------AATCAGAACCCCATTCCCAATCCCAATCC---CACTGCCACATCAAATTCAAAATCAAGTAACTGCAACCAGTCAAGT---AT-------CATCCAAAT------CAAAATCAAAACCAACTGCAAAC---------C-----------------AAATCAATCAAAAT------------------------------------------CTC----------------------------------------CATATGCCGCT-----------TGCAGAGTGTGAAA--------TTTTTACGACTTCGACTTTC-ATT-C--GACGATTCCATTTG--GTTTGTCT-TGACCTCGCG----TTA-------------------------------------------------------------------------------TT-TTT----TTTGTACCGAATC---C-GTAAAATTGTTTC-T-TGTTTTCAAATAAAAATTACTAGTTTCTCTTGCAAAAATCTCAAAAAAAATGTA--------------------------------------------TGTTTTTC---------------------------------------------------------------------------------------------------------T---------------TAAAGGCCTCTGAGCGGCAGTTAGGACCGCC---TCGTATGTGCACACCCTCGCCCCG
droBip1 scf7180000396554:133717-134149 - CCCATGCCATGATCTTGGAGTTCATCAGGTCGCGGCCTCCGCTCAGGAAGGTGTGT-ACCAC---TAAAGCCA------------------------------------------------------CCAATCAGAACCCCATTCCCAATCCCAATCC---CACTGCCACATCATATTCAAAATCAAGTAACTGCAACCAGTCAAGTACTAT-------CGTCCAAAT------CACAATCAAGACCAACTGCCAGC---------CACGG--------------AATCCATCAAAAT------------------------------------------CCC----------------------------------------CCTATGCCGCT-----------TGCAGAGCGTGAAT--------TTTTTACCC-AGCGACTTTC-CTT-C--GACGAACC-CTATG--ATTTGACT-TGACCTCACG----TTA--------------------------------------------------------------------------------T-TTT----TTTGTAACGAATC---C-ATCAAATTGTTTC-T-TGTTTTGAAATAAAAATTACTAGTTTCACTTGCAAAGATCT-AAACAAAAT-TA--------------------------------------------TGTTTTC----------------------------------------------------------------------------------------------------------T---------------TAAAGGCTTCTGAGCGGCAGTTAGGACCGCC---GCGGATGTGCGAACCCTCGCCCCG
dp5 4_group4:2583881-2584224 + CCCATGCCATGATCTTGGAGTTCATTAGGTCACGGCCGCCATTGAAGAAGGTGTGT-AGTG---------CCC------------------------------------------------------CCAAT------------------------CCAACCACAACCACAACCATTTCCAGTCCCAA---GTGAA----------------------------------------------------------------------------------------------------CC------------------------------------------CCC----------------------------------------CCTCTGG-GCT----------TTCTGGCGGGT--------------------------TT----AT--AT--T----------------------T-TTACTTCACT----TTC--------------------------------------------------------------------------------T-TTA----TGGAGGAAGCATC---G-CTGCATATATTTT-G-TGGCTTCCAATAAAATTTAACAGTTCCATTTTCGAAG----CAAAACTAATTTTCGTTGCCATATTTTTTCTTTTCTTGTTCTATTTCCCTT------------------------------------------------------------------------------------CCC---------------CACCTT-C---ATCGTCC---------------ACCAGGCCTCCGAACGGCAACTGGGCCCGCC---CCGGATGTGCACGCCCACGCCCAG
droPer2 scaffold_10:1593355-1593697 + CTCATGCCATGATCTTGGAGTTCATTAGGTCACGGCCGCCATTGAAGAAGGTGTGT-AGTG---------CCC------------------------------------------------------CCAAT------------------------CCAACCACAACCACAACCATTTCCAGTCCCAA---GTGAA-----------------------------------------------------------------------------------------------------C------------------------------------------CCC----------------------------------------CCTCTGG-GCT----------TTCTGGCGGGT--------------------------TT----AC--AT--T----------------------T-TCACTTCACT----TTC--------------------------------------------------------------------------------T-TTA----TGGAGGAAGCATC---G-CTGCATATATTTT-G-TGGCTTCCAATAAAATTTAACAGTTCCATTTTCGAAG----CAAAACTAATTTTCGTTGCCATATTTTTTCTTTTCTTGTTCTATTTCCCTT------------------------------------------------------------------------------------CCC---------------CACCTT-C---ATCGTCC---------------ACCAGGCCTCCGAACGGCAACTGGGCCCGCC---CCGGATGTGCACGCCCACGCCCAG
