dsi_27181

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCCAGCGAAGATTCCGGTCACCAACAGCAACATCAGCAGCAACAGCAACACCAGCAACATCAGCAACCACTAGCCACCACATCAGTCACGGCCGCTTCAACCACATCGGTCTTAGCTAACCAATCGCCCACTAACTCGCAGGCCTCATCCCCCGAAAATTCCCAGGAAGCACTGCCCTTGCTGCGACGCCA ***************************************************************************.......................................................................((..(((...(((.....)))...)))..........))*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head	M053 female body	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR1275487 Male larvae	SRR553486 Makindu_3 day-old ovaries
................................................................................................................................................................CACATCGGTCTTAGCTAACCAATCGCC...............................................................	27	0	1	2.00	2	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCTTAGCTAACCAATCGCCCACTAAC........................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................CCACATCGGTCTTAGCTAACCAATC..................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................................................................CACCAACAGCAACATCAGCAGCA......................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................CGCTTCAACCACATCGGTCTTA.............................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CCACTAACTCGCAGGCCTC.............................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............................................AAGAATCAACGTACGGCCAGC.........................................................................................................................................................................................	21	3	3	0.67	2	0	0	0	0	2	0	0	0	0
........................................................................................................................................................TCTCCAACCACATCAGTCTT..............................................................................	20	3	4	0.25	1	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................GGCCCCATACCCCGAAAA.................................	18	2	4	0.25	1	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................CCCTGAAAATCCGCAGGAAG......................	20	3	12	0.08	1	0	0	0	0	0	0	0	1	0
........................................................................................ACATCAGCAGCAACAGC.................................................................................................................................................	17	0	20	0.05	1	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................CCCGAAAGTCCCCTGGAAG......................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................TAACTCGTAGTCCTCA............................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1

