ID:

dsi_27133

 Coordinate:

3r:24440238-24440387 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.6 -2.1 -2.0

Flybase annnotation

CDS [3r_24438854_24440237_-]; exon [3r_24438101_24440237_-]; intron [3r_24440238_24441137_-]

Repeatable elements

NameClassFamilyStrand
(TGG)nSimple_repeatSimple_repeat+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTACAACAACCCCTCTGTGTTTTCTCGGGTATTTTTGTTGTTTTTACACCACCAACGCCACCACCACCACCACGTTTGTCAGTATTTTTAGCTGGGTTTATTGACCCGCTCTTGCGAGAGTTTAGGGAAGCAAAAGCAGCTCTCTTCCTCGATGCCGAACAGTTGACTAATCCTCCCCCTCTCTCTGTTTGCTCTTGCAGTAATAACACCAGCAGTTCGAGTAGCATCAACAAAATGAGTGGATCTCGTC
***************************************************************************************************************************************.(((((...(((.........))).))))).....................**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body
........................................................................................................................................................................AATCCTCCCCCTCTCTCT................................................................ 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCTCTGTTTGCTCTTGCAG.................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGCAGTTCGAGTAGCATCAACAAA................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCCCTCTCTCTGTTTGCTCTTGC.................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGAGTAGCATCAACAAAATGAGTGGA....... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CTCTCTGTTTGCTCTTGCAG.................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................GCAGCTCTCTTCCTCGATGC............................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGCAGTTCGAGTAGCATC...................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................CCAGCAGTTCGAGTAGCATCTAACA................. 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGTAATAACACCAGCAGTTCGAGT............................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GCAAAAGCAGCTCTCTTCCTCGATGC............................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........CCTCTGTGTTTTCTCGGGTAT.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................TCAGTAATAACACCAGCAGTTCGAG............................. 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCGAGTAGCATCAACAAAATGAGTGGA....... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TGTCAGTGTGGTTAGCTGGGTT........................................................................................................................................................ 22 3 5 0.40 2 0 0 0 0 0 0 0 0 1 0 1 0 0
..............................................................................TCGGAATTTTTAGCAGGGTTT....................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TCGGAATTTTTAGCAGGGTT........................................................................................................................................................ 20 3 10 0.20 2 0 0 1 0 0 0 0 0 0 0 0 1 0
.................TGTTTTGTCGGGGATTTTT...................................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................TGTGTCCTCTTGCAGTAAAAA............................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................TCTCTGGTATTCTTGTTG.................................................................................................................................................................................................................. 18 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGAAGTTCGTGTGGCATCAA.................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................GGGGAACAGTAGACTAATC.............................................................................. 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................TGGCAGTGTTTTTAGCTG............................................................................................................................................................ 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................TTTATCGGTATTTTTAGC.............................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AATGTTGTTGGGGAGACACAAAAGAGCCCATAAAAACAACAAAAATGTGGTGGTTGCGGTGGTGGTGGTGGTGCAAACAGTCATAAAAATCGACCCAAATAACTGGGCGAGAACGCTCTCAAATCCCTTCGTTTTCGTCGAGAGAAGGAGCTACGGCTTGTCAACTGATTAGGAGGGGGAGAGAGACAAACGAGAACGTCATTATTGTGGTCGTCAAGCTCATCGTAGTTGTTTTACTCACCTAGAGCAG
****************************************************************.(((((...(((.........))).))))).....................*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR1275483
Male prepupae		 SRR1275487
Male larvae
............................................ATAGGGTGGTTGCGGAGGTGG......................................................................................................................................................................................... 21 3 6 10.50 63 50 10 0 0 0 0 2 1 0 0
............................................ATAGGGTGGTTGCGGAGGTG.......................................................................................................................................................................................... 20 3 15 6.93 104 96 2 0 0 0 0 3 0 2 1
...................................................................GTGGTGCAAACAGTCATAAA................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................ATATGGTGGTTGCGGAGGTGG......................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................AAAAATGTGGTGGCTGCGGTG............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................GTTTTCTTCGAGAGAAGTA..................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.....................................................TTGCGGTGGTGGTGGTGGTGA................................................................................................................................................................................ 21 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0