droWil2 scf2_1100000004577:1974558-1975052 + dwi_1574 CCCATGCCATGATATTGGAGTTCATCAGGTCACGGCCGCCATTGAAGAAGGTGGGT-AGCAGCAGCATAAGCAGCAGCAGCAACGGCAATGGCAGTAAAGTCGAAACGCCGACAACTACTACTGGCCCCAAT------------------------CT-----------------A-ACCAAATCCAA---AGGCA----------------TAACCGCAATCCAAAT------GAATCCAAGTCCCAATAACAA----------------------------------------AATCGAGTATCCAATTTAACTTTCCCTTCTTCATCTTCCCTCCCACTCACTCTTCCACTCTTTGTCACACTCACACACCATCTACCTTACTCTGTCGCTCTTCACATCTCTGCTGTGTGTT----------------------------------------------------------CGTCA-AGAAAATTTAA---T--TTTGTTTTAATAAAAATTGAAATTGTTGTCTGTAACTCATTTTTGCATTACAAATTGTTGTTG-------------------------------------------------------AT-TTACCT---------------------------------TTGT------------T--------------------------------------------TG---------------------------------------------------------------------------TTTG---------------TTTTTT-TGTTTGGAAAATAATATTT--ATATATATAGGCCTCGGAGCGTCAATTGGGGCCGCCATTGTTGAAGTGCATCCCATCGCCGAG
droVir3 scaffold_12963:11849133-11849516 - dvi_11414 CCCACGCGATGATCTTGGAGTTCATTAGGTCACGGCCGCCATTAAAGAAGGTGTGT-GTTGC-------GTTC------------------------------------------------------CCTAT-----------GCCCATT------TC---GAATAGCCAAACAAATGCTTAATATGA---CTGTC----------------CAAT----GTTCCAAT------GTTCA---------ACTA--GTTACATATATGCACTGTCT----------CC---------TAT------------------------------------------CGC----------------------------------------GCTCTTTCGCT-----------TTCAATTTGTGAAT--------TTTTGTGTT-A---TT----AT--GC-----------ATATACTATATGTATATATACATATATAT----------------------------------------------------------------------AT------------A-TAT------TTTGCTAAAAT---A-AACCCATTCGTTT-ACTCAATTCAATTAA-------------------------------------------------------------------------------------------------TGGCATATGGA-------------------------------------------TTTTCATTAATGTTTACAACAAATGCTCCTCATTGT-T---TTC--TT---------------TAAAGGCCTCGGAACGCCAACTGGGCCCACC---ATTGAAATGCACGCCCTCGCCCCG
droMoj3 scaffold_6500:20549146-20549559 - CGCATGCGATGATCTTGGAGTTCATCCGGTCACGGCCGCCATTAAAGAAGGTGTGT-GTTGC-------GTTC------------------------------------------------------CCAAT-----TTCCA------TA------GC---AAATACTTCAGCAAATGCCTAATGGAG---TCGTT----------------CAAGACCATGCAAAAT------CTAT------------TGATATT---------TATTGTCTCTTTCAAATCCACCTC-----TCT------------------------------------------CTC----------------------------------------ACTCTCACTCT-----------ATCAAAATGTGAAC--------AATTTTTGC-TGTTGTAT------GTATGAAGATGTTAATAT--ATAT----------ATAT----------------------------------------------------------------------------------------A-TATTTTTTATAAAATAAATA---C-ATCGG----------------------------------------------------------------------------------------------------CTTGCTCACTTTTAACATAC-TTGCATTTGAGT-----AATAAATGTAAAAACTATTATATATAGCAACAATTAATTATTATTAATTATG---------------AATTGC-T---CTAATT-----------------CAAGGCCTCGGAACGCCAGCTAGGTCCCCC---TCTGAAGTGCACGCCCTCACCCCG
droGri2 scaffold_15126:5402227-5402462 - CCCATGCGATGATCTTGGAGTTCATCAGGTCACGGCCGCCATTAAAGAAGGTGTGT-GTTGC-------GTCC------------------------------------------------------CCAAT-----TCCCATACCCACT------AC---AGAAACCAAAACGAATACCCA------------------------------------------------------------------AC----------------------------------------------AT------------------------------------------CTC----------------------------------------TATT----------------------GACT-----------------------------------------------------ATT--ATTTACCA-TTATT-----------------------------------------------------------------------------TAT--------TACTA-TTT----TTTATTACAAA-----------------------------------------------------------TATTT-ATT--ACTT-TT--------------------------------------------CTTTTGT----------------------------------------------------------------------------------------------------------G---------------TTCAGGCCTCGGAACGTCAGTTGGGCCCACC---GCTCAAGTGTACGCCTTCACCCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------GC---CAGTTCCCCAATGAATTCCCAATCCAT---TCGCA----------------CGGCCAGTACCCAAGT------CAACCGCAATCCCGACAACAATC---------C-----------------CTCCTCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCTCT-----------GGCAGAATGTGAAA--------TATTGATGC-AAAGGCTTTC-CCT-TCTTCCGACTTCATTTC--CTTTGCCA-TGATT-----------------------------------------------------------------------------CCT-----------CA-TTT----TTTGTACC-------------AAATTGTTGT-TTTTCTTTTAAATAAAAATTATTAGTTT----------ACTGT------------A--------------------------------------------CGTTCTTG------------------T--------------------------------------------------TCTG---------------TACTTT-C---CGGACTC---------------ATCAGGCCAGCGATCGACAATTGGGCCCACC---GCGCATGTGCGAGCCTTCCCCGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TTTGTACC-------------AAATTGTTGT-...............................................................................................................................................................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------T--------------------------------------------------TCTG---------------TACTTT-C---CGGACT..........................................................................2011.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------TACTTT-C---CGGACTC---------------ATCA......................................................2011.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGCGAGCCTTCCCC...1811.00100000100000000000
.......................................................................................................................................................................................TCCAT---TCGCA----------------CGGCCAGTACCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000000000
droSec2
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------GC---CAGTTCCCCAATGAATTCCCAATCCAT---TCGCA----------------CGGCCAGTACCCAAGT------CAACCGCAATCCCGACAACAATC---------C-----------------CTCCTCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCTCT-----------GGCAGAATGTGAAA--------TATTGATGC-AAAGGCTTTC-CCT-TCTTCCGACTTCATTTG--ATTGGCCG-TGATT-----------------------------------------------------------------------------CCT-----------CA-TTT----TTTCTACC-------------AAATTGTTGT-TTTTCTTTGAAATAAAAATTATTAGTTT----------ACTGT------------A--------------------------------------------CGTTCTTG------------------TT-------------------------------------------------TCTG---------------TACTTT-C---CGGACTC---------------ATCAGGCCAGCGATCGCCAATTGGGCCCACC---GCGCATGTGCGAGCCTTCTCCGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------GC---AAGTTCCCCAACGAATTCCCAATCCAC---TCGCA----------------TGGCCAGTACCCAAAT------CAACCGCAATCCCAACTGCAATC---------C-----------------CTCCTCATCAAAAT------------------------------------------CCC----------------------------------------CATTTCACTTT-----------GGCAAAGTGTGAAA--------TATTAAACT-ACAGGTTTTC-CCT-TTTTCCGACTTCATTTC--ATTCGCCG-TGATT-----------------------------------------------------------------------------CCT-----------AATTTT----TTTGTACC-------------AAATTGTTGT-TTTTCTTCGAAATAAAAATTATTAGTTT----------ACTGT------------A--------------------------------------------CGTTCTTGTTTC------------TGTT-------------------------------------------------TCTG---------------TACTTT-C---CGGACCC---------------ATCAGGCCAGCGATCGCCAATTGGGCCCGCC---GCGCATGTGCGAGCCTTCTCCGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................ATCAGGTCACGGCCGCCGCTGAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACGCCATGATCTTGGAGTTCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CACGCCATGATCTTGGAGTTCATCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................TTCATCAGGTCACGGCCGCCGCTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTCCGACTTCATTTC--ATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATCAGGTCACGGCCGCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCTTGGAGTTCATCAGGTCACGGCCGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGAGCCTTCTCCGCG2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTT-C---CGGACCC---------------ATCA......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCAGGTCACGGCCGCCGCTGAAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCGCCAATTGGGCC...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CATGATCTTGGAGTTCATCAGGTCACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-ACAGGTTTTC-CCT-TTTTCCGACTTCATTTC--A.................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCAGGTCACGGCCGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------------------------------------TCTG---------------TACTTT-C---CGGACCC---------------ATCA......................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCGATCGCCAATTGGGCCCG.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCCCGCC---GCGCAT..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATCGCCAATTGGGCCCG.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTCCCAATCCAC---TCGCA----------------TGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCTTGGAGTTCATCAGGTCACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGATCGCCAATTGGGCCCGCC---........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGGCCGCCGCTGAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAGCGATCGCCAATTGG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT----TTTGTACC-------------AAAGC.....................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAGT------------------------CC---CAGTGCCCCAACCCATTCCCAAATCAT---CCGCA----------------CGGCCAGTACCCAAAT------CAAAA------------GCAATT---------C-----------------CCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTCGCCGCT-----------TGCAGAGTGTGATG-----AAGTATTGATCT-TGAGGCTTTC-CC----TTCCAACTTCATTTC--ATTGGCCT-TGATT-----------------------------------------------------------------------------CCCCTCCCCACTGACA-TTT----TTTGTAGCAAATG---C-ATCAAATTGTTGT-TCTCCTTTGAAATAAAAATTATTAGTTC----------ACTGT------------C--------------------------------------------CGTTTTCA------------------TT-------------------------------------------------TCTG---------------TATTTC-C---CGGACCC---------------ACCAGGCCAGCGATCGCCAACTGGGCCCGCC---GCGCATGTGCGAGCCTTCTCCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................TCACGGCCGCCGCTGAAGAAGGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
............TCTTGGAGTTCATCAGGTCACGGCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
......................CATCAGGTCACGGCCGCCGCTGAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
droYak3
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAAAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAGT------------------------CC---CAGTGCGCCAGGGAATTCCCAATCCAA---CCGCA----------------CGGCCAGTACCCAATC------CAACCGCAATCCCAACTGCAATC---------C-----------------CTCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCACT-----------TGCAGACTGTGAAATATTGAAATATTGATCT-TGAGGCTTTC-CCA-CCTTTCGACTTCATTTC-ATTTTGCCG-TGATT-----------------------------------------------------------------------------CCC-----------CA-TTT----TTTGTACCAAATG---C-ATCAAATTGTTGT-TCTCCTTTGAAATAAAAATTATTAGTTC----------ACTGT------------C--------------------------------------------CGTTTTTA------------------TT-------------------------------------------------TTTG---------------TATTTT-C---CGGACCC---------------ACCAGGCCAGCGATCGCCAATTGGGCCCGCC---GCGCATGTGTGAACCTTCTCCGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATTGGGCCCGCC---GCGCATGTGT..............2711.00100001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GCGCATGTGTGAACCTTCTC....2111.00100100000000
droEug1
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AGCG---------CCC------------------------------------------------------CCAAT------------------------CC---CATTGCCTCAACAAATTCCAAATCCAT---CCGCA----------------TCGCAAGTCCCAAAAG------CAACCTCAATTCCCACTGCAATACCACTG---C-----------------CCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT----------TTGCGGAGTGTGAAA--------TATTGATCT-TGTGGCTCTT-ATT-CCTGACCATTTCATTTC-TGTTTGTCT-TGATCTCATGACCTT-----------------------------------------------------------------TGA-T-----------TG-TTT----TTTGTACCAAAAA---AAAGCAAATTACTTT-TCGCTCTTCGAATAAAAATTATAAGTTC----------ACTAT------------T--------------------------------------------TAATATTG------------------TATC-----------------------------------------------TTTG---------------TGATTT-C---CGGATCC---------------TTCAGGCCAGCGATCGCCAATTGGGGCCACC---CCGCATGTGCGAACCTTCTCCGCGSizeHit CountTotal NormTotal
No Reads
droBia1
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCGAT------------CCCAATTCCAATCC---AACTGCCACAACAAATTCCAAATCCAT---GCGCA----------------CCGCCAGTCGCAAAGG------CGCCCTCAATTCCAACTGCAGTC---------C-----------------CCCATCACCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCAGAGTGTGAAA--------TATTGATCC-GGTGGCTTTC-CTT-CCCGCCGATTCCATTTC--ATTTGTCC-TGATCACTTGA-------------------------------------------------------------------------------------CC-TTT----TTTGTACCCAAAGAAAA-ATCCAATTGTTGT-TCGCCTTTCGAATAAAAATTATTAGTTT----------ACTAT------------A--------------------------------------------CGTTTCTG------------------TA-------------------------------------------------TCTG---------------TACTTC-T---CGGATCC---------------ACCAGGCCAGCGAGCGCCAACTGGGGCCGCC---GCGCATCTGTGAGCCTTCTCCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCGAT-----TCCCATTC-CAATTGCAATCC---CACTGCCACAACCAATTCCCAATCCAT---CCGCA----------------CCGCCAGTCCAAAAGCCAAATGCAACCTCAATTCGAACTGCAGTCACAGTC---A-----------------CCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCAGAGTGTGAAA--------TATTGATCT-TGTGGCTTTC-CTT-CCTGTCGATTCCATTTCATGTTTGTCTGTAATCGCATAACC----------------------------------------------------------------------CT------------C-ATT----TTTGTACCAAAAA---A-ATTCAATTGTTGT-TCTCCATTCAAATAAAAATTATTAGTTT----------ACTAT------------A--------------------------------------------CTTTTCTGTATC------------TGTA-------------------------------------------------TCTG---------------TACTTT-T---TGGAACC---------------ACCAGGCCAGCGAACGTCAGCTGGGGCCACC---GCGCATCTGCGAGCCTTCTCCGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CCCACGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAGA---------CCC------------------------------------------------------TCAAT------------------------CC---CAGTGCCACGGCAAATTCCAGATCCAT---CTGCA----------------CCGCCAGTTCCGAAAG------CAACCTCAATTCCAACTGCAGTC---------C-----------------CCCACCATAAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCACAGTGTGAAA--------TATTGATCA-TGTGGCTTTC-CTT-CCTGTCGATTCAATTTC--ATTTGTCT-TGATCTCGTGACCAT-----------------------------------------------------------------TTCTT-----------CT-TTT----TTTGTACCAAAAG---A-ATCAAATTGTTTT-TCTTACTCGAAATAAAAATTATTGGTTC----------ACCTT------------T--------------------------------------------CGTTTCTG------------------TA-------------------------------------------------TCTG---------------TATTTTCC---CGGATCC---------------AACAGGCAAGTGAACGCCAATTGGGACCGCC---GCGCATGTGCGAACCGTCGCCGCGSizeHit CountTotal NormTotal
No Reads
droRho1
CCCACGCCATGATCTTGGAGTTCATTAGGTCACGGCCGCCGCTGAAGAAGGTGTGT-AAAG---------CCC------------------------------------------------------CCAAT------------------------CC---CACTGCCACAACGAATTCCAAATTCAT---CCGCA----------------CCGCCAGTGCCGAAAG------CAACCTCAATTCCAACTGCAATC---------C-----------------CCCATCATCGAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGCAGAGTGTGAAA--------TATTGATCT-CGTGGCTTTC-CTT-CCTGTCGCTTCCATTTT--GTTTGTCT-TGATCTCTTCACCAT-----------------------------------------------------------------T---------------TT-CTT----TTTGTACCGAAAG---A-ATCAAATTGTTTT-TCTCATTTAAAATAAAAATTATAAGTTC----------ACTAT------------C--------------------------------------------CGTTTCTGTTTC------------TGCA-------------------------------------------------TCTG---------------TATTTTCC---CGGAACC---------------AACAGGCCAGTGAACGCCAATTGGGGCCGCC---GCGCATGTGCGAACCTTCGCCGCGSizeHit CountTotal NormTotal
No Reads
droFic1
CCCACGCGATGATCTTGGAGTTCATCAGGTCACGGCCGCCGCTAAAGAAGGTGTGTAGTAGA-------GCCC------------------------------------------------------CCAAT------------------------CC---CAGTGCCACAGCCAATTCCAAATCCAT---CCGCA----------------TCGCCAGTCCCAAAAT------CAACCTCAATTCCAACTGCAATC---------G-----------------GCCATCATCAAAAT------------------------------------------CCC----------------------------------------CATTTGCCGCT-----------TGTAGAGTGTGAAA--------TATTGATCT-TGTGGCTTTC--TT-CCTGCCGATTCCATTTC--ATTTGTCT-TGATCTCTTA-C---A--------------------------------------------------------------------C-----------TG-TTT----TTTGTACCGCATG---A-ATCAAATTGTTTTTTCTCCGTTCAAATAAAAATTGTAAGTTT----------ACTAT------------C--------------------------------------------CGTTTTC-----------------TTTA-------------------------------------------------TCTG---------------TGCTTTTT---CGGATCC---------------ATCAGGCCAGCGATCGCCAGTTGGGACCGCC---GCGGATGTGCGAACCTTCGCCGCGSizeHit CountTotal NormTotal
No Reads
droKik1
CCCATGCCATGATCTTGGAGTTCATTAGGTCACGACCGCCGCTCAAGAAGGTGTGT-AAAG---------CTC------------------------------------------------------CCAAA------------CCCCCT------GC---TAAACCAACAACAAATTCCAAGTCAAA---GTATA----------------TTCTCAATA------T------GAATCTCAATTTGAAGTCCAAT-----------------------------TCAATATCAAAAT------------------------------------------CCC----------------------------------------CACTTGGCGCT-----------TGCAGTGTGTGAAA--------TTTTAAAC--------------------GTTGATTTAATTTC--CCTTGACT-TGCCTTC------------------------------------------------------------------------------------------------------------------------------------TTGCTTTCAAATAAAAATTGTTAGTTTTTAATAGAACACTGT------------C--------------------------------------------TAACCTTG------------------AGTG----------------------------------------------TTT-----------------TGTTTT-T---CGAATTT--GTATTTAAATTTTGACAGGCCTCGGAACGGCAATTAGGACCGCC---GCGCATGTGCACACCCTCGCCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
CCCATGCCATGATCTTGGAGTTCATCAGGTCACGGCCGCCACTCAGAAAGGTGTGT-ACGACCACCAAAGCCACCACC---------------------------------------------------AATCAGAACCCCATTCCCAATCCCAATCC---CACTGCCACATCAAATTCAAAATCAAGTAACTGCAACCAGTCAAGT---AT-------CATCCAAAT------CAAAATCAAAACCAACTGCAAAC---------C-----------------AAATCAATCAAAAT------------------------------------------CTC----------------------------------------CATATGCCGCT-----------TGCAGAGTGTGAAA--------TTTTTACGACTTCGACTTTC-ATT-C--GACGATTCCATTTG--GTTTGTCT-TGACCTCGCG----TTA-------------------------------------------------------------------------------TT-TTT----TTTGTACCGAATC---C-GTAAAATTGTTTC-T-TGTTTTCAAATAAAAATTACTAGTTTCTCTTGCAAAAATCTCAAAAAAAATGTA--------------------------------------------TGTTTTTC---------------------------------------------------------------------------------------------------------T---------------TAAAGGCCTCTGAGCGGCAGTTAGGACCGCC---TCGTATGTGCACACCCTCGCCCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCC---TCGTATGTGCACACCCTCG.....2511.001000001
...................GTTCATCAGGTCACGGCCGCCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTGAGCGGCAGTTAGGACCGCC---T.......................2711.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCACACCCTCGCCCC.2111.001010000
droBip1
CCCATGCCATGATCTTGGAGTTCATCAGGTCGCGGCCTCCGCTCAGGAAGGTGTGT-ACCAC---TAAAGCCA------------------------------------------------------CCAATCAGAACCCCATTCCCAATCCCAATCC---CACTGCCACATCATATTCAAAATCAAGTAACTGCAACCAGTCAAGTACTAT-------CGTCCAAAT------CACAATCAAGACCAACTGCCAGC---------CACGG--------------AATCCATCAAAAT------------------------------------------CCC----------------------------------------CCTATGCCGCT-----------TGCAGAGCGTGAAT--------TTTTTACCC-AGCGACTTTC-CTT-C--GACGAACC-CTATG--ATTTGACT-TGACCTCACG----TTA--------------------------------------------------------------------------------T-TTT----TTTGTAACGAATC---C-ATCAAATTGTTTC-T-TGTTTTGAAATAAAAATTACTAGTTTCACTTGCAAAGATCT-AAACAAAAT-TA--------------------------------------------TGTTTTC----------------------------------------------------------------------------------------------------------T---------------TAAAGGCTTCTGAGCGGCAGTTAGGACCGCC---GCGGATGTGCGAACCCTCGCCCCGSizeHit CountTotal NormTotal
No Reads
dp5
CCCATGCCATGATCTTGGAGTTCATTAGGTCACGGCCGCCATTGAAGAAGGTGTGT-AGTG---------CCC------------------------------------------------------CCAAT------------------------CCAACCACAACCACAACCATTTCCAGTCCCAA---GTGAA----------------------------------------------------------------------------------------------------CC------------------------------------------CCC----------------------------------------CCTCTGG-GCT----------TTCTGGCGGGT--------------------------TT----AT--AT--T----------------------T-TTACTTCACT----TTC--------------------------------------------------------------------------------T-TTA----TGGAGGAAGCATC---G-CTGCATATATTTT-G-TGGCTTCCAATAAAATTTAACAGTTCCATTTTCGAAG----CAAAACTAATTTTCGTTGCCATATTTTTTCTTTTCTTGTTCTATTTCCCTT------------------------------------------------------------------------------------CCC---------------CACCTT-C---ATCGTCC---------------ACCAGGCCTCCGAACGGCAACTGGGCCCGCC---CCGGATGTGCACGCCCACGCCCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTGGGCCCGCC---CCGGA...................2111.0010100000000
............TCTTGGAGTTCATTAGGTCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................GGAGTTCATTAGGTCACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
droPer2
CTCATGCCATGATCTTGGAGTTCATTAGGTCACGGCCGCCATTGAAGAAGGTGTGT-AGTG---------CCC------------------------------------------------------CCAAT------------------------CCAACCACAACCACAACCATTTCCAGTCCCAA---GTGAA-----------------------------------------------------------------------------------------------------C------------------------------------------CCC----------------------------------------CCTCTGG-GCT----------TTCTGGCGGGT--------------------------TT----AC--AT--T----------------------T-TCACTTCACT----TTC--------------------------------------------------------------------------------T-TTA----TGGAGGAAGCATC---G-CTGCATATATTTT-G-TGGCTTCCAATAAAATTTAACAGTTCCATTTTCGAAG----CAAAACTAATTTTCGTTGCCATATTTTTTCTTTTCTTGTTCTATTTCCCTT------------------------------------------------------------------------------------CCC---------------CACCTT-C---ATCGTCC---------------ACCAGGCCTCCGAACGGCAACTGGGCCCGCC---CCGGATGTGCACGCCCACGCCCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCCATGCCATGATATTGGAGTTCATCAGGTCACGGCCGCCATTGAAGAAGGTGGGT-AGCAGCAGCATAAGCAGCAGCAGCAACGGCAATGGCAGTAAAGTCGAAACGCCGACAACTACTACTGGCCCCAAT------------------------CT-----------------A-ACCAAATCCAA---AGGCA----------------TAACCGCAATCCAAAT------GAATCCAAGTCCCAATAACAA----------------------------------------AATCGAGTATCCAATTTAACTTTCCCTTCTTCATCTTCCCTCCCACTCACTCTTCCACTCTTTGTCACACTCACACACCATCTACCTTACTCTGTCGCTCTTCACATCTCTGCTGTGTGTT----------------------------------------------------------CGTCA-AGAAAATTTAA---T--TTTGTTTTAATAAAAATTGAAATTGTTGTCTGTAACTCATTTTTGCATTACAAATTGTTGTTG-------------------------------------------------------AT-TTACCT---------------------------------TTGT------------T--------------------------------------------TG---------------------------------------------------------------------------TTTG---------------TTTTTT-TGTTTGGAAAATAATATTT--ATATATATAGGCCTCGGAGCGTCAATTGGGGCCGCCATTGTTGAAGTGCATCCCATCGCCGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........GATATTGGAGTTCATCAGGTCACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00220000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTGTT----------------------------------------------------------CGTCA-AGAAAATTTAA---T--T.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
...............TGGAGTTCATCAGGTCACGGCCGCCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGTTGTCTGTAACTCATT...............................................................................................................................................................................................................................................................................................................................................................................2211.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCAATTGGGGCCGCCATTGTTG....................2611.00100010
...............................................................AGCATAAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100010
.............................................................................CAGCAACGGCAATGGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100010
droVir3
CCCACGCGATGATCTTGGAGTTCATTAGGTCACGGCCGCCATTAAAGAAGGTGTGT-GTTGC-------GTTC------------------------------------------------------CCTAT-----------GCCCATT------TC---GAATAGCCAAACAAATGCTTAATATGA---CTGTC----------------CAAT----GTTCCAAT------GTTCA---------ACTA--GTTACATATATGCACTGTCT----------CC---------TAT------------------------------------------CGC----------------------------------------GCTCTTTCGCT-----------TTCAATTTGTGAAT--------TTTTGTGTT-A---TT----AT--GC-----------ATATACTATATGTATATATACATATATAT----------------------------------------------------------------------AT------------A-TAT------TTTGCTAAAAT---A-AACCCATTCGTTT-ACTCAATTCAATTAA-------------------------------------------------------------------------------------------------TGGCATATGGA-------------------------------------------TTTTCATTAATGTTTACAACAAATGCTCCTCATTGT-T---TTC--TT---------------TAAAGGCCTCGGAACGCCAACTGGGCCCACC---ATTGAAATGCACGCCCTCGCCCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......GATGATCTTGGAGTTCATTAGGTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
.....GCGATGATCTTGGAGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000100000000000000000000000000000000000000000000000000
droMoj3
CGCATGCGATGATCTTGGAGTTCATCCGGTCACGGCCGCCATTAAAGAAGGTGTGT-GTTGC-------GTTC------------------------------------------------------CCAAT-----TTCCA------TA------GC---AAATACTTCAGCAAATGCCTAATGGAG---TCGTT----------------CAAGACCATGCAAAAT------CTAT------------TGATATT---------TATTGTCTCTTTCAAATCCACCTC-----TCT------------------------------------------CTC----------------------------------------ACTCTCACTCT-----------ATCAAAATGTGAAC--------AATTTTTGC-TGTTGTAT------GTATGAAGATGTTAATAT--ATAT----------ATAT----------------------------------------------------------------------------------------A-TATTTTTTATAAAATAAATA---C-ATCGG----------------------------------------------------------------------------------------------------CTTGCTCACTTTTAACATAC-TTGCATTTGAGT-----AATAAATGTAAAAACTATTATATATAGCAACAATTAATTATTATTAATTATG---------------AATTGC-T---CTAATT-----------------CAAGGCCTCGGAACGCCAGCTAGGTCCCCC---TCTGAAGTGCACGCCCTCACCCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................GGCCGCCATTAAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAT------GTATGAAGATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------------AATTGC-T---CTAATT-----------------CAAG.....................................................2011.001100000
......................CATCCGGTCACGGCCGCCATTAAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...ATGCGATGATCTTGGAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
CCCATGCGATGATCTTGGAGTTCATCAGGTCACGGCCGCCATTAAAGAAGGTGTGT-GTTGC-------GTCC------------------------------------------------------CCAAT-----TCCCATACCCACT------AC---AGAAACCAAAACGAATACCCA------------------------------------------------------------------AC----------------------------------------------AT------------------------------------------CTC----------------------------------------TATT----------------------GACT-----------------------------------------------------ATT--ATTTACCA-TTATT-----------------------------------------------------------------------------TAT--------TACTA-TTT----TTTATTACAAA-----------------------------------------------------------TATTT-ATT--ACTT-TT--------------------------------------------CTTTTGT----------------------------------------------------------------------------------------------------------G---------------TTCAGGCCTCGGAACGTCAGTTGGGCCCACC---GCTCAAGTGTACGCCTTCACCCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:11 AM