ACGATTTCTGAAACGCGTGCGACTTTAGGTTAAGCTAATACCGGCTCTTAGTTTCACGCCGGTCGCTTCTAAGGCCAGTGGTTGTCGTTGTAGTCGTCGTTGTCGTTGTGGTCGTTGTAGTCGTTGGTGATCGGTGGTGTAGTCAGTGCCGGCGAAGTTGGTGTAGCCAGAATCGATTGGTTAGCGGGTGATTGAGCGTCCGGAGTAGGGGGCTTTTAAGGGTCCTTCGTGACGGGAACGACGCTGCGGT *************************************************************.......................................................................((..(((...(((.....)))...)))..........))***************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head
..........................................................................................................................................................................................GGTGATTGAGCGTCC.................................................	15	0	1	1.00	1	0	1	0	0	0	0	0	0
.............................................................................................................................................GTCAGTGCCGGCGAAGTTGGT........................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................GCTGGTGATTGAGCGTC..................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................TGAATGAGCGTCAGGAGT............................................	18	2	7	0.71	5	0	0	0	4	0	0	0	1
...............................................................................................GTCGTTGTCGTTGTGGTCG........................................................................................................................................	19	0	6	0.33	2	2	0	0	0	0	0	0	0
...............................................................................................GTCGTTGTCGTTCTGGTCCTTGT....................................................................................................................................	23	2	3	0.33	1	0	0	0	0	0	0	1	0
...........................................................................................................................TAGGTGATAGGTGGTGTAG............................................................................................................	19	2	3	0.33	1	0	0	0	0	1	0	0	0
................................................................................................................................................................................TTGGTTAGCGTGTGA...........................................................	15	1	10	0.30	3	0	1	0	0	0	2	0	0
.....................................................................................................GTCGTTGTGGTCGTTGTAGT.................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................GTGGTGATTGAGCGTCCG................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0
.................................................................................................................................................TTGCTGGCGAAGTTGGTATA.....................................................................................	20	3	5	0.20	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGTGATTGAGCGTCC.................................................	15	1	7	0.14	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................................AGCGGGCAATTGAGCGT...................................................	17	2	10	0.10	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................CGGTGACTGAGCGTCCG................................................	17	2	19	0.05	1	0	1	0	0	0	0	0	0
..................................................................................TGTCGTCGTAGTCGTCGTTGTCGTT...............................................................................................................................................	25	1	20	0.05	1	1	0	0	0	0	0	0	0
.......................................................................AGGCGAGTGTTAGTCGTTG................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGCGTCCGGAGTCAGGGTC.....................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:12195945-12196194 -	dsi_27181	TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGC------AGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCCGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGCCA
droSec2	scaffold_16:729752-730001 -		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGC------AGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCCGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGCCA
dm3	chr2L:12539437-12539692 -		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCAAAGATTCCGGTCACCAACAGCAACATC---AGCAGCAACAGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCCTTGCTCCG---ACGCCA
droEre2	scaffold_4929:12878898-12879153 +		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACAGC---AACATCAGCAGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGACA
droYak3	2L:8978777-8979032 -		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACAGC---AACATCAGCAGCAACAGCAACACCAGCAAC------ATCAGCAAACACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCATCAACC------ACATCGGT---CCTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGCCA
droEug1	scf7180000409122:930552-930807 -		TGCTAAAGACTTTGCGTACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGCAGC---AGCAACAACAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCATCAGTCAC---C----------------------------------------------------------GCCGCTTCCGCC------ACAACGAC---TTTAGTTAA--------TCAGTCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCATT--GCCCTTGGTGCG---ACGCCA
droBia1	scf7180000302422:424470-424719 +		TGCTGAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGC------AGCAACAGCAACACCAGCAGC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCTC---C----------------------------------------------------------GCCGCCTCAGCC------ACATCGGC---GTTAGCTAA--------CCAGTCGCCCGCTAACTCGCAGGCCTCATCCCCTGAAAATTCTCAGGAAGCACT--GCCCTTGGTGCG---ACGCCA
droTak1	scf7180000415865:25240-25498 +		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACAGC---AACATCAGCAGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCAGTAGTTAG---C----------------------------------------------------------GCCGCTTCAGCC------ACATCGTC---TTTAGCTAA--------CCAGTCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCTCTGGTGCG---ACGCCA
droEle1	scf7180000491028:2562936-2563185 +		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAGCAGC---AGC------AACAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------G---CCACATCA---GTCAC---C----------------------------------------------------------GCCGCTTCAGCC------ACATCGAG---TTTAGCTAA--------TCAGTCGCCCACGAACTCGCAGGCCTCATCGCCAGAAAATTCCCAGGAAGCATT--GCCCCTGGTGCG---ACGCCA
droRho1	scf7180000780043:427086-427332 -		TGCTAAAGACTTTGCGCACGCTGAAATCTAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAGCAGC------------AGCAACAGCAACACCACCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------G---CCACATCA---GTCAC---C----------------------------------------------------------GCCGCTTCAGCC------ACATCGAG---CTTAGCTAA--------CCAGTCGCCCACTAACTCGCAGGCCTCATCGCCGGAAAACTCACAGGAAGCACT--GCCCTTGGTGCG---ACGCCA
droFic1	scf7180000454015:441141-441393 -		TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAACAACAGC---AGC------AGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------G---CAACATCA---GTCACATCA----------------------------------------------------------GCCACATCGGCC------GCATCGAC---CTTAGCTAA--------TCAATCGCCCACTAACTCGCAGGCCTCGTCCCCGGAAAACTCGCAGGAAGCACT--GCCTCTTCTGCG---ACGACA
droKik1	scf7180000302472:919292-919538 -		TGCTAAAGACTTTGCGGACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCGGGTCACCAACAGCAACAGC---AGCAGC------------------AGCATC------AGCAGCCTCCACTAGCC--------------------------------------------------------------AGCACCTCCTCATCA---GTCAACGCA----------------------------------------------------------GCCAGCGCAGCA------GCATCGAC---TTTAGTTAA--------TCAGTCGCCCACTAACTCGCAGGCATCTTCGCCGGAAAACTCACAGGAAGCCCT--GCCCCTTGTGCG---CCGCCA
droAna3	scaffold_12916:12857457-12857741 +		TGCTGAAAACTTTGCGTACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGTC------AGCGAAGATTCCGGTCATCACCAGCAGCAGC---AACACCAACAACAACAGCAACA------------------------A---TC-AGCCACAACAAGCACCGCAGCATCAGCAGCAGCATCAGCA-------------------------T---CAACA---------------------------------------------GCAACAGC-AACAGCAGCAGCAGC-A--GCAACATCATCC------ACTTCGA------TAGCTAA--------TCAGTCGCCCACTAACTCACAGGCCTCATCGCCGGAAAACTCCCAGGAAGCCCT--GCCCCTGCCCCT---ACTCC-
droBip1	scf7180000396580:666887-667136 -		TGCTGAAGACTTTGCGCACGCTGAAGTCCAATTCGATTATGGCCGAGAATCAAAGCGCGGTC------AGCGAAGATTCCGGTCACCAACAGCAGCAGC---AGCAGC------AGCACCAGCATCAACAAC------AGCA---ACC--------------------------------------------------------------AGCCACCAGCA---CCACATCA---GTCAC---C----------------------------------------------------------G---CAGCAGCCTCATCGGCCTCGA------TAGCTAA--------TCAGTCGCCCACCAACTCGCAGGCCTCGTCGCCGGAAAACTCCCAGGAAGCCTT--GCCCCTCGTGCG---CCGCCA
