dsi_27112

########################################################################################################################################################################################################################################################## GCAGCAGCATCTGCAGCATCAGAAGCATCAGCAGCAGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAGAACAAGCAACAGCAAAAACAGCAGCAACCACATAGCACTAGACATCAAAACTGTTGTCACATAATCGACATGGATGGCGATAGCACCACCAGCACCACCACCGCCTCGGCGGCCACTGGAACAACACTCAATTGCAATGTCCTATATGATTACGGAGCGGAGGAGGAGGATGACGAC ************************************************((...((((.........(((.......(((((((...........((.........))..............))))))).......)))...(((.(((........)))))).........((((....))))....))))...))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body
........................................................................................................................................................................................................................ATATGATTACGGAGCGGAG...............	19	0	1	1.00	1	0	0	1	0	0	0	0
.............................................GAAACGTAAGTCCAACCACA.........................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................ATTACTAAGCGGAGGA.............	16	2	20	0.85	17	17	0	0	0	0	0	0
.........................................................................................................................................................TAGGATCACCAGGACCACCACCG..........................................................................	23	3	2	0.50	1	0	1	0	0	0	0	0
..................................................................................................................................CACATAATGGACACGGATGA....................................................................................................	20	3	10	0.50	5	5	0	0	0	0	0	0
......................................................GTCCAACGACAAGACGA...................................................................................................................................................................................	17	1	2	0.50	1	0	0	0	0	1	0	0
..................................................................................................................................CACATAATGGACACGGATGAC...................................................................................................	21	3	6	0.33	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................AACTCTCAACTGCAATGTC....................................	19	2	3	0.33	1	0	0	0	0	0	1	0
..........................................................................................................................................................................CGACCGCCTCGGCGG.................................................................	15	1	8	0.25	2	0	2	0	0	0	0	0
..................................................................................................................................CACATAATGGACACGGATG.....................................................................................................	19	2	4	0.25	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GAGGAGGAGGATGACGAC	18	0	5	0.20	1	0	0	0	0	0	0	1
............................................AGAAGCGGAAGTTCAACCAC..........................................................................................................................................................................................	20	3	10	0.20	2	0	2	0	0	0	0	0
..............................................................................................................................................................................CGCCTCGTCGACCATTGGA.........................................................	19	3	10	0.10	1	1	0	0	0	0	0	0
....................................................AAGTCCAACCACGGGA......................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0
.............................................................................................................................................................ACCACCAGCACCACCA.............................................................................	16	0	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................GGCGGCCACTGGACC.......................................................	15	1	20	0.05	1	0	0	0	0	1	0	0

CGTCGTCGTAGACGTCGTAGTCTTCGTAGTCGTCGTCCTCGGTCTCTTTGCATTCAGGTTGGTGTTCTGCTTCTTGTTCGTTGTCGTTTTTGTCGTCGTTGGTGTATCGTGATCTGTAGTTTTGACAACAGTGTATTAGCTGTACCTACCGCTATCGTGGTGGTCGTGGTGGTGGCGGAGCCGCCGGTGACCTTGTTGTGAGTTAACGTTACAGGATATACTAATGCCTCGCCTCCTCCTCCTACTGCTG ************************************************((...((((.........(((.......(((((((...........((.........))..............))))))).......)))...(((.(((........)))))).........((((....))))....))))...))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo
.................................................................................................................................AGTGTATTACCTGTGCCTACT....................................................................................................	21	3	1	1.00	1	1	0	0
