ID:

dsi_27119

 Coordinate:

3l:8086606-8086755 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_8086756_8087034_-]; exon [3l_8086756_8087069_-]; intron [3l_8085703_8086755_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGATTTCGGGTGCCGCGGAGCCATCAGCCTGACCAAGGCCACCATTAAGGTAGGACGCCCGAAAAGAGAGAGGGTGGGGCTGGGAGGTGGGAGCTGGGAGCTGGGAGCTCCTCCACCAAGTGCTTTCAATTGGACTAATAAAAAAGTAATGGGCGTGAGTGTGTGCGCATGTGTTTGCGACACATTAACCAACGATGACCACGACCTGAGGTCTCCGTTTCCATTCCCAAGCCAATACACCCATTCCCA
**************************************************((.(((((((((....(((((..(((((((((..........))))(((((((...)))))))))))).....)))))......(((........)))..))))))).(((((((.((((......)))))))))))..)).))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................................................................................................GAGGTCTCCGGTTCGATTC....................... 19 2 6 2.83 17 11 1 0 5 0 0 0 0 0
................................................................................................................................................................................................................GAGGTCTCCGGTTCGATTCC...................... 20 2 4 1.25 5 1 0 3 0 1 0 0 0 0
..............CGCGGAGCCATCAGCCTGACC....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................ATGGGCGGGAGTGTTTGCGTA................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...................................................................................................AGCTGGGAGCTCGCCCCCCA................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCCAACGACCAGAGGTCTCC................................. 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0
............................................................................GGGGCTGGGAGGTGGGAA............................................................................................................................................................ 18 1 5 0.20 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GAGGTCTCCGTTTCGATTCCGG.................... 22 3 5 0.20 1 0 0 1 0 0 0 0 0 0
...............................................AAGGGAGTACGCCCGAA.......................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................CGAAGACCACGACCT.......................................... 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................GAGGTCACCGGTTCGATTC....................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GAGGTCTCCGGTTCGATT........................ 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0
............................................................................................................................TATCAATTGGACTAAGAAAC.......................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................GAGGTCACCGGTTCGATTCC...................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0
..................................CAAGCCCACCGTTAAGG....................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCCTAAAGCCCACGGCGCCTCGGTAGTCGGACTGGTTCCGGTGGTAATTCCATCCTGCGGGCTTTTCTCTCTCCCACCCCGACCCTCCACCCTCGACCCTCGACCCTCGAGGAGGTGGTTCACGAAAGTTAACCTGATTATTTTTTCATTACCCGCACTCACACACGCGTACACAAACGCTGTGTAATTGGTTGCTACTGGTGCTGGACTCCAGAGGCAAAGGTAAGGGTTCGGTTATGTGGGTAAGGGT
**************************************************((.(((((((((....(((((..(((((((((..........))))(((((((...)))))))))))).....)))))......(((........)))..))))))).(((((((.((((......)))))))))))..)).))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................CACGCAAGTTAACCTGA................................................................................................................. 17 1 1 2.00 2 2 0 0 0 0 0
...........................................................................ACCCCGACCCTCCACCCT............................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................GCTGGACTCCAGGGGCCAAGGT.......................... 22 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................................CACGCAAGTTAACCTGAG................................................................................................................ 18 2 2 1.00 2 2 0 0 0 0 0
..........................................................................................................................................................................................................GCTGGACTCCAGGGGCCAGGGT.......................... 22 3 1 1.00 1 0 1 0 0 0 0
........................................................................................................................CACGCAAGTTAACCTG.................................................................................................................. 16 1 3 1.00 3 3 0 0 0 0 0
.........................................................................................................................ACGCAAGTTAACCTGA................................................................................................................. 16 1 6 0.50 3 3 0 0 0 0 0
........................AGTCGGAATGGTTCC................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 1 0 0
.........................................................................................................................ACGCAAGTTAACCTG.................................................................................................................. 15 1 19 0.21 4 4 0 0 0 0 0
..............................ACTGGTTCCGGTAGTGATG......................................................................................................................................................................................................... 19 3 20 0.20 4 0 0 0 0 4 0
.........................................................................................................................ACGCAAGTTAACCTGATC............................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0
..................................GTTCCGGTAGTAATTGCA...................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 1 0
.......................GAGTCGGAATGGTTC.................................................................................................................................................................................................................... 15 2 20 0.10 2 0 0 0 2 0 0
.........................................................................................................................................................................................................................TAAAGGTAAGTGTTCGGTT.............. 19 2 12 0.08 1 0 0 0 0 0 1
..........................................................................................................................CGCAAGTTAACCTGA................................................................................................................. 15 1 16 0.06 1 1 0 0 0 0 0
................................TGGTTCCGGTAGTAA........................................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0
...................................................ACCCCGCGGGCTTTTCT...................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
................................................................................................................AGGTAGTTCACGAGAATTA....................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
.............GGCGCCTAGGCAGTC.............................................................................................................................................................................................................................. 15 2 20 0.05 1 0 1 0 0 0 0

Generated: 04/24/2015 at 10:39 AM