dp5	4_group3:3256773-3257063 -		TGCTAAAGACTTTGCGGACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCAACATCAAAAACAAC---AACAGC---AACAACAGCAAC---------CACTCAATCAC---------TC-AAC-------------------------------------CACAGCGGCAACAGCAGCCGCAAGCA---CCACAACA---ACAACCGCAGCAGCAGCAACACCAACAACAACAGCAGCAACAACTGCTGG-------------------------------------------CCAATCAATCAA--------TCAATCGCCCACTAACTCCCAGGCCTCATCACCGGAGAACTCGCAGGAAGCGCT--GCCCTCAACG-------GCCG
droPer2	scaffold_1:4738307-4738594 -		TGCTAAAGACTTTGCGGACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCAACATCAAAAACAAC---AGC------AACAACAGCAAC---------CACTCAATCAC---------TC-AAC-------------------------------------CACAGCGGCAACAGCAGCCGCAAGCA---CCACAACA---ACAACCGCAGCAGCAGCAACACCAACAACAACAGCAGCAACAACTGCTGG-------------------------------------------CCAATCAATCAA--------TCAATCGCCCACTAACTCCCAGGCCTCATCACCGGAGAACTCGCAGGAAGCGCT--GCCCTCAACG-------GCCG
droWil2	scf2_1100000004521:10327327-10327542 -		TGCTGAAAACTTTACGTCAGCTGCAAACCATTTCGATTATGGCCGAGAATCAAAGTGCAGCAAATAGCAAAGAAGATTCCGGTCACCAAAAACATCAGC---AA---------CAAAATCAACAACAGCAAC------ATCAATCTAACTCAGCA-----------------------------------------------------------------G---CAACAACT---TCCTC---A----------------------------------------------------------ACAACTTCATCA------ACTTCAAT---C------AACAACATGTTTGATCGACAACTGAATGCCAAATTTAAGCCCC--------------------------------------------
droVir3	scaffold_13246:1795341-1795591 -		TGCTGAAAACTTTACGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGCGCTGCC------AACGAAGATTCCGGTCAGCAACAGCAGCAAC---ATCATCATCAACACCAGCAACAGCAACAGC------AACAGCAGCAACAAGTC-----------------------------------------------------------------A---GCACAGCG------------------------------------GCAGCAACAATTGCTAATA------GCGGTCAGG----------------------------------------------CCAGC-G-GCAGCAACTCGGCCGCCTCCTCGCCCGAAAGTTCACAGGAAACGCAC-ACAATTGTTGCCAACACAACA
droMoj3	scaffold_6500:4147636-4147877 +		TGCTGAAAACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGCGCTGCT------AACGAAGATTCCGGTCAGCAACAACAGCAAC---AACAGC------------AACAGCAGCAAC------ATCAACAACAAC--------------------------------------ATCAGCA-------------TCAGCTC--AGCA---CAGCAGCA------------------------------------------ACAATTGCAAATA------GCGGTCAGG----------------------------------------------CCAGC-G-GCAGCAATTCGGCAGCCTCATCGCCCGAAAGTTCACAGGAGACGCACAGC-ATCGTAGCC---AACACA
droGri2	scaffold_15252:15466284-15466517 +		TGCTAAAAACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGCGCTGCC------AACGAAGATTCCGGTCAGCAACAACAGCAAAATCAAC------ATCAACAGCAACA------AC------AC------------GCCAGCAACAACA-------------CAGCAGCAGCATTAGCA-------------------------G---CAACA---------------------------------------------ACAATTGCTAATAGTAGCAGCAGTCAGG----------------------------------------------CAAGT-G-GCAGCAATTCAGCCGCCTCCTCACCCGAAAACTCGCAAGAAA---------------------ACACAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGC------AGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCCGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGCCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................................................................C------ACATCGGT---CTTAGCTAA--------CCAATCGCC....................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................T---CTTAGCTAA--------CCAATCGCCCACTAAC.............................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CC------ACATCGGT---CTTAGCTAA--------CCAATC.......................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CACCAACAGCAACATC---AGC------AGCA......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGCTTCAACC------ACATCGGT---CTTA..........................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCACTAACTCGCAGGCCTC..................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................ACATC---AGC------AGCAACAGC.................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGC------AGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCCGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAGGAAGCACT--GCCCTT...............	21	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCAGGAAGCACT--GCCCTTGCTGC..........	27	1	1.00	1	1	0	0	0
................................................................................................................GCAACAGCAACACCAGCAAC------...............................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0