....................................................................................................GGATTATCGTGAACTGTAGT..................................................................................................................................	20	3	7	0.29	2	2	0	0
......................TTCGTAGCCGGCGGCCTCGG................................................................................................................................................................................................................	20	3	11	0.18	2	0	2	0
.........................................................................................................................................................................................................TCTAATGTTACAGGATATAC.............................	20	3	8	0.13	1	0	0	1
.....................CTTCGTAGCCGGCGGCCTCG.................................................................................................................................................................................................................	20	3	20	0.05	1	0	1	0
....................................................................................................GGTGTAGCGTGATTTGT.....................................................................................................................................	17	2	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	x:10555496-10555745 -	dsi_27112	GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAGCAGC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTCAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAGGAG--GA---------GGA---TG-ACGAC
droSec2	scaffold_15:1809406-1809646 -		GCAGCAGC-ATCTGCAG---------------------CATCAG---------CAGC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCCC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTTAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAGGAG--GA---------GGA---TG-ACGAC
dm3	chrX:11118822-11119071 -		GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAGCAGC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------AAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTCAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGCGGAG--GA---------GGA---TG-ACGAC
droEre2	scaffold_4690:4024407-4024653 +		GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAG---C--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTCAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAGCAG--GA---------GGA---TG-ACGAG
droYak3	X:11021303-11021552 +		GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAG---C--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTGCAATAATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGTCGGT--GA---------GGA---TG-ACGGG
droEug1	scf7180000409631:248105-248357 -		GCAGCAGC-GTCAGCAA---------------------CATGTGCAACATCAGCATC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA---------------A---------------------------------------------CA-----------GCAACAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCATATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------AAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTGCA---ATGTCCT-------------------------AA-------------------------------------ATGCTTACG---GT------------GA--------------------------GGAGGAG--GA---------GGA---CG-AGGAT
droBia1	scf7180000301345:721454-721706 +		GCAGCCAC-GTCAGCAT---------------------CTGCAG---CATCAGCAGG--------------------AGCAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA---------------CCA---------------------------GCAACA--------------------------GAAACAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACCGGAACCA---CACTCAATTGCA---ATGTCCT-------------------------GG-------------------------------------ATGAATACG---AG------------CG--------------------------GGAGCGG--GA---------GCA---GG-AGCAG
droTak1	scf7180000415210:26781-27024 +		GCAGCATC-ATCAGCAC---------------------CACCAGCACCATCAGCACCACCAGC--------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAGAA---------------------------------------------GCAACAAGAGAAGCAACA-----------GCAACAGCAACCACATAGCACTAGACACCAAA---------ACTGTTGTCACATCA---TCGACATGGATGGCGAT---AGCACCGC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTTGA---AT------------------------------------------------------------------------------------------------------------------------------------------------GA---AG-ACAAT
droEle1	scf7180000491193:621537-621843 +		GCAGCAAC-ACCACCAGCAACACCAGCAACACCAGCAACATCAGCAACATCAGCAACG-----TCGGCACAACCAGCAGGAGCCAGATAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGTGGCCACTGGAACCA---CACTCAATTGCA---ATGTCCTGGGCCGTAAGCC-------------CA-------------------------------------ATTATTACG---AT------------GT--------------------------GGATGAG--GATGATGAGGAGGA---GG-ATGTG
droRho1	scf7180000779986:98183-98480 -		GCAGCAAC-ACCAGCAA---------------------CATCAGCAACATCGGCAACACCAGC--------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTGCA---ATGTCCTGGGCCGCAAAGCCCATCC-------CG-------------------------------------ATGAGTACG---AT------------GA--------TGCGGAGGAGTACGAGCAGGA---G--GAGCAGGAGGAGGA---GG-ACGGG
