ID:

dsi_27122

 Coordinate:

3l:7238131-7238324 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.4 -11.3 -11.1

Flybase annnotation

CDS [3l_7238074_7238130_+]; exon [3l_7237972_7238130_+]; CDS [3l_7238325_7238448_+]; exon [3l_7238325_7238448_+]; intron [3l_7238131_7238324_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCCAAGCCGCTGCTGCACGACCATCTTATAACGATCCGAGTAAAGAAGGTGGGTCCATATCAGTAGTTTATATCCACAAACTAGCCAGCTGCCCGATAGCCGGTAAATTCCCATGAAAGCAGCCCAAAAAAAAAAAAAACACAAAAACCCTTCGCAGGGCGGCGAATTTGGGCAAGGGAAAACAAGGTTAGGTCGCAGGCTACCCGCATTGTGTGCTAATTGCGCTCTACTTTCGATTTCAGTATCTGGAGGAGCACATCGGGGAAACCTACCTGGATGTGAAGCAGATGAC
*************************************************************************************************************************************************************************************....(((((.(((.((((((((((.......))).)))...)))).)))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR1275487
Male larvae		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 O001
Testis
 M025
embryo
 SRR1275483
Male prepupae		 SRR902009
testis
 SRR1275485
Male prepupae
............................................................................................................................................................CAGAGCGGAGAATTTGGACAA..................................................................................................................... 21 3 6 17.67 106 1 74 2 0 12 9 0 0 0 3 0 3 1 0 1
.............................................................................................................................................................................................................................................ATCTCAGTACCTGGAGGA....................................... 18 2 2 10.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAAAAAAA.......................................................................................................................................................... 27 3 1 5.00 5 4 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAAAAAA........................................................................................................................................................... 26 3 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAA............................................................................................................................................................... 22 3 4 4.00 16 4 0 4 2 0 0 4 2 0 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAAA.............................................................................................................................................................. 23 3 3 3.00 9 3 0 3 2 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAAAAAAAA......................................................................................................................................................... 28 3 1 3.00 3 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAAAAA............................................................................................................................................................ 25 3 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TATGAACGGAGCCCAAAAAAAAAA............................................................................................................................................................. 24 3 2 2.00 4 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAA............................................................................................................................................................... 20 2 4 2.00 8 3 0 4 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAA................................................................................................................................................................ 19 2 9 1.89 17 4 0 4 8 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGAGCGGAGAATTTGGACAA..................................................................................................................... 20 3 20 1.70 34 0 13 4 1 6 5 0 0 0 4 0 0 1 0 0
.............................................................................................................................................................................................................................................ATCTCAGTACCTGGAGGAGGA.................................... 21 3 4 1.50 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAAA.............................................................................................................................................................. 21 2 4 1.25 5 2 0 0 2 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................CATCTCAGTACCTGGAGGA....................................... 19 3 10 1.10 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCTTATAACGATCCGAGTAAAGAAGTA.................................................................................................................................................................................................................................................. 27 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAAAAAAA.......................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........CGCTGCTGCACGACC.............................................................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCTCTACTTTCGATTTCAG.................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAACAAGGTTAGGTCGCAGGC............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGAGCGGCGAATTTGGACAAA.................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAAAAAAAAAA....................................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGAGCGGCGAATTTGGACA...................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAAAAAA........................................................................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACTAGCCAGCTGCCCGAT................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAAAA............................................................................................................................................................. 22 2 3 1.00 3 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATTTCAGTACCTGGAGGA....................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAAGCCGCTGCTGCACGACCATCTTA........................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................AAGGTTAGGTCGCGG.............................................................................................. 15 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATCTCAGTACCTGGAGGAG...................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAAAAAAAGAA........................................................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TTTCAGTACCTGGAGGA....................................... 17 1 4 0.75 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTCAGTACCTGGAGGAG...................................... 18 2 6 0.67 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTCAGTATCTGGAGGAGGA.................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................CATCTCAGTATCTGGAGGAGG..................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAAATAAAAAAAAA......................................................................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATTTCAGTACCTGGAGGAGGA.................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTCAGTATCTGGAGGAGGAG................................... 21 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATCTCAGTACCTGGAGG........................................ 17 2 8 0.38 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGGGCGGAGAATTTGGACA...................................................................................................................... 20 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CCATCTCAGTACCTGGAGGA....................................... 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAACGGAGCCCAAATAAAAA.............................................................................................................................................................. 21 3 11 0.27 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATTTCAGTACCTGGAG......................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATCTCAGTACCTGGAGGAGG..................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................CTCAGTATCTGGAGGA....................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGAGCGGAGAATTTGGACAAG.................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AAGCAGCCCAAAAAA................................................................................................................................................................. 15 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CTCAGAGCGGCGAATTTG.......................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................ATTTCAGTACCTGTAGGA....................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAGGTCGCCGGCTAC......................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................ACTTACCTGGATGTGA.......... 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................CATCTCAGTATCTGGAGGAA...................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAAAAAAAAAAACACAAAAA................................................................................................................................................. 22 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................AGCGGAGAATTTGGGCAA..................................................................................................................... 18 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTCAGTAGCTGGAGGA....................................... 17 2 13 0.15 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCTTCGGAGGGCGGC................................................................................................................................. 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGCGCGGAGAATTTGGACAA..................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CCCATGGTAGCAGCCCA...................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GGTAAGGTCGCAGTCTAC......................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCTAAGTATCTGGAGGA....................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CAGCGCGGAGAATTTGGACA...................................................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATCTAAGTATCTGGAGG........................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATTTCAGTACCTGGA.......................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTTCGGTCGCAGTCTACT........................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AGCCAGCTGCTCGATCGAC............................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAAAAAAAAAACACAAAAA................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................CAAAAAAAAGAAAAACACA..................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................ATTTCAGTACCCGGAGGAA...................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................AGGATGTGAAGCAGA.... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTCGGTTCGGCGACGACGTGCTGGTAGAATATTGCTAGGCTCATTTCTTCCACCCAGGTATAGTCATCAAATATAGGTGTTTGATCGGTCGACGGGCTATCGGCCATTTAAGGGTACTTTCGTCGGGTTTTTTTTTTTTTTGTGTTTTTGGGAAGCGTCCCGCCGCTTAAACCCGTTCCCTTTTGTTCCAATCCAGCGTCCGATGGGCGTAACACACGATTAACGCGAGATGAAAGCTAAAGTCATAGACCTCCTCGTGTAGCCCCTTTGGATGGACCTACACTTCGTCTACTG
**************************************************....(((((.(((.((((((((((.......))).)))...)))).)))))))).........************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
........GGAGACGACGTGCTGGCAG........................................................................................................................................................................................................................................................................... 19 2 2 2.50 5 5 0 0 0 0 0 0
...........................................................................................................TTAAGGGTACTTTCGTCGGGTTTTT.................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
......................................................CAGGTATAGTCATCAAATATA........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.......GGGAGACGACGTGCTGGCAG........................................................................................................................................................................................................................................................................... 20 3 9 0.67 6 6 0 0 0 0 0 0
.........GAGACGACGTGCTGGCAG........................................................................................................................................................................................................................................................................... 18 2 4 0.50 2 2 0 0 0 0 0 0
...........................................................................GGTTTTTGATAGCTCGACGGG...................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................TGAATGGACCTACACT.......... 16 1 5 0.20 1 0 0 0 0 1 0 0
........GGAGACGACGTGCTGGC............................................................................................................................................................................................................................................................................. 17 2 8 0.13 1 1 0 0 0 0 0 0
........GGAGACGACGTGCTGGCAGC.......................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GCTAAAGTCCTAGAC............................................ 15 1 17 0.12 2 0 2 0 0 0 0 0
...................................................ACCGAGGTGTAGTCGTCAAAT.............................................................................................................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................GACCTCCTCGTGCGGCCC............................. 18 2 10 0.10 1 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................AAGGCTAAAGTCCTAGAC............................................ 18 2 12 0.08 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 12:36 AM