..........................................AAATGTGGTGGCTGCGGTG............................................................................................................................................................................................. 19 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...........................................AATGTGGTGCTTGCG................................................................................................................................................................................................ 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.AGGATGTTGGGGTGACACAA..................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................TTTTGTCGAGAAAAGGAGC................................................................................................... 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................GAAGGAGCTACTGCTCGCCA....................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0
............................................ATGTGGTGGCTGCGCTGGTA.......................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.................................................GTGGTTGCTGAGGTGGTGGT..................................................................................................................................................................................... 20 2 14 0.14 2 0 0 2 0 0 0 0 0 0 0
............................................ATTGGGTGGTTGCGGAGGTGG......................................................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
....................................................TTTGCGGTGGTGGAGGTGGTG................................................................................................................................................................................. 21 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..........................................AAATGTGGTGGCTGCG................................................................................................................................................................................................ 16 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0
............................................ATGTGGTGGCTGCGGCAGTG.......................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TTCGTAGAGATAAGGAGCGA................................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0
............................................ATGTGGTGGCTGCGGCGATG.......................................................................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
............................................ATGTGGTGGCTGCGATGTTG.......................................................................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.........................................AGTATGTGGTGGCTGCGGTG............................................................................................................................................................................................. 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:24440188-24440437 - dsi_27133 TTACAA-----------------CAACCCCTCTGT----GT-----------TTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------C-----------------------G-TTTGTCAGTATTTTTAGCTG--GGTTTATTGACCCGCT----CTTGCGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TCTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAGC------ATCAACAA---AATGAGTGG---ATCTCGTC
droSec2 scaffold_4:3940577-3940826 - TTACAA-----------------CAACCCCTCTGT----AT-----------TTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------C-----------------------G-TTTGTCAGTATTTTTAGCTG--GGTTTATTGACCCGCT----CTTGCGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TGTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAGC------ATCAACAA---AATGAGTGG---ATCTCGTC
dm3 chr3R:25079634-25079884 - TTACAA-----------------CAACCCCTCTCT----GT---------ATTTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCAC------------------CA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTGCGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAGC------ATCAACAA---AATGAGTGG---ATCTCGTC
droEre2 scaffold_4820:2946207-2946461 + TTACAA-----------------CAACCCCTCTGT----GT-----------GTT----GT-CGTGTGTTCTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCATCACCACCA---------C---CACCA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTGGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAAC------ATCAACAA---AATGATTGG---ATCTCGTC
droYak3 3R:21411324-21411584 + TTACAA-----------------CAACCCCTCTGT----AT-----------TTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCATCACCACCA---------C---CACCA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGTGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CGCTCTTCC------------TC-TTGCTCGATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TCTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAAC------ATCAACAA---AATGAGTGG---ATCTCGCC
droEug1 scf7180000409787:492334-492589 + TTACAA---------------CACAACCCCTCTGT----GT----TTC--A--TT----TT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCGCCACCACCACCA---------------CCA---------------C-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTGGAGAGTTTA----------------------------------------GGGAAGCAGAAACCA----------------------G------------CTCTCTTTC------------TCA-------ATTCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTAT----C-----------TGCTCT-TTTTAGTAA------CACCAACAGTTCGAGTAAC------ATCAACAA---AATGAGTGG---ATCTCGTC
droBia1 scf7180000302136:3050542-3050805 + TTACAA-----------------CAACCCCTCTGTCTCCGT---------ACTTT----TT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------CCACCACCA---------------C-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGAGAGTTTA----------------------------------------GGGAAGCAGAAACCA----------------------G------------CCCTC----------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TCCAT----T-----------TGCCA--TTGCAGTAA------CACCAGCAGTTCCAGCAACAAAAACATCAACAA---AATGAGTGG---ATCTCGTC
droTak1 scf7180000415765:1134633-1134898 + TTACAA-----------------CAACCCCTCTGTCTGTGT---------ATTTT--TTTT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------------CCA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGAGAGTTTA----------------------------------------GGGAAGCAA-AACCA----------------------G------------CTCTCTTTC------------TCGTTTCTCGATTCCGA--ACAGTTGACTAATCCTCCCCCTCTCTTTTTAT----T-----------TGCTC--TTCCAGTAA------CACCAGCAACTCCAGTAAT------ATCAACAA---AATGAGTGG---ATCTCGTC
droEle1 scf7180000491280:1274473-1274726 - TTACAA-----------------CAACCCCTCTGT----AT---------ATTTT--TTTT-CGGTTATTCTTGTTGTT-----TTTAC--ACC---ACC---AACGCCGCCAGCACCACCA---------------CCA---------------C-TTTGCCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGAGAGTTTA----------------------------------------GGGAAGCAAGAAGCA----------------------G------------CTCTCTTTC------------TCG-------TTTCCAA--ACAGTTGACTAATCCTCCCCCTCTC--TTCAT----T-----------TGCTC--TTTCAGTAA------CACCAGCAGTTCCAGCAAT------ATCAACAA---AATGAGTGG---ATCTCGTC
droRho1 scf7180000779659:5288-5526 + TTACAA-----------------CAACCCCTCTGT----AT---------ATTTT----TT-CGGGTATTCTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCAC-------------------------------------TTCGTCAGTATTTTTAGCTG--GGTTTAATGACCGGC----------GAGAGTTTA----------------------------------------GGGAAGCAAAAACCA----------------------G------------CTCTCTTTC------------TCA-------TTTCCAA--ACAGTGTACTAATCCTCCCCCTCTC--TTTAT----------------TGCTC--TTTCAGTAA------CACCAGCAGTTCCAGTAAT------ATGAAAAA---AATGAGTGG---ATCGCGTC
droFic1 scf7180000453776:380697-380944 - TTACAA-----------------CAACCCCTCTGT----GT-----------TTTTTTTTTTGGGATAACTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCAC----------------------------------------TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTT-CGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTTC------------TCG-------ATTCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTGT----------------TGCTCTCTTGCAGTAA---TAACACCAGCGGTTCCAGTAAT------ATCAACAA---AATGAGTGG---ATCTCGCC
droKik1 scf7180000302466:384130-384390 + CAGCAG-----------------CAACCCCTCGTG-----A----CTCGTATTGT-----------TTTTGTTGTTGTC-----TTTAC--ACC---ACCACCAACGCCGCCGCCACCACCAAAAAAAATATTA---CCA--CTGCGCCCCGAGCC-TGTGCCTGTATTTTTAGCTG--GGTTTAATGACCCGCTCGCTCTCCCAGGGGTTTA----------------------------------------GGGAAGCAG-CCGCC----------------------G------------CTCTCTCT---------------------------GGA--ACCGCTGACTAATCCTCCCCTTATT--TTCTC----T-----------TCTCC--TTGCAGCAA---------------CTCCA---AT------AGCCACAA---GCTGACCGG---CACCCGTC
droAna3 scaffold_12911:4769316-4769514 - TTCTAA-----------------CAACCCCTGGCG----CT---------GGTTG-----T-----TGTTGTTGTTGTTGTTGCCTCAC--AACACCACC---A-TACCACCACCACCGC-----------------------------------C-GACGCCTGTATTTTTAGCCCG-AGTTTAATGACC-GCA--CTCTC--------------------------------------------------------------------------------------------------------------------------CGA-------ACTCCGA--ACTCCTGACTAATCCTCCCTCT-TC--TCTCT----C-----------TCTCC--TTGCAGCAA---T---------------------------AGCAACAA---AAACAGCGCCTCCTCGCGCC
droBip1 scf7180000396640:1600294-1600467 - TTACAA-----------------CAACCCCCGGG----------------------------------------TTG-C-----CCTAC--AGC---ACC---ACCACCACCACCACCGC------------------C------------------GACGCCTGTATTTTTAGCCCG-AGTTTAATGACCG-CA--CTCTC--------------------------------------------------------------------------------------------------------------------------CGA-------ACTCCGA--ACTCCTGACTAATCCTCCCTCTCTC--CTC-T----C-----------TCTCC--TTGCAGCAA---TAGC---------------AAC------A------AGAACAACACCTC---CTCGCGCC
dp5 2:1917245-1917514 - GTGAAAGGGGAGGGGGAGGAGCGCAACCCCTG------------------------------CGAGCGTTTTTGTTGTG-----TTTACACACC---ACC------ACCACCGTCGCCG------------------CCCGCCTGCGCTCC--TCCTGCTGCTGGTATTTTTAGCTGC-AGTTTAATGACCCGTT----C----CAGAATTTA----------------------------------------GGGAAGAAA-CAGAA----------------------GACCCCTCAACCGCTCTCTCTCTCTCTCTCTGTC----------TCTCTAAATGCAGCTGACTAATTC--CCGTTCTC--TTTCTTGCGC-----------TCTCT--TTATA---------------GCAATTCGAGCAAC------A--AACAC---AACA----------GCCGTC
droPer2 scaffold_7:2080902-2081158 - GGAGCG-----------------CAACCCCTG------------------------------CGAGCGTTTTTGTTGTG-----TTTACACACC---ACC------ACCACCACCACCGTCG---------C---CGCCCGCCTGCGCTCC--TCCTGCTGCTGGTATTTTTAGCTGC-AGTTTAATGACCCGTT----C----CAGAATTTA----------------------------------------GGGAAGAAA-CAGAA----------------------GACCCCTCAACCGCTCTCTCTC--TCTGTCTGTC----------TCTCTAAATGCAGCTGACTAATTC--CCGTTCTC--TTTCTTGCGC-----------TCTCT--TTATA---------------GCAATTCGAGCAAC------A--AACAC---AACA----------GCCGTC
droWil2 scf2_1100000004902:7836373-7836591 - ----------------------------------------------------------------------------------------C--ACC---ACC---AACACTAACACCACCGCCG---------------CC--------------------TGTGTATATTTTTAGCTG--GGTTTAATGACCCGCT----TCCAAAAGAGA-----------------GAAAAACAGGAAAAATACAAAAATTAGGGAAGCAA-AAACACAGAGCAGGGACGACGACGATGA------------CTCTT--T---------------------------CCA--GCAGTTGACTAATTCTCTCCTTCTC--TCTTT----C-----------TCCCA--TTGCAGCAA---TAAGATGAACAATGC------------------------------CTCCTCCACACGCC
droVir3 scaffold_12822:2368624-2368846 - dvi_2613 CGACG--------------------------CTGC----TTCTTCTTCTTCTTGT--TT-T-----TGTTGTTGTTG-T-----TTTAC--ACC---ACC---GACGCCGACGCCGCCGC--------------------------------------------ATATTTTTAGCTGCGGGTTTAATGACCCGC----------CGCAGTTTAGGCAGCA---CAACCAGCAGCA-------------------GGAAGCAT-A-------------------------------------------------------------------------CGAAATACAGTTGACTAATCCTCCTCCTCTC--TCGCT----CTCTCTCTCTCTCTCTC--TCGCAGCAATTTGAACAAAAACAGCTCCA------------------------------------GTCGCC
droMoj3 scaffold_6540:26488276-26488484 - TTC-----------------------------T------------------------------GCTTGTTGTTGTTTTT-----TCTAC--ACC---ACC---ACTGCCGCCACCGCCGC--------------------------------------------ATATTTTTAGCTGCGGGTTTAATGACCCGC----------CACAGTTTAGGCAGCAGCGCAACCAGCAGCA-------------------GGAAGCAA-ACG-------------------------------------------------------------------------AAATTCAGTTGACTAATCCTCCCCCTCTC--TCGCT----CTCTCTTCCTCCTGCCT--TTGTAGCAA---C---A---------TGAACAA------------CAA---AAACAACAG---CAGTCGCC
droGri2 scaffold_14624:3286885-3287001 - GCAT----------------------CT--TCCTT----AT---------GTTAG--TT-T-----TGTTGTTGTTGTT-----TGTAC--ACC---ACCACCAACGCTGCCGCCGTCGC--------------------------------------------ATATTTTTAGCTGGGAGTTTAATGACCC-------------ACAGTTTA----------------------------------------GGCAACCAG-CACCA----------------------G------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTACAA-----------------CAACCCCTCTGT----GT-----------TTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------C-----------------------G-TTTGTCAGTATTTTTAGCTG--GGTTTATTGACCCGCT----CTTGCGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TCTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAGC------ATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................AATCCTCCCCCTCTC--TCT................................................................................................1815.00500000500000000000
..............................................................................................................................................................................................................................................................................................................................................................................TC--TCTGT----T-----------TGCTC--TTGCAG.................................................................1912.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGAGTAGC------ATCAACAA---A...................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................CCCCTCTC--TCTGT----T-----------TGCTC--TTGC...................................................................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTAGC------ATCAACAA---AATGAGTGG---A.......2711.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................CTC--TCTGT----T-----------TGCTC--TTGCAG.................................................................2011.00100000000000100000
.........................................................................................................................................................................................................................................................................GCA----------------------G------------CTCTCTTCC------------TCG-------ATGC...................................................................................................................................2011.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGAGTAGC------ATC............................1811.00100000000100000000
..................................................................................................................................................................................................................................................................GCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGC...................................................................................................................................2611.00100000000000100000
............................CCTCTGT----GT-----------TTT----CT-CGGGTAT................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGTAGC------ATCAACAA---AATGAGTGG---A.......2811.00100000010000000000
droSec2
TTACAA-----------------CAACCCCTCTGT----AT-----------TTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------C-----------------------G-TTTGTCAGTATTTTTAGCTG--GGTTTATTGACCCGCT----CTTGCGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TGTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAGC------ATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGTTCGAGTAGC------ATCAACA........................2711.0011000
......................................................................................................................................................................................................................................................................................................................................................................TCCCCCTCTC--TGTGT----T-----------TGCTC--TTG....................................................................2411.0010010
....................................................................................................................................................................................................................................................................................................................TTCC------------TCG-------ATGCCGA--ACAGTTGA......................................................................................................................2211.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGTTCGAGTAGC------...............................1811.0010001
dm3
TTACAA-----------------CAACCCCTCTCT----GT---------ATTTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCAC------------------CA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTGCGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAGC------ATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................CCCCCTCTC--TTTGT----T-----------TGCTC--TTG....................................................................2319.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000002000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGTTCGAGTAGC------ATCAAC.........................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTAGC------ATCAACAA---AATGAGTGG---A.......2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGAGTAGC------ATCAAC.........................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTAGC------ATCAACAA---AATGAGTGG---ATC.....2915.0050000000000000000000000000000000000000000000000000000000000000000000000000000021110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCG.................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CCCTCTC--TTTGT----T-----------TGCTC--TTG....................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000001000100000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AA---TAACACCAGCAGTTCGAGTAGC------...............................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGTTCGAGTAGC------ATCAACAA---A...................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................AA---TAACACCAGCAGTTCGAGTAGC------ATC............................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAA---AATGAGTGG---ATCTCGTC2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGTTCGAGTAGC------ATCAACAA---AA..................3013.0030000000000000000000000000000000000000000000000000000000000000000000000000000010110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AA---TAACACCAGCAGTTCGAGT........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AA---TAACACCAGCAGTTCGAGTAGC------A..............................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCAGCAGTTCGAGTAGC------ATC............................2513.0030000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---AATGAGTGG---ATCTCGTC2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCCCCTCTC--TTTGT----T-----------TGCTC--TTG....................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAGC------ATCAACAA---AATGAGTGG---........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGC------ATCAACAA---AATGAGTGG---ATCTCGT.2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTTCGAGTAGC------ATCAACAA---AA..................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGC------ATCAACAA---AATGAGTGG---ATC.....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGTTCGAGTAGC------ATCAACA........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGTTCGAGTAGC------ATCAACAA---AA..................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCT..................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGTTCGAGTAGC------ATCAACAA---AA..................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CCCCTCTC--TTTGT----T-----------TGCTC--TTG....................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGTTCGAGTAGC------ATCAACAA---A...................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTCGAGTAGC------ATCAACAA---AATGA...............2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CCTCTC--TTTGT----T-----------TGCTC--TTGC...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGTTCGAGTAGC------ATC............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------.......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AGCAA-AAGCA----------------------G------------CTCTCTTCC------------.................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CCCCCTCTC--TTTGT----T-----------TGCTC--.......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACACCAGCAGTTCGAGTAGC------...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTGCGAGAGTTTA----------------------------------------GGGAAGCA................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................GGGAAGCAA-AAGCA----------------------G------------CTCT..................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTTCGAGTAGC------ATCAACA........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................A---TAACACCAGCAGTTCGAGTAGC------ATC............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GTAA---TAACACCAGCAGTTCGAGT........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................G-TTTGTCAGTATTTTTAGCTG--GGT...............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTAGC------ATCAACAA---AATGAGT.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCCCCTCTC--TTTGT----T-----------TGCTC--TTGCAG.................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................TCAGTATTTTTAGCTG--GGTTTA............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AGTTTA----------------------------------------GGGAAGCAA-AAG...........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTCGAGTAGC------ATCAACAA---AATGAG..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGTTCGAGTAGC------...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGTAA---TAACACCAGCAGT..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGC------ATCAACAA---AATGA...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------.......................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTAGC------ATCAACAA---AATGAGTGG---A.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACACCAGCAGTTCGAGTAGC------A..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAA---TAACACCAGCAGTTCGAGTAGC------A..............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GC------ATCAACAA---AATGAGTGG---ATCTCGTC2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................C------ATCAACAA---AATGAGTGG---........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAA---TAACACCAGCAGTTCGAGTAG......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CCCCCTCTC--TTTGT----T-----------TGCTC--TTGCA..................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CTTGCGAGAGTTTA----------------------------------------GGGAAGC.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A-AAGCA----------------------G------------CTCTCTTCC------------TCG-------A......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACACCAGCAGTTCGAGTAGC------ATCAAC.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGTTCGAGTAGC------ATCA...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--..............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------ATCAACAA---AATGAGTGG---ATCTCGTC2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCAA-AAGCA----------------------G------------CTCTCTTCC------------TC...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCAGCAGTTCGAGTAGC------AAA............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAGTTCGAGTAGC------ATCAACA........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGC------ATCAACAA---AATGAGTGG---ATCTCG..2711.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CCTCTC--TTTGT----T-----------TGCTC--TTG....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCAGCAGTTCGAGTAGC------...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGC------ATCAACAA---AATGAGTG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCGAGTAGC------ATCAACAA---AAT.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGTCAGTATTTTTAGCTG--TT................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
droEre2
TTACAA-----------------CAACCCCTCTGT----GT-----------GTT----GT-CGTGTGTTCTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCATCACCACCA---------C---CACCA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTGGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTCC------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAAC------ATCAACAA---AATGATTGG---ATCTCGTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTACAA-----------------CAACCCCTCTGT----AT-----------TTT----CT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCATCACCACCA---------C---CACCA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGTGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CGCTCTTCC------------TC-TTGCTCGATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TCTGT----T-----------TGCTC--TTGCAGTAA---TAACACCAGCAGTTCGAGTAAC------ATCAACAA---AATGAGTGG---ATCTCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGTAAC------ATCAACAA---AATGAGTGG---A.......2711.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................CCCCTCTC--TCTGT----T-----------TGCTC--TTG....................................................................2211.00100010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCAGCAGTTCGAGTAAC------ATCAAC.........................2811.00100100000000
..................................................................................................................................................................................................................................................................GCAA-AAGCA----------------------G------------CGCTCTTCC------------TC-TTGCTC........................................................................................................................................2711.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................CCCCTCTC--TCTGT----T-----------TGCTC--TTGC...................................................................2311.00100100000000
........................................................................................................................................................................................................................................................................AGCA----------------------G------------CGCTCTTCC------------TC-TTGCTCGA......................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................TCCCCCTCTC--TCTGT----T-----------TGCTC--TTGCA..................................................................2611.00100100000000
.....................................................................................................................................................................................................................................................................................................................TCC------------TC-TTGCTCGATGCCGA--..............................................................................................................................1911.00100100000000
droEug1
TTACAA---------------CACAACCCCTCTGT----GT----TTC--A--TT----TT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCGCCACCACCACCA---------------CCA---------------C-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTGGAGAGTTTA----------------------------------------GGGAAGCAGAAACCA----------------------G------------CTCTCTTTC------------TCA-------ATTCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTAT----C-----------TGCTCT-TTTTAGTAA------CACCAACAGTTCGAGTAAC------ATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotal
No Reads
droBia1
TTACAA-----------------CAACCCCTCTGTCTCCGT---------ACTTT----TT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------CCACCACCA---------------C-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGAGAGTTTA----------------------------------------GGGAAGCAGAAACCA----------------------G------------CCCTC----------------TCG-------ATGCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TCCAT----T-----------TGCCA--TTGCAGTAA------CACCAGCAGTTCCAGCAACAAAAACATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotal
No Reads
droTak1
TTACAA-----------------CAACCCCTCTGTCTGTGT---------ATTTT--TTTT-CGGGTATTTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCACCA---------------CCA---------------G-TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGAGAGTTTA----------------------------------------GGGAAGCAA-AACCA----------------------G------------CTCTCTTTC------------TCGTTTCTCGATTCCGA--ACAGTTGACTAATCCTCCCCCTCTCTTTTTAT----T-----------TGCTC--TTCCAGTAA------CACCAGCAACTCCAGTAAT------ATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotal
No Reads
droEle1
TTACAA-----------------CAACCCCTCTGT----AT---------ATTTT--TTTT-CGGTTATTCTTGTTGTT-----TTTAC--ACC---ACC---AACGCCGCCAGCACCACCA---------------CCA---------------C-TTTGCCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTTTCGAGAGTTTA----------------------------------------GGGAAGCAAGAAGCA----------------------G------------CTCTCTTTC------------TCG-------TTTCCAA--ACAGTTGACTAATCCTCCCCCTCTC--TTCAT----T-----------TGCTC--TTTCAGTAA------CACCAGCAGTTCCAGCAAT------ATCAACAA---AATGAGTGG---ATCTCGTCSizeHit CountTotal NormTotal
No Reads
droRho1
TTACAA-----------------CAACCCCTCTGT----AT---------ATTTT----TT-CGGGTATTCTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCACCAC-------------------------------------TTCGTCAGTATTTTTAGCTG--GGTTTAATGACCGGC----------GAGAGTTTA----------------------------------------GGGAAGCAAAAACCA----------------------G------------CTCTCTTTC------------TCA-------TTTCCAA--ACAGTGTACTAATCCTCCCCCTCTC--TTTAT----------------TGCTC--TTTCAGTAA------CACCAGCAGTTCCAGTAAT------ATGAAAAA---AATGAGTGG---ATCGCGTCSizeHit CountTotal NormTotal
No Reads
droFic1
TTACAA-----------------CAACCCCTCTGT----GT-----------TTTTTTTTTTGGGATAACTTTGTTGTT-----TTTAC--ACC---ACC---AACGCCACCACCAC----------------------------------------TTTGTCAGTATTTTTAGCTG--GGTTTAATGACCCGCT----CTT-CGAGAGTTTA----------------------------------------GGGAAGCAA-AAGCA----------------------G------------CTCTCTTTC------------TCG-------ATTCCGA--ACAGTTGACTAATCCTCCCCCTCTC--TTTGT----------------TGCTCTCTTGCAGTAA---TAACACCAGCGGTTCCAGTAAT------ATCAACAA---AATGAGTGG---ATCTCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
CAGCAG-----------------CAACCCCTCGTG-----A----CTCGTATTGT-----------TTTTGTTGTTGTC-----TTTAC--ACC---ACCACCAACGCCGCCGCCACCACCAAAAAAAATATTA---CCA--CTGCGCCCCGAGCC-TGTGCCTGTATTTTTAGCTG--GGTTTAATGACCCGCTCGCTCTCCCAGGGGTTTA----------------------------------------GGGAAGCAG-CCGCC----------------------G------------CTCTCTCT---------------------------GGA--ACCGCTGACTAATCCTCCCCTTATT--TTCTC----T-----------TCTCC--TTGCAGCAA---------------CTCCA---AT------AGCCACAA---GCTGACCGG---CACCCGTCSizeHit CountTotal NormTotal
No Reads
droAna3
TTCTAA-----------------CAACCCCTGGCG----CT---------GGTTG-----T-----TGTTGTTGTTGTTGTTGCCTCAC--AACACCACC---A-TACCACCACCACCGC-----------------------------------C-GACGCCTGTATTTTTAGCCCG-AGTTTAATGACC-GCA--CTCTC--------------------------------------------------------------------------------------------------------------------------CGA-------ACTCCGA--ACTCCTGACTAATCCTCCCTCT-TC--TCTCT----C-----------TCTCC--TTGCAGCAA---T---------------------------AGCAACAA---AAACAGCGCCTCCTCGCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTACAA-----------------CAACCCCCGGG----------------------------------------TTG-C-----CCTAC--AGC---ACC---ACCACCACCACCACCGC------------------C------------------GACGCCTGTATTTTTAGCCCG-AGTTTAATGACCG-CA--CTCTC--------------------------------------------------------------------------------------------------------------------------CGA-------ACTCCGA--ACTCCTGACTAATCCTCCCTCTCTC--CTC-T----C-----------TCTCC--TTGCAGCAA---TAGC---------------AAC------A------AGAACAACACCTC---CTCGCGCCSizeHit CountTotal NormTotal
No Reads
dp5
GTGAAAGGGGAGGGGGAGGAGCGCAACCCCTG------------------------------CGAGCGTTTTTGTTGTG-----TTTACACACC---ACC------ACCACCGTCGCCG------------------CCCGCCTGCGCTCC--TCCTGCTGCTGGTATTTTTAGCTGC-AGTTTAATGACCCGTT----C----CAGAATTTA----------------------------------------GGGAAGAAA-CAGAA----------------------GACCCCTCAACCGCTCTCTCTCTCTCTCTCTGTC----------TCTCTAAATGCAGCTGACTAATTC--CCGTTCTC--TTTCTTGCGC-----------TCTCT--TTATA---------------GCAATTCGAGCAAC------A--AACAC---AACA----------GCCGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................AACCCCTG------------------------------CGAGCGTTTTTGTTGTG-----TT...............................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
droPer2
GGAGCG-----------------CAACCCCTG------------------------------CGAGCGTTTTTGTTGTG-----TTTACACACC---ACC------ACCACCACCACCGTCG---------C---CGCCCGCCTGCGCTCC--TCCTGCTGCTGGTATTTTTAGCTGC-AGTTTAATGACCCGTT----C----CAGAATTTA----------------------------------------GGGAAGAAA-CAGAA----------------------GACCCCTCAACCGCTCTCTCTC--TCTGTCTGTC----------TCTCTAAATGCAGCTGACTAATTC--CCGTTCTC--TTTCTTGCGC-----------TCTCT--TTATA---------------GCAATTCGAGCAAC------A--AACAC---AACA----------GCCGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................ACCCCTCAACCGCTCTCTCTC--TCTGTCTG...................................................................................................................................................2911.001010000
droWil2
----------------------------------------------------------------------------------------C--ACC---ACC---AACACTAACACCACCGCCG---------------CC--------------------TGTGTATATTTTTAGCTG--GGTTTAATGACCCGCT----TCCAAAAGAGA-----------------GAAAAACAGGAAAAATACAAAAATTAGGGAAGCAA-AAACACAGAGCAGGGACGACGACGATGA------------CTCTT--T---------------------------CCA--GCAGTTGACTAATTCTCTCCTTCTC--TCTTT----C-----------TCCCA--TTGCAGCAA---TAAGATGAACAATGC------------------------------CTCCTCCACACGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................GGGACGACGACGATGA------------CTC...................................................................................................................................................................1911.00110000
droVir3
CGACG--------------------------CTGC----TTCTTCTTCTTCTTGT--TT-T-----TGTTGTTGTTG-T-----TTTAC--ACC---ACC---GACGCCGACGCCGCCGC--------------------------------------------ATATTTTTAGCTGCGGGTTTAATGACCCGC----------CGCAGTTTAGGCAGCA---CAACCAGCAGCA-------------------GGAAGCAT-A-------------------------------------------------------------------------CGAAATACAGTTGACTAATCCTCCTCCTCTC--TCGCT----CTCTCTCTCTCTCTCTC--TCGCAGCAATTTGAACAAAAACAGCTCCA------------------------------------GTCGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................T-A-------------------------------------------------------------------------CGAAATACAGTTGACTAATCCTCC............................................................................................................2611.001000000000000000000000000000000000000000000000000100000000000000
................................TGC----TTCTTCTTCTTCTTGT--TT-T-----...................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAACAAAAACAGCTCCA------------------------------------GTCGCC2611.001000000000000000000000000000000000000100000000000000000000000000
......................................................T--TT-T-----TGTTGTTGTTG-T-----TTTA.............................................................................................................................................................................................................................................................................................................................................................................................2060.171000000000000000000000000000000010000000000000000000000000000000
................................................TTCTTGT--TT-T-----TGTTGTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................20180.112000000200000000000000000000000000000000000000000000000000000000
................................................TTCTTGT--TT-T-----TGTTGTTGTTG-.......................................................................................................................................................................................................................................................................................................................................................................................................21140.071000000000000000000000000010000000000000000000000000000000000000
droMoj3
TTC-----------------------------T------------------------------GCTTGTTGTTGTTTTT-----TCTAC--ACC---ACC---ACTGCCGCCACCGCCGC--------------------------------------------ATATTTTTAGCTGCGGGTTTAATGACCCGC----------CACAGTTTAGGCAGCAGCGCAACCAGCAGCA-------------------GGAAGCAA-ACG-------------------------------------------------------------------------AAATTCAGTTGACTAATCCTCCCCCTCTC--TCGCT----CTCTCTTCCTCCTGCCT--TTGTAGCAA---C---A---------TGAACAA------------CAA---AAACAACAG---CAGTCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................AGCAGCA-------------------GGAAGCAA-ACG-------------------------------------------------------------------------..................................................................................................................................1811.001010000
.......................................................................................................................................................................................................................CAGCAGCGCAACCAGCAGCA-------------------GGAAGCA................................................................................................................................................................................................................2711.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................TCCTCCTGCCT--TTGTAGA................................................................1811.001100000
.....................................................................................................................................................................................................................................GCAGCA-------------------GGAAGCAA-ACG-------------------------------------------------------------------------AAATTC............................................................................................................................2311.001000010
droGri2
GCAT----------------------CT--TCCTT----AT---------GTTAG--TT-T-----TGTTGTTGTTGTT-----TGTAC--ACC---ACCACCAACGCTGCCGCCGTCGC--------------------------------------------ATATTTTTAGCTGGGAGTTTAATGACCC-------------ACAGTTTA----------------------------------------GGCAACCAG-CACCA----------------------G------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:00 AM