droFic1	scf7180000453882:1089056-1089383 -		GCAGCAAC-ACCAGAAGCAGCAAAAGCAA---------AAGCAGCAACATCATCAGC--------------------AGGAGCAAGATAAACGTAAGTCCAACCACAAGACGAAGACGAACAAGCAACAGCAACA---------------------------------------------GCAACA------GCAACA-----GCAAACACAGCAGCAACCACATAGCACTAGACATCGAA---------ACTGTTGTCATATAA---TCGACATGGACGGCGAC---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACCGGAACCA---CACTCAATTGCA---ATGTTCTGGGCAGGAGTGCCC-----------AT------------------------------CGACGCGGTGACTACG---GTGAAGTGGATCAGGCGGAGGAGGAGGC--------------GGAGGAT--GA---------GGA---TG-GGGAG
droKik1	scf7180000302644:135755-136052 +		ACACCAGC-ACCAGCAG---------------------CAGCAAC---ATCTGCAGTACCAAC--------------TGGATACAGATAAAAGTAAGTCCAAGCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACAGCAGA---------AGTGTTGTCACATAA---TCGACATGGACGGCGGTGAGAGCTCCAC---------------------------------------CACCACGACCACCAC--------ATCAGCGGCCACGAGCACCA---CTCTGAACTGCA---ATGTCCGGAACGGGCAACCGA----GCTCCCA-------------------------------TC-ACCCGCTTCCC--G---AG---GAGGCGGACGAGTACGA-----------------CGAGGAGGAG--GA---------GGA---CG-ACGAC
droAna3	scaffold_13337:7363288-7363531 +		GCAGCAGC-AACAGCAA---------------------CAACAACAGCAGCAGCAGC--------------------AGCCACCCAACATGCATCATCATCATCAGCAGCAGCAG---CATCAACAACATCAACA---------------GCAGCAGCAGCAGCATCAGCAACATCAACAGCAGCA------GCAACA-----ACAGCAGCAGCAGCAGCAACATA-----------------------------------------------------TGCAAC---AGCAGCAG---------------------------------------CAGCAACA--ACAAC--------AGCAGCAGCAGCAGCAACAT---CCCAGCATTGGA---ATGTTT-------------------------------------------------------------------------G---AT------------GC--------------------------CAACGAG--GT---------GAA---CG-ATGTC
droBip1	scf7180000396429:321366-321685 +		GCTCCCAGAATCCACGA------------------------CAGGATCATCATCTCA--------------------AGGATCCAGAAAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAACAACA---------------------------------------------GCAACAAAAACAACAACA-----------GCAACAGCAACAAGTTAG-----------AAA----AGCCCGATGCTGCCACATGACTCTGGAAATGGACGGGGATGAGAGCACCAC------CACTGGCACAACCACA---ACAACCACCACAACCAGCACCACCAGCGG--------C--------A-------CCT---CGGCGGCCACCG---GAACCAC-------------------------CGGAATACTCGACTGTAAGCTGCTCAACAAG-CGGAGTAATCTCTACA---AA---GGA------TA--------------------------CAAGGAC--GA---------GTA---CG-ACGAT
dp5	XL_group1e:3310095-3310393 +		GTCGCAGC---CAG------------------------------CAGCAACGACAGC--------------------AGGAGCCAGAGAAACGTAAGTCAAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAACAGCAACAACATAGCACTAGACAGCAAGCGGCAGCCATAGGCTGCCACATCA---TCGACATGGACGGTGGC---AGCGGCGGCAGCACCAC------------------------------A---CCCACAACAAC--------ATCAGCGGCAACGGCCAGCA---CAATGAACTGCA---ACATCCACCACCACCAGCAGC----ACCACCA-------------------------------CC------ACCACCACGAAGAG---GAGTACGATGAGTACGA--------------------TGATGAG--GA------GGATGACAAAA-CTGAC
droPer2	scaffold_0:634936-635215 +		GCAGCAAC-AACAGCAG---------------------CAGCAGGTGCAGCAGCAAC--------------------ATCAGCAACAGCAACATCAGCAGCAACAGCAGCAGCAA---CAGCAGCAGCAGCAACA------------ACAGCAGCAGCA------------GCA------------ACATCAGCAACAGCAAC-----ATCAGCAGCAAC-----AGCAGCAGCA---------------------------------GCAACAACAGCAGCAGC---AGCAACAT--------------------------C------------AGCAACAGCAACAGC--------AACAACAGCAGCTGCAGCCC---CCCCCAAGA---------CCCC-------------------------CA--ATGACGCTCAGTGACATAT----------------TCAACAGCC---TG------------GC--------------------------GGAGGAA--GAGTCTGCAGTGGC---GC-ACAAC
droWil2	scf2_1100000004949:1100833-1101045 +		GCAGCAGC-AGCAGCAG---------------------CAGCAGCAGCAGCAGCAGC--------------------AGCAGCAGCAGCAAC--AACAACAACAACAACAACAAC---AA----CAACAACAACA------------ACAACAACAACA-----------------------------------------------------ACAACAACAAC-----------------A---------ACAACAACAACATCA---GCAACAGCAACAGCAAC---AACAACAA-----------CAGCAGCAGCAGCAGC------------AGCAACAACAACAAC--------AACAACAGCAGCAACAACAA---CAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------AA---TG-ACAGT
droVir3	scaffold_12875:20113054-20113303 +		GCAGCAGC-ATCATCAG---------------------CATATGCAACAACAACAGC--------------------AGCAGCATCAACAGC--AACAACAACAGCAGCA-------------TCAACAGCAACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCAGCAACAACA---------ACAGCAGCAGCAACA---ACAACAACAACAACAAC---AACAGCAG---------------------------------------CAGCAGCAACAGAAGCTTAAGCAATCGCAGGCAGCCAGCGCCG---CGGCCAATAACA---AAGCCAC-------------------------CA-----------------------------AC------CTGACCAAG---GA------------GT--------CGCC--------------CAAGCAA--AA---------GGG---CG-CCAGC
droMoj3	scaffold_6540:5250576-5250828 +		GCAGCAAC-AACAGCAG---------------------CAACAGCATCAGCAGCAGC--------------------AGCAGCAACAACAACAACAGCAACAGCAGCAGCAGCAG---CTACAACAACAGCAACA---------------G---------CAGCAACAACAACAGCAT----------------------------------------------TAGCAGCAG---CAACA---------ACAGCAGCAACAGCA---TCAGCAGCAGCAGCAAC---AACAACAA---------------------------------------CAACAGCA--ACAGC--------AGCAGCAGCAACAGCAGCAG---CTGCCATACGTC---CTTTCGC-------------------------CC-------------------------------------CTGGCCAGG---GT------------CC--------------------------GGCGGAG--GA--CTGC---AAG---TG-ACGCC
droGri2	scaffold_14973:22138-22382 +		GCAGCAGC-AGCAGCAG---------------------CGGCAGCATCAGCATCAGC--------------------AGCAGCAAAAACGGC--AGCACCAACAGCA-------------------GCAGCGTCAACATCAGCAGCAGCAGCAGCAGCA------------GTT------------AAAACAGCAGCAGCATC----------------------AGCAG------------------------------CAGAA---AAAACAGCAGCAGCAAC---AGCAGCAG--------------CAGCATCAG------------------------CAGCAGC--------AGCAGCAGCAGCTAGAACAACAAC-AACAGCAGCA---AACTTCG-------------------------CC-------------------------------------ACGGCTTCA---AT------------GT--------------------------GGACCGGTGGA---------TAA---TGCACCAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAGCAGC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTCAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAGGAG--GA---------GGA---TG-ACGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAG..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................GAAACGTAAGTCCAACCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAG--GA---------GGA---TG-ACGAC	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................ACCAC---------------------------------------CAGCACCACCA.................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCAGCAGC-ATCTGCAG---------------------CATCAG---------CAGC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCCC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTTAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAGGAG--GA---------GGA---TG-ACGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAGCAGC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------AAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTCAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGCGGAG--GA---------GGA---TG-ACGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................ATCAGCAGC--------------------AGGAGCCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCAGC--------------------AGGAGCCAGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GAAGCATCAGCAGC--------------------AGGAGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGCAG---------------------CATCAGAAGCATCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------..................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................AGC--------------------AGGAGCCAGAGAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................AGCAACAGCAAAA--------------------------------------------------------------------------ACAGCA....................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CAAGACGAAG---AACAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	16	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAG---C--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACAA---CACTCAATTGCA---ATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGAGCAG--GA---------GGA---TG-ACGAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................TAGCACTAGACATCAAA---------ACTGTT...........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................TAAGTCCAACCACAAGACGAAG---AACAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CACTGGAACAA---CACTCAATTGCA---ATG............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGGAACAA---CACTCAATTGCA---ATGTCC.........................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

GCAGCAGC-ATCTGCAG---------------------CATCAGAAGCATCAG---C--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTGCAATAATGTCCT-------------------------AT-------------------------------------ATGATTACG---GA------------GC--------------------------GGTCGGT--GA---------GGA---TG-ACGGG

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

GCAGCAGC-GTCAGCAA---------------------CATGTGCAACATCAGCATC--------------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA---------------A---------------------------------------------CA-----------GCAACAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCATATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------AAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTGCA---ATGTCCT-------------------------AA-------------------------------------ATGCTTACG---GT------------GA--------------------------GGAGGAG--GA---------GGA---CG-AGGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCCAC-GTCAGCAT---------------------CTGCAG---CATCAGCAGG--------------------AGCAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA---------------CCA---------------------------GCAACA--------------------------GAAACAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACCGGAACCA---CACTCAATTGCA---ATGTCCT-------------------------GG-------------------------------------ATGAATACG---AG------------CG--------------------------GGAGCGG--GA---------GCA---GG-AGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAGCATC-ATCAGCAC---------------------CACCAGCACCATCAGCACCACCAGC--------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAGAA---------------------------------------------GCAACAAGAGAAGCAACA-----------GCAACAGCAACCACATAGCACTAGACACCAAA---------ACTGTTGTCACATCA---TCGACATGGATGGCGAT---AGCACCGC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTTGA---AT------------------------------------------------------------------------------------------------------------------------------------------------GA---AG-ACAAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAGCAAC-ACCACCAGCAACACCAGCAACACCAGCAACATCAGCAACATCAGCAACG-----TCGGCACAACCAGCAGGAGCCAGATAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGTGGCCACTGGAACCA---CACTCAATTGCA---ATGTCCTGGGCCGTAAGCC-------------CA-------------------------------------ATTATTACG---AT------------GT--------------------------GGATGAG--GATGATGAGGAGGA---GG-ATGTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAGCAAC-ACCAGCAA---------------------CATCAGCAACATCGGCAACACCAGC--------------AGGAGCCAGAGAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACATCAAA---------ACTGTTGTCACATAA---TCGACATGGATGGCGAT---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACTGGAACCA---CACTCAATTGCA---ATGTCCTGGGCCGCAAAGCCCATCC-------CG-------------------------------------ATGAGTACG---AT------------GA--------TGCGGAGGAGTACGAGCAGGA---G--GAGCAGGAGGAGGA---GG-ACGGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAGCAAC-ACCAGAAGCAGCAAAAGCAA---------AAGCAGCAACATCATCAGC--------------------AGGAGCAAGATAAACGTAAGTCCAACCACAAGACGAAGACGAACAAGCAACAGCAACA---------------------------------------------GCAACA------GCAACA-----GCAAACACAGCAGCAACCACATAGCACTAGACATCGAA---------ACTGTTGTCATATAA---TCGACATGGACGGCGAC---AGCACCAC---------------------------------------CAGCACCACCACCGC--------CTCGGCGGCCACCGGAACCA---CACTCAATTGCA---ATGTTCTGGGCAGGAGTGCCC-----------AT------------------------------CGACGCGGTGACTACG---GTGAAGTGGATCAGGCGGAGGAGGAGGC--------------GGAGGAT--GA---------GGA---TG-GGGAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACACCAGC-ACCAGCAG---------------------CAGCAAC---ATCTGCAGTACCAAC--------------TGGATACAGATAAAAGTAAGTCCAAGCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAGCAGCAACCACATAGCACTAGACAGCAGA---------AGTGTTGTCACATAA---TCGACATGGACGGCGGTGAGAGCTCCAC---------------------------------------CACCACGACCACCAC--------ATCAGCGGCCACGAGCACCA---CTCTGAACTGCA---ATGTCCGGAACGGGCAACCGA----GCTCCCA-------------------------------TC-ACCCGCTTCCC--G---AG---GAGGCGGACGAGTACGA-----------------CGAGGAGGAG--GA---------GGA---CG-ACGAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCAGCAGC-AACAGCAA---------------------CAACAACAGCAGCAGCAGC--------------------AGCCACCCAACATGCATCATCATCATCAGCAGCAGCAG---CATCAACAACATCAACA---------------GCAGCAGCAGCAGCATCAGCAACATCAACAGCAGCA------GCAACA-----ACAGCAGCAGCAGCAGCAACATA-----------------------------------------------------TGCAAC---AGCAGCAG---------------------------------------CAGCAACA--ACAAC--------AGCAGCAGCAGCAGCAACAT---CCCAGCATTGGA---ATGTTT-------------------------------------------------------------------------G---AT------------GC--------------------------CAACGAG--GT---------GAA---CG-ATGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................AAC---AGCAGCAG---------------------------------------CAGCAACA--ACA...............................................................................................................................................................................................................	22	20	1.05	21	11	0	0	0	0	10
.............................................................................................................................................................................ATCAACAGCAGCA------GCAACA-----ACAGC...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................CAACAACATCAACA---------------GCAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TTGGA---ATGTTT-------------------------------------------------------------------------G---AT------------GC--------------------------CAACGAG--GT---------GA............	27	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAT---CCCAGC........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................AACAACATCAACA---------------GCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGA---ATGTTT-------------------------------------------------------------------------G---AT------------GC--------------------------CAACGAG--GT---------..............	24	1	1.00	1	0	1	0	0	0	0
...........................................ACAGCAGCAGCAGC--------------------AGCCACCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................GCAACATCAACAGCAGCA------GCAACA-----ACAGC...........................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................CATCAGCAACATCAACAGCAGCA------GC.........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................CATCAGCAACATCAACAGCAGCA------GCAACA-----................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................................................................AGCAG---CATCAACAACATCAACA---------------GCA..................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................ATCAGCAACATCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0
..........................................................................................GCATCATCATCATCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................A------GCAACA-----ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	0	5	0	0	0	0
.......................................................................................................................................................................................GCA------GCAACA-----ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
......GC-AACAGCAA---------------------CAACAACAGCAGCAGCAGC--------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................CAACA---------------GCAGCAGCAGCAGCATCAGC.................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................GCA------GCAACA-----ACAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0	0
...GCAGC-AACAGCAA---------------------CAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.20	1	0	1	0	0	0	0
...........................................................................................CATCATCATCATCAGCAGCAGCAG---C....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGCAACA--ACAAC--------AGCAGCA..............................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0
.........................................................................................................................................................................................A------GCAACA-----ACAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
....................................................................................................................................................................................................CA-----ACAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0
.................................................................................................................................TCAACA---------------GCAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.14	2	0	0	0	0	0	2
...................................................................................................................................................................................................ACA-----ACAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................................................................GCAACA-----ACAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
.......................................AACAACAGCAGCAGCAGC--------------------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................A--ACAAC--------AGCAGCAGCAGCAGC......................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GCAACA--ACAAC--------AGCAGCAGCA...........................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................ACA---------------GCAGCAGCAGCAGCATCA...................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
................................................................................................TCATCATCAGCAGCAGCAG---CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
................................................................................................................................ATCAACA---------------GCAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	1
.................................................................................................................................TCAACA---------------GCAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCAG---------------------------------------CAGCAACA--ACAAC--------AGCAGCAGCAGC.........................................................................................................................................................................................	29	17	0.06	1	0	1	0	0	0	0
...............................................................................................................................CATCAACA---------------GCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	1	0
.............................................................................................................................................................................ATCAACAGCAGCA------GCAACA-----................................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AC---AGCAGCAG---------------------------------------CAGCAACA--ACAAC--------A....................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CAACA--ACAAC--------AGCAGCAGCAGC.........................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................A------GCAACA-----ACAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................A------GCAACA-----ACAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................ACAGCAGCA------GCAACA-----ACAGCA..........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................CAACAGCAGCA------GCAACA-----ACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................GCAGCAGCAGCAGCATCAGCA................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
............AGCAA---------------------CAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
................A---------------------CAACAACAGCAGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.................................................................................................CATCATCAGCAGCAGCAG---CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACA--ACAAC--------AGCAGCAGCAGCA........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................CA------GCAACA-----ACAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ACAAC--------AGCAGCAGCAGCAGCA.....................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GCAACA--ACAAC--------AGCAGCAGCAGC.........................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.............GCAA---------------------CAACAACAGCAGCAGCAGC--------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.............GCAA---------------------CAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAGCAACA--ACAAC--------AGCAGCAGC............................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................GCAGCAG---------------------------------------CAGCAACA--ACAAC--------AGCA.................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................ATCATCAGCAGCAGCAG---C....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
................................................................................................................................ATCAACA---------------GCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAG---------------------------------------CAGCAACA--ACAAC--------A....................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................CAACA-----ACAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................CAACAGCAGCA------GCAACA-----ACAGCA..........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAAC--------AGCAGCAGCAGCAGCAACA..................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................CA-----ACAGCAGCAGCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................AACA---------------GCAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................ACAAC--------AGCAGCAGCAGCAGCAACA..................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...............AA---------------------CAACAACAGCAGCAGCAGC--------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................AAC---AGCAGCAG---------------------------------------CAGCAACA--..................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................GCAAC---AGCAGCAG---------------------------------------CAGCAACA--AC................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................GCA------GCAACA-----ACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.............GCAA---------------------CAACAACAGCAGCAGCAGC--------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................AC---AGCAGCAG---------------------------------------CAGCAACA--A.................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................GCAACA-----ACAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAT---C.............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................AGCAGCAG---------------------------------------CAGCAACA--ACAAC--------AG...................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAG---------------------------------------CAGCAACA--ACAAC--------AGCAGCAGC............................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................ACA-----ACAGCAGCAGCAGCAG................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACA--ACAAC--------AGCAGCAGCAGCAGC......................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...........CAGCAA---------------------CAACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................AGCA------GCAACA-----ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................AGCAGCA------GCAACA-----ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................GCAG---------------------------------------CAGCAACA--ACAAC--------AGCAGC...............................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................AAC---AGCAGCAG---------------------------------------CAGCAACA--ACAA..............................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
...............AA---------------------CAACAACAGCAGCAGCAGC--------------------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................ACA-----ACAGCAGCAGCAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................AGCAGCAGCAGCATCAGCA................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
................A---------------------CAACAACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAG---------------------------------------CAGCAACA--ACAAC--------AGC..................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................AGCAGCA------GCAACA-----ACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................ACA--ACAAC--------AGCAGCAGCAGC.........................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

GCTCCCAGAATCCACGA------------------------CAGGATCATCATCTCA--------------------AGGATCCAGAAAAACGTAAGTCCAACCACAAGACGAAG---AACAAGCAACAACAACA---------------------------------------------GCAACAAAAACAACAACA-----------GCAACAGCAACAAGTTAG-----------AAA----AGCCCGATGCTGCCACATGACTCTGGAAATGGACGGGGATGAGAGCACCAC------CACTGGCACAACCACA---ACAACCACCACAACCAGCACCACCAGCGG--------C--------A-------CCT---CGGCGGCCACCG---GAACCAC-------------------------CGGAATACTCGACTGTAAGCTGCTCAACAAG-CGGAGTAATCTCTACA---AA---GGA------TA--------------------------CAAGGAC--GA---------GTA---CG-ACGAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTCGCAGC---CAG------------------------------CAGCAACGACAGC--------------------AGGAGCCAGAGAAACGTAAGTCAAACCACAAGACGAAG---AACAAGCAACAGCAAAA--------------------------------------------------------------------------ACAACAGCAACAACATAGCACTAGACAGCAAGCGGCAGCCATAGGCTGCCACATCA---TCGACATGGACGGTGGC---AGCGGCGGCAGCACCAC------------------------------A---CCCACAACAAC--------ATCAGCGGCAACGGCCAGCA---CAATGAACTGCA---ACATCCACCACCACCAGCAGC----ACCACCA-------------------------------CC------ACCACCACGAAGAG---GAGTACGATGAGTACGA--------------------TGATGAG--GA------GGATGACAAAA-CTGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................A--------------------------------------------------------------------------ACAACAGCAACAACATA.........................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0	0	0	0	0	0

droPer2

GCAGCAAC-AACAGCAG---------------------CAGCAGGTGCAGCAGCAAC--------------------ATCAGCAACAGCAACATCAGCAGCAACAGCAGCAGCAA---CAGCAGCAGCAGCAACA------------ACAGCAGCAGCA------------GCA------------ACATCAGCAACAGCAAC-----ATCAGCAGCAAC-----AGCAGCAGCA---------------------------------GCAACAACAGCAGCAGC---AGCAACAT--------------------------C------------AGCAACAGCAACAGC--------AACAACAGCAGCTGCAGCCC---CCCCCAAGA---------CCCC-------------------------CA--ATGACGCTCAGTGACATAT----------------TCAACAGCC---TG------------GC--------------------------GGAGGAA--GAGTCTGCAGTGGC---GC-ACAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................................................................................................................................................ATCAGCAGCAAC-----AGCAGCAGCA---------------------------------GC.............................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
...................................................................................................................................................................................................................AGCAGCAAC-----AGCAGCAGCA---------------------------------GC.............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................CAACA------------ACAGCAGCAGCA------------GCA------------A................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................GCAACAACAGCAGCAGC---AGCAACA....................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................AAC-----AGCAGCAGCA---------------------------------GCAACA.........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
......................................................................................................ACAGCAGCAGCAA---CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................GCAACA------------ACAGCAGCAGCA------------GC..............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................GCAGCAGCA---------------------------------GCAACAACAGCAGCA................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
........................................................................................................................GCAGCAGCAGCAACA------------ACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
.............................................................................................................CAGCAA---CAGCAGCAGCAGCAACA------------........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................CAACAACAGCAGCAGC---AGCAA......................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
................................................................................................GCAGCAACAGCAGCAGCAA---CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................GCAACA------------ACAGCAGCAGCA------------GCA------------ACA..............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
................................................................................................................................AGCAACA------------ACAGCAGCAGCA------------GC..............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................................................................AGCAAC-----AGCAGCAGCA---------------------------------GCAA...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................A---------------------------------GCAACAACAGCAGCAGC---AGC........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droWil2

GCAGCAGC-AGCAGCAG---------------------CAGCAGCAGCAGCAGCAGC--------------------AGCAGCAGCAGCAAC--AACAACAACAACAACAACAAC---AA----CAACAACAACA------------ACAACAACAACA-----------------------------------------------------ACAACAACAAC-----------------A---------ACAACAACAACATCA---GCAACAGCAACAGCAAC---AACAACAA-----------CAGCAGCAGCAGCAGC------------AGCAACAