ID:

dsi_27161

 Coordinate:

3l:11508457-11508606 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.6 -29.5 -29.5

Flybase annnotation

exon [3l_11508350_11508456_-]; CDS [3l_11508350_11508456_-]; intron [3l_11508457_11508775_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGTCCGTATGAACGTCGATATCTCGATAAATAAGAGAGCCAAAAATCCAAATCACACTTTGAATTTGGAATACAGTTATTAGGGCGTTTCATGTTCAAAGAAGTTAGAGAGGTTTGAGGTTAGAATTATCACTCTGTGTACATATTACATAGTTCTAGCACATTTGTTTATTGGAATTAGTAAATTCGACTATCTTTAGGGAGAATCTTGTGAGGACGACGTAAACGAGTGTTTCACCTTGGCCGGGAC
**************************************************.......((((((((.((((((...(((.....))))))))).))))))))...(((((((...((((.(((((((........(((((((.....))))))))))))))......((((((((....))))))))))))...)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
.........................................................................................................................................................................................................GAGAATCTTGTGAGGACGAC............................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATCTTGTGAGGACGACGTAAAC....................... 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGGAGAATCTTGTGAGGAC................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTTGTGAGGACGACGTAAAC....................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGAGGACGACGTCAA........................ 16 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATCTTGTGAGGACGACGTAAACGAGT................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAGGACGACGTAAACGAGT................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAAGGAGAATCTTGTGAGGACGAC............................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGGAGAATCTTGTGAGGACG............................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTAAACGAGTGTTTCACCTTGGC...... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................AGTTAGAGAGGTTTGAG................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................TTATCACTCTGGGCTCATATTA...................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATCTTGTGAGGACGACGTAAACGA..................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GAATCTTGTGAGGACGACGTAAACGA..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGGAGAATCTTGTGAGGACGAC............................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGAGGACGACGTAAACGAGT................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................GGAGAATCTTGTGAGGACGACGT........................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTGAGGACGACGTAAACGAGTGTTT............... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GGGGAATCTTGTGAGGACGAC............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGAATCTTGTGAGCACGAC............................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTTGTGAGGACGACGTAAACGAG.................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGAGAATCTTGTGAGGACGAC............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACGAGTTATTCACCTTGGCCGG... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................AGGAGAATCTTGTGAGGACGACGG........................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GTCTAACCTTGGCCGAGA. 18 3 20 0.60 12 0 0 0 0 0 0 0 0 1 2 9
..................................................................................................................................................................................................................................CGAGTCTATCACCTTGGCCGA... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.TGTCCGTATGAACGTCGAAATCTTTATA............................................................................................................................................................................................................................. 28 3 6 0.33 2 0 0 0 0 0 1 0 0 0 1 0
.................................................................................................................................................................................................................................ACGAGTTCTTCACCTTGGCCGA... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.TGTCCGTATGAACGTCGAAATCTTGATT............................................................................................................................................................................................................................. 28 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................CTATGTTTAGGGAGAA............................................ 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTTTATCACCTTGGCCGAGA. 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
..GTCCGTATGAACGTCGAAATCTCTATA............................................................................................................................................................................................................................. 27 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TATCACCTTGGCCGG... 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GTCTAACCTTGGCCGAGAC 19 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAGTTATTCACCTTGGC...... 17 2 19 0.11 2 0 0 0 0 0 2 0 0 0 0 0
...TCCGTATGAACGTCGATA..................................................................................................................................................................................................................................... 18 0 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0
TTGTCCGTATGAACGTCGA....................................................................................................................................................................................................................................... 19 0 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................TCTGAATTTGGCATACAATTA........................................................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
.TGTCCGTATGAACGTCGATATC................................................................................................................................................................................................................................... 22 0 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
...TCCGTATGAACGTCGATATCT.................................................................................................................................................................................................................................. 21 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
TTGTCCGTATGAACGT.......................................................................................................................................................................................................................................... 16 0 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................GAGTTCATCACCTTGGCCGG... 20 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TCACCTTGGCCGAGA. 15 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TATCACCTTGGCCGAGA. 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GTATTTGAGGTTAGAATTAT........................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................TTCCTGTTCAAAGAA................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................TCTGTTAATTGGAATGAGTA................................................................... 20 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..GTCCGTATGAACGTCGATA..................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.TGTCCGTATGAACGTCGATA..................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................TCACCTCGGCCGCGAC 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................GTTTAACCTTGGCCGAGAG 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.TGTCCGTATGAACGTCGATT..................................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...TCCGTATGAACGTCGAT...................................................................................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.TGTCCGTATGAACGTCGTTT..................................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................CGTCTATGGTTAGGGAGA............................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AACAGGCATACTTGCAGCTATAGAGCTATTTATTCTCTCGGTTTTTAGGTTTAGTGTGAAACTTAAACCTTATGTCAATAATCCCGCAAAGTACAAGTTTCTTCAATCTCTCCAAACTCCAATCTTAATAGTGAGACACATGTATAATGTATCAAGATCGTGTAAACAAATAACCTTAATCATTTAAGCTGATAGAAATCCCTCTTAGAACACTCCTGCTGCATTTGCTCACAAAGTGGAACCGGCCCTG
**************************************************.......((((((((.((((((...(((.....))))))))).))))))))...(((((((...((((.(((((((........(((((((.....))))))))))))))......((((((((....))))))))))))...)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................TAGAAGTCTCTTCAATCTC............................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................CCTGCTGCGTTTGCTCACAAA............... 21 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................AGAACGCTCCTGCTGCTTT......................... 19 2 3 0.33 1 0 0 1 0 0 0 0
..................................CTCTCGGTATTTAGGATTGGTG.................................................................................................................................................................................................. 22 3 10 0.10 1 0 0 0 1 0 0 0
...............................................................................................................................................ATGATGGATCAAGATCGA......................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0
.............................................................................................GAAGTCTCTTCAATCTCTG.......................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0
....GGCATACTTGCAGCTATAGAG................................................................................................................................................................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0 0
AACAGGCATACTTGCAGCTCTAGAGC................................................................................................................................................................................................................................ 26 1 14 0.07 1 0 0 0 0 1 0 0
........TACTTGCAGCTATAG................................................................................................................................................................................................................................... 15 0 15 0.07 1 0 0 0 0 0 1 0
................................................................................................................................................................................................................................TTGCTCAAAAAGTGG........... 15 1 18 0.06 1 0 0 1 0 0 0 0
..........................................TTTTAGGTTGAGTGT................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:23 AM