dm3

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCAAAGATTCCGGTCACCAACAGCAACATC---AGCAGCAACAGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCCTTGCTCCG---ACGCCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCAGGAAGCACT--GCCC.................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ACC------ACATCGGT---CTTAGCTA......................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TCCCCTGAAAATTCCCAGGAAGCACT--.....................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AACC------ACATCGGT---CTTAGCTAA--------CC...........................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCCAATTCGATTATGGCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCT.....................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TTCAACC------ACATCGGT---CTTAGCTAA--------CCAA.........................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
....................................................................................................................................................................................................................................ATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------.........................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................AACAGCAACATC---AGCAGCAAC..........................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................CAACATC---AGCAGCAACAGCAACAG..................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CAACATC---AGCAGCAACAGCAAC....................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CAACAGCAACACCAGCA.......................................................................................................................................................................................................................................................................................................	17	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.............................................................................................AACATC---AGCAGCAACAGCAAC....................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................CATC---AGCAGCAACAGCAACAGC.................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ACAGCAACATC---AGCAGCA............................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................CAGCAACAGCAACAGCAAC..............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACAGC---AACATCAGCAGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCTTCAACC------ACATCGGT---CTTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................ATCA---GTCAC---G----------------------------------------------------------GCCGCTTCA..................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
........................AATCCAATTCGATTATGGCCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
..............................ATTCGATTATGGCCGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGCACT--GCCCTTGCTGCG---ACG...	26	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AAAATTCCCAGGAAGCACT--GCC..................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAGCACT--GCCCTTGCTGCG---ACGAC.	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................GAAGATTCCGGTCACCAACAGCAACA........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...............................TTCGATTATGGCCGAGAATCAAAGTGC...............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................C-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGC......................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATCGCCCACTAACTCGCAGGC.....................................................	21	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AGCACT--GCCCTTGCTGCG---ACGACA	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................TCAGCAGCAACAGCAACACCAGCAAC------A..............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..................................................CAAAGTGCGGCC------AGCGAAG..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0

droYak3

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACAGC---AACATCAGCAGCAACAGCAACACCAGCAAC------ATCAGCAAACACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCAC---G----------------------------------------------------------GCCGCATCAACC------ACATCGGT---CCTAGCTAA--------CCAATCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCCTTGCTGCG---ACGCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................TCGGT---CCTAGCTAA--------CCAATCGCCCAC.................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................AAAGTGCGGCC------AGCGAAGATTCC.........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................AAATCCAATTCGATTATGGCCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GAAAATTCCCAGGAAGCACT--GCCCTTGC.............	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................AATCCAATTCGATTATGGCC.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
TGCTAAAGACTTTGCGCACGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................GAAATCCAATTCGATTATGGCCGA...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................ATTCCGGTCACCAACAGCAACAGC---AACAT..............................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CCACATCA---GTCAC---G----------------------------------------------------------GCCGC......................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................GAAGATTCCGGTCACCAACAGCAAC.........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................ATCAAAGTGCGGCC------AGCGAAG..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................AACAGC---AACATCAGCAGCAACAGCA................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TGCTAAAGACTTTGCGTACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGCAGC---AGCAACAACAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCATCAGTCAC---C----------------------------------------------------------GCCGCTTCCGCC------ACAACGAC---TTTAGTTAA--------TCAGTCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCATT--GCCCTTGGTGCG---ACGCCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCTGAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACATC---AGC------AGCAACAGCAACACCAGCAGC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCA---GTCTC---C----------------------------------------------------------GCCGCCTCAGCC------ACATCGGC---GTTAGCTAA--------CCAGTCGCCCGCTAACTCGCAGGCCTCATCCCCTGAAAATTCTCAGGAAGCACT--GCCCTTGGTGCG---ACGCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAACAGC---AACATCAGCAGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------A---CCACATCAGTAGTTAG---C----------------------------------------------------------GCCGCTTCAGCC------ACATCGTC---TTTAGCTAA--------CCAGTCGCCCACTAACTCGCAGGCCTCATCCCCTGAAAATTCCCAGGAAGCACT--GCCTCTGGTGCG---ACGCCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAGCAGC---AGC------AACAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------G---CCACATCA---GTCAC---C----------------------------------------------------------GCCGCTTCAGCC------ACATCGAG---TTTAGCTAA--------TCAGTCGCCCACGAACTCGCAGGCCTCATCGCCAGAAAATTCCCAGGAAGCATT--GCCCCTGGTGCG---ACGCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCTAAAGACTTTGCGCACGCTGAAATCTAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAGCAGCAGC------------AGCAACAGCAACACCACCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------G---CCACATCA---GTCAC---C----------------------------------------------------------GCCGCTTCAGCC------ACATCGAG---CTTAGCTAA--------CCAGTCGCCCACTAACTCGCAGGCCTCATCGCCGGAAAACTCACAGGAAGCACT--GCCCTTGGTGCG---ACGCCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCTAAAGACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCACCAACAACAACAGC---AGC------AGCAACAGCAACACCAGCAAC------ATCAGCAACCACTAGCC-----------------------------------------------------------------G---CAACATCA---GTCACATCA----------------------------------------------------------GCCACATCGGCC------GCATCGAC---CTTAGCTAA--------TCAATCGCCCACTAACTCGCAGGCCTCGTCCCCGGAAAACTCGCAGGAAGCACT--GCCTCTTCTGCG---ACGACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCTAAAGACTTTGCGGACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCGGGTCACCAACAGCAACAGC---AGCAGC------------------AGCATC------AGCAGCCTCCACTAGCC--------------------------------------------------------------AGCACCTCCTCATCA---GTCAACGCA----------------------------------------------------------GCCAGCGCAGCA------GCATCGAC---TTTAGTTAA--------TCAGTCGCCCACTAACTCGCAGGCATCTTCGCCGGAAAACTCACAGGAAGCCCT--GCCCCTTGTGCG---CCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGCTGAAAACTTTGCGTACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGTC------AGCGAAGATTCCGGTCATCACCAGCAGCAGC---AACACCAACAACAACAGCAACA------------------------A---TC-AGCCACAACAAGCACCGCAGCATCAGCAGCAGCATCAGCA-------------------------T---CAACA---------------------------------------------GCAACAGC-AACAGCAGCAGCAGC-A--GCAACATCATCC------ACTTCGA------TAGCTAA--------TCAGTCGCCCACTAACTCACAGGCCTCATCGCCGGAAAACTCCCAGGAAGCCCT--GCCCCTGCCCCT---ACTCC-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................ATTCCGGTCATCACCAGCAG..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGAAGCCCT--GCCCCTGCCCC..........	24	1	1.00	1	0	1	0	0	0	0
...............................................AATCAAAGTGCGGTC------AGCGAAGATTCC.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................GCGAAGATTCCGGTCATCACCAGC............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................C-A--GCAACATCATCC------ACTTCGA------TAGC........................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................GAAATCCAATTCGATTATGGCCGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TCACAGGCCTCATCGCCGGAAAACTCC..................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................AGCGAAGATTCCGGTCATCACCAGC............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGCCCT--GCCCCTGCCCC..........	22	1	1.00	1	0	1	0	0	0	0
....................................................................................ATCACCAGCAGCAGC---AACACC.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................CATCATCC------ACTTCGA------TAGCTAA--------TC...........................................................................	24	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................................................TCAGCAGCAGCATCAGCA-------------------------T---CAACA---------------------------------------------GC.....................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........TTGCGTACGCTGAAATCCAATT........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................AGCACCGCAGCATCAGCAGCA...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................TCC------ACTTCGA------TAGCTAA--------TCAGTCGCC....................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................CA-------------------------T---CAACA---------------------------------------------GCAACAGC-AAC...........................................................................................................................................	19	12	0.42	5	4	1	0	0	0	0
.................................................................................................................................................................................................CA-------------------------T---CAACA---------------------------------------------GCAACAGC-AACA..........................................................................................................................................	20	12	0.17	2	0	2	0	0	0	0
.................................................................................................................................................................................................CA-------------------------T---CAACA---------------------------------------------GCAACAGC-AACC..........................................................................................................................................	20	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ACAGC-AACAGCAGCAGCAGC-A--GC.........................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................A-------------------------T---CAACA---------------------------------------------GCAACAGC-AAC...........................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................CAACAGC-AACAGCAGCAG...................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................C-AACAGCAGCAGCAGC-A--GC.........................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................A---------------------------------------------GCAACAGC-AACAGCAGCAGCAGC-..............................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGC-A--GCAACA.....................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................CAACAGC-AACAGCAGCAGCAGC-A--GC.........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................AACAGC-AACAGCAGCAGCAGC-..............................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................AACAGC-AACAGCAGCAGCAGC-A--GCA........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................GCAGCAGCAGC-A--GCAACATC...................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................ACAGC-AACAGCAGCAGCAGC-A--GCA........................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................CAACA---------------------------------------------GCAACAGC-AACAGCAGCAGC..................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................AACA---------------------------------------------GCAACAGC-AACAGCAGCAGCAGC-..............................................................................................................................	27	20	0.05	1	0	1	0	0	0	0

droBip1

TGCTGAAGACTTTGCGCACGCTGAAGTCCAATTCGATTATGGCCGAGAATCAAAGCGCGGTC------AGCGAAGATTCCGGTCACCAACAGCAGCAGC---AGCAGC------AGCACCAGCATCAACAAC------AGCA---ACC--------------------------------------------------------------AGCCACCAGCA---CCACATCA---GTCAC---C----------------------------------------------------------G---CAGCAGCCTCATCGGCCTCGA------TAGCTAA--------TCAGTCGCCCACCAACTCGCAGGCCTCGTCGCCGGAAAACTCCCAGGAAGCCTT--GCCCCTCGTGCG---CCGCCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCTAAAGACTTTGCGGACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCAACATCAAAAACAAC---AACAGC---AACAACAGCAAC---------CACTCAATCAC---------TC-AAC-------------------------------------CACAGCGGCAACAGCAGCCGCAAGCA---CCACAACA---ACAACCGCAGCAGCAGCAACACCAACAACAACAGCAGCAACAACTGCTGG-------------------------------------------CCAATCAATCAA--------TCAATCGCCCACTAACTCCCAGGCCTCATCACCGGAGAACTCGCAGGAAGCGCT--GCCCTCAACG-------GCCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........CTTTGCGGACGCTGAAATCC............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAGCGCT--GCCCTCAACG-------GCCG	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CAACTGCTGG-------------------------------------------CCAATCAAT........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................C---AACAACAGCAAC---------CACTCAAT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CGGAGAACTCGCAGGAAGCGC........................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................GGAGAACTCGCAGGAAGCGC........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................ATTATGGCCGAGAATCAAA...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........................AATCCAATTCGATTATGGC..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACCAACAACAACAGCAGCAAC.....................................................................................................................................................	21	3	0.33	1	0	0	0	1	0	0	0	0	0	0

droPer2

TGCTAAAGACTTTGCGGACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGTGCGGCC------AGCGAAGATTCCGGTCAACATCAAAAACAAC---AGC------AACAACAGCAAC---------CACTCAATCAC---------TC-AAC-------------------------------------CACAGCGGCAACAGCAGCCGCAAGCA---CCACAACA---ACAACCGCAGCAGCAGCAACACCAACAACAACAGCAGCAACAACTGCTGG-------------------------------------------CCAATCAATCAA--------TCAATCGCCCACTAACTCCCAGGCCTCATCACCGGAGAACTCGCAGGAAGCGCT--GCCCTCAACG-------GCCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................ACAACAGCAGCAACAACTGCTGG-------------------------------------------CC...............................................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................AACAACAGCAAC---------CACTCAATCAC---------T................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAACTCCCAGGCCTCATCAC.............................................	20	1	1.00	1	0	1	0	0	0	0
......................................................GTGCGGCC------AGCGAAGATT...........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................CAAAGTGCGGCC------AGCGAAG..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................ACA---ACAACCGCAGCAGCAGC.............................................................................................................................................................................	20	5	0.20	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................CAACACCAACAACAACAGCAGCA.......................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droWil2

TGCTGAAAACTTTACGTCAGCTGCAAACCATTTCGATTATGGCCGAGAATCAAAGTGCAGCAAATAGCAAAGAAGATTCCGGTCACCAAAAACATCAGC---AA---------CAAAATCAACAACAGCAAC------ATCAATCTAACTCAGCA-----------------------------------------------------------------G---CAACAACT---TCCTC---A----------------------------------------------------------ACAACTTCATCA------ACTTCAAT---C------AACAACATGTTTGATCGACAACTGAATGCCAAATTTAAGCCCC--------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................TGTTTGATCGACAACTGAATGCC.........................................................	23	1	2.00	2	2	0	0	0	0
.......AACTTTACGTCAGCTGCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................C------AACAACATGTTTGATCGACAACTGAAT............................................................	28	1	1.00	1	1	0	0	0	0
.........................................................................................AAACATCAGC---AA---------CAAAATCAACAACAG.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.................................................................................................................CAAAATCAACAACAGCAAC------ATCAATC........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................ACATGTTTGATCGACAACT................................................................	19	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAACATGTTTGATCGACAACTGAATGC..........................................................	27	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................AACATGTTTGATCGACAACTGAATGCC.........................................................	27	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGTTTGATCGACAACTGAATGC..........................................................	22	1	1.00	1	1	0	0	0	0
...................................ATTATGGCCGAGAATCAAAGTGC...............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..........TTTACGTCAGCTGCAAACCATTTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACAACATGTTTGATCGACAACTGAATGC..........................................................	28	1	1.00	1	0	1	0	0	0
....................CTGCAAACCATTTCGATTAT.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0

droVir3

TGCTGAAAACTTTACGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGCGCTGCC------AACGAAGATTCCGGTCAGCAACAGCAGCAAC---ATCATCATCAACACCAGCAACAGCAACAGC------AACAGCAGCAACAAGTC-----------------------------------------------------------------A---GCACAGCG------------------------------------GCAGCAACAATTGCTAATA------GCGGTCAGG----------------------------------------------CCAGC-G-GCAGCAACTCGGCCGCCTCCTCGCCCGAAAGTTCACAGGAAACGCAC-ACAATTGTTGCCAACACAACA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................AGCAACAAGTC-----------------------------------------------------------------A---GCACAGCG------------------------------------GC...........................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CACAGGAAACGCAC-ACAATTGTTGC..........	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................TGCTAATA------GCGGTCAGG----------------------------------------------CCAGC-G-GC...................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACAGCG------------------------------------GCAGCAACAATTGCTAAT...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................A---GCACAGCG------------------------------------GCAGCAACAATTGCTAATA------....................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................C---ATCATCATCAACACCAGCAAC..............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CGCCTCCTCGCCCGAAAGTT....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................AGTTCACAGGAAACGCAC-ACAATTGTT............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ATTGCTAATA------GCGGTCAGG----------------------------------------------CCAGC-.......................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................G-GCAGCAACTCGGCCGCCTCCTC...............................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAGC-G-GCAGCAACTCGGC........................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGG----------------------------------------------CCAGC-G-GCAGCAACTCGGCCGCCTCC.................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................GG----------------------------------------------CCAGC-G-GCAGCAACTCGGC........................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GAAACGCAC-ACAATTGTTGCC.........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AGCAACAAGTC-----------------------------------------------------------------A---GCACAGC..................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AATCAAAGCGCTGCC------AACGAA...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CACAGGAAACGCAC-ACAATT...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAGCAACTCGGCCGCCTCCTCG..............................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AATCAAAGCGCTGCC------AACG.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................ACAGCAGCAAC---ATCATCATCA.........................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGC------AACAGCAGCAACAAGT...............................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CCAGCAACAGCAACAGC------AACAGCA........................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGCTGAAAACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGCGCTGCT------AACGAAGATTCCGGTCAGCAACAACAGCAAC---AACAGC------------AACAGCAGCAAC------ATCAACAACAAC--------------------------------------ATCAGCA-------------TCAGCTC--AGCA---CAGCAGCA------------------------------------------ACAATTGCAAATA------GCGGTCAGG----------------------------------------------CCAGC-G-GCAGCAATTCGGCAGCCTCATCGCCCGAAAGTTCACAGGAGACGCACAGC-ATCGTAGCC---AACACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................ATTCGATTATGGCCGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................ATTATGGCCGAGAATCAAA...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................TCGGCAGCCTCATCGCCCGAAA.......................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CGCCCGAAAGTTCACAGGAGACGCAC......................	26	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................GTTCACAGGAGACGCACAGC-..................	20	1	1.00	1	0	0	0	1	0	0
...............................................................................................................................GCAAC------ATCAACAACAAC--------------------------------------ATCAGCA-------------A........................................................................................................................................................................................................................	25	11	0.09	1	1	0	0	0	0	0
.......................................................................................AACAACAGCAAC---AACAGC------------AACAGC...........................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................................AACAGCAAC---AACAGC------------AACA.............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0

droGri2

TGCTAAAAACTTTGCGCACGCTGAAATCCAATTCGATTATGGCCGAGAATCAAAGCGCTGCC------AACGAAGATTCCGGTCAGCAACAACAGCAAAATCAAC------ATCAACAGCAACA------AC------AC------------GCCAGCAACAACA-------------CAGCAGCAGCATTAGCA-------------------------G---CAACA---------------------------------------------ACAATTGCTAATAGTAGCAGCAGTCAGG----------------------------------------------CAAGT-G-GCAGCAATTCAGCCGCCTCCTCACCCGAAAACTCGCAAGAAA---------------------ACACAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................AGATTCCGGTCAGCAACAACAGCAA.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0

-9.7	-9.7	-9.3	-8.9

dsi_27181

2l:12195995-12196144 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads