ID:

dsi_27167

Coordinate:

3r:4499445-4499597 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-14.3	-14.3

Flybase annnotation

five_prime_UTR [3r_4499127_4499971_-]; exon [3r_4499127_4499971_-]

Repeatable elements

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

############################################################################################################################################################################################################################################################# GAGTCGAAACTAGGCTAAATATCTTTGCATACTTTTGGGAAAGTTGTGCGGTACACACACACACACACCCGTTCGTACACACACACACAGGACCTGCGCCTGCGGTCGCCGACTTTTGAACCTGTTTTCTGACCATTGACCATTGACCACCGACCGCCGTGCCGGCCGCCTCTTTTCACTTTTGGCAACGCGGACTGCAGCAGCCGCTGCAAAAAATGCAACTGTAAAGGAAGCAGTAAGAAAAGGAAAGGAT ********************************************************************************************************...............((((..((((....(((.(((.(((.........((((...)))).........)))....))))))..))))..)))).**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M023 head
..........................................................................................................CGCCGACTTTTGAACCTGT................................................................................................................................	19	0	1	3.00	3	3	0	0	0	0	0	0	0
....................................................................................................................TGAACCTGTTTTCTGACCATTGACC................................................................................................................	25	0	1	2.00	2	1	0	0	0	0	1	0	0
...............................................................................................................................................................................TCACTTTTGGCAACGCGGACTGCAGC....................................................	26	0	1	2.00	2	0	0	2	0	0	0	0	0
....................................................................................................................................................................................TTTGGCAACGCGGACTGCAGC....................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................TCTTTGCATACTTTTGGGAAA...................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................................AACCTGTTTTCTGACCATT....................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................................ACTTTTGAACCTGTTTTCTGACCA......................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................TTCACTTTTGGCAACGCGGACTGCAGC....................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................CGGACTGCAGCAGCCGCT.............................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
....................................................................................................TGCGGTCGCCGACTTTTGAACCTGT................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0
.....................................................................................................................GAACCTCTTTTCTGACCATTGACC................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0	0
............................ATACTTTTGGGAAAGTTGTGCGGTAC.......................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................TTCTGACCATTGACCATTGACCACCGACC..................................................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................................................................CGCCGACTTTTGAACCTGG................................................................................................................................	19	1	1	1.00	1	0	0	0	1	0	0	0	0
..............................................................................................................GACTTTTGAACCTGTTTTCTGACC.......................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................GACTTTTGAACCTGTTTTCT...........................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................CAACGCGGACTGCAGCAGCCGCTGC...........................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................CACACACACACAGGACCTGCGCCT........................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................CGTACACACACACACAGGACCTGCGCC.........................................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................TCACTTTTGGCAACGCGGACTGCA......................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................TTTCTGACCATTGACCATTGACC.........................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................TTCACTTTTGGCAACGCGGACTGCAG.....................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0
.............................................................................................................CGACTTTTGAACCTGTTTTCTGACC.......................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................CAACGCGGGCTGCAGCAGGCGCG.............................................	23	3	1	1.00	1	0	0	0	0	1	0	0	0
...........................................................................................................GCCGACTTTTGAACCTGTTTTCTGAC........................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................TTCTGACCATTGACCATTGACCACCGAC...................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................TGTGCATACTTTTGGGAAAGTTGTGC............................................................................................................................................................................................................	26	1	1	1.00	1	0	1	0	0	0	0	0	0
....................................................................................................................................................................................TTTGGCAACGCGGACTGCA......................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................TTTTCACTTTTGGCAACGCGGACTGC.......................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
...........................................................................TACACACACACACAGGACCTGC............................................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCAGCAGTCGCTTCAAAAAA.....................................	20	2	2	0.50	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................CGCCGTGCGGGCCGCCT..................................................................................	17	1	2	0.50	1	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................CAGCAGCCGCTGCAAA........................................	16	0	3	0.33	1	0	0	0	0	1	0	0	0
.................................................................................................................................................ACAACGGACCGCCGTGCTGGC.......................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

CTCAGCTTTGATCCGATTTATAGAAACGTATGAAAACCCTTTCAACACGCCATGTGTGTGTGTGTGTGGGCAAGCATGTGTGTGTGTGTCCTGGACGCGGACGCCAGCGGCTGAAAACTTGGACAAAAGACTGGTAACTGGTAACTGGTGGCTGGCGGCACGGCCGGCGGAGAAAAGTGAAAACCGTTGCGCCTGACGTCGTCGGCGACGTTTTTTACGTTGACATTTCCTTCGTCATTCTTTTCCTTTCCTA **************************************************...............((((..((((....(((.(((.(((.........((((...)))).........)))....))))))..))))..)))).********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR618934 dsim w501 ovaries
........................................................................................................CAGCGGCTGAAAACTTGGACAA...............................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................GATAACTGCTGCGCCTGACG.......................................................	20	3	7	0.29	2	0	2	0	0	0	0
.......................................................................................................CTAGCAGCTGAAATCTTGGA..................................................................................................................................	20	3	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................TCGCTGGCGGCACGG..........................................................................................	15	1	7	0.14	1	0	0	1	0	0	0
.........................................................................................................AGCAGCTGACATCTTGGAC.................................................................................................................................	19	3	9	0.11	1	0	1	0	0	0	0
......................GAAACAGATGTAAACCCTTTC..................................................................................................................................................................................................................	21	3	9	0.11	1	0	0	0	1	0	0
...........................................................................ATGTGTGTGTGTGTCCGGCACCC...........................................................................................................................................................	23	3	10	0.10	1	0	0	0	0	1	0
............................................................................TGTGTGTGTGTGTCC..................................................................................................................................................................	15	0	20	0.05	1	0	0	0	0	0	1
..............................................................................................................CTGACATCTTGGACAAA..............................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0

Generated: 04/24/2015 at 08:48 AM