ID:

dsi_27187

 Coordinate:

2r:5756230-5756379 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.8 -29.7 -29.7

Flybase annnotation

CDS [2r_5756380_5756446_-]; exon [2r_5756380_5756683_-]; intron [2r_5753774_5756379_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAGTCGACGCAACACCGCCACGGAATTCAGCTATATCCTGCAGCGCCAGGTGAGTTGGCCCCCAATTACATGCACTTAGTTTGAGTCTCAGAAGCGCCTGTTTCTCGAGTCCTCGCCCCGAATCATTGAGAGCACCCACAACTCGAGCACTTCCTTGCAGCACCCTAATTGCACACTTCCCAGCCGCAGGAACTCCGACTAATTGCAGCCACACGAACTGACTGATTGGCCAGCTGCCCACTGAGTGCA
**************************************************(((((((((...)))))).))).......(((((((((((((((((....)))))).)))..(((...............)))........))))))))..(((((.((.((.....................)).))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................ACCCACAAGTCGAGCA.................................................................................................... 16 1 4 4.75 19 9 0 0 5 0 2 3 0
........................................................................................................................................................................ATTGCACACTTCCCAGCC................................................................ 18 0 1 3.00 3 0 3 0 0 0 0 0 0
.......................................................................................................................................................................AATTGCACACTTCACGGCCGGA............................................................. 22 3 2 1.50 3 0 0 3 0 0 0 0 0
.......................................................................................................................................................................AATTGCACACTTCACGGCCGG.............................................................. 21 3 4 1.25 5 0 0 5 0 0 0 0 0
.....CGACGCACCCCCGCCACGCA................................................................................................................................................................................................................................. 20 3 5 1.00 5 4 0 0 0 0 0 1 0
.......................................................................................................................................................................AATTGCACACTTCACGGCCG............................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................CCCACAAGTCGAGCA.................................................................................................... 15 1 18 0.89 16 9 0 0 2 0 0 4 1
.......................................................................................................................................................................TATTGCACACTTCCCA................................................................... 16 1 3 0.67 2 0 0 0 0 0 2 0 0
...GTCGACGCAATACCGCCCGG................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 1 0 0 0
......................................................................................................................................ACCCACAAGTCGAGC..................................................................................................... 15 1 16 0.44 7 3 0 0 0 0 0 0 4
.....CGACGCATCCCCGCCACGCA................................................................................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................ACCAGCCGCGGGAACTCC..................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0
..................................TATCCCGCAGCGCCA......................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0
.....................................................................................GTCTCTGAATCGCCTGT.................................................................................................................................................... 17 2 8 0.13 1 0 0 0 1 0 0 0 0
....................................................................................AGTCTCTGAATCGCCTGTA................................................................................................................................................... 19 3 9 0.11 1 0 0 0 1 0 0 0 0
.....CGACGCACCCCCGCCACGC.................................................................................................................................................................................................................................. 19 3 11 0.09 1 1 0 0 0 0 0 0 0
.......................................................................................................................................CCCACAAGTCGAGCAGTT................................................................................................. 18 2 12 0.08 1 0 0 0 0 0 0 1 0
.....CGACGCACCCCCGCCAC.................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................CATTGCACACTTCCC.................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................................................................CCCACAAGTCGAGCAGT.................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TGTCAGCTGCGTTGTGGCGGTGCCTTAAGTCGATATAGGACGTCGCGGTCCACTCAACCGGGGGTTAATGTACGTGAATCAAACTCAGAGTCTTCGCGGACAAAGAGCTCAGGAGCGGGGCTTAGTAACTCTCGTGGGTGTTGAGCTCGTGAAGGAACGTCGTGGGATTAACGTGTGAAGGGTCGGCGTCCTTGAGGCTGATTAACGTCGGTGTGCTTGACTGACTAACCGGTCGACGGGTGACTCACGT
**************************************************(((((((((...)))))).))).......(((((((((((((((((....)))))).)))..(((...............)))........))))))))..(((((.((.((.....................)).))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................CGTGAACGCACGTCGTGGG.................................................................................... 19 2 1 7.00 7 5 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................CGTTCTTGAGTCTGATTAAGGT.......................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................ACCTCCGGAGCGGGCCTTAG............................................................................................................................. 20 3 9 0.78 7 0 0 7 0 0 0 0 0 0
...................................................................................................................................................CGTGAACGCACGTCGTGG..................................................................................... 18 2 7 0.71 5 1 4 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTAAGGACGGTGTGCTTGA.............................. 19 2 5 0.60 3 0 0 0 0 3 0 0 0 0
....................................................................................................................................................GTGAACGCACGTCGTGGG.................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................CACAAGAGCGGGGCTTAGTA........................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................GGGGTTATTGAACGTGCATC.......................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................ATTAAGGACGGTGTGCTTGAA............................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................ACGTGAACGCACGTCGTGGG.................................................................................... 20 3 8 0.25 2 0 2 0 0 0 0 0 0 0
.............................................................................................................CAGGAGCGGGGCCTAAT............................................................................................................................ 17 2 10 0.20 2 0 0 2 0 0 0 0 0 0
.............................................................................................................CAGGAGCGGGGCCTA.............................................................................................................................. 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0
.......................................................................................................AGACCTCCGGAGCGGGCCT................................................................................................................................ 19 3 7 0.14 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................CGTGAACGCACGTCGTGGGG................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...........................................................................................................CTCCGGAGCGGGCCTTA.............................................................................................................................. 17 2 8 0.13 1 0 0 1 0 0 0 0 0 0
.........................................................................................................ACCTCTGGAGCGGGCCTTA.............................................................................................................................. 19 3 18 0.11 2 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................ATTAATGACGGTGTGCTTGAA............................. 21 3 9 0.11 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................CGTTCTTGAGTCTGATTAC............................................. 19 3 20 0.10 2 0 0 0 0 0 0 1 1 0
....................................................................................................................................................................................GGTCGGCGTCCATGGGG..................................................... 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0
.......................................................................................GTGTCTTCGCGGAATAAGA................................................................................................................................................ 19 3 15 0.07 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................GTGAACGCACGTCGTGGGG................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................CGTCCTTTAGGCTGA................................................. 15 1 17 0.06 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TTAAGGACGGTGTGCTTGAA............................. 20 3 18 0.06 1 0 0 0 0 1 0 0 0 0
..............................................................................................................AGGTGCGGGGCTCAGT............................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................TCGTGAATCAAACTGAGAT................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................ACGTGAACGCACGTCGTGG..................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................AATAAGGACGGTGTGCTTG............................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
..TCAGCTGCGATGTAGGGG...................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0

Generated: 04/23/2015 at 09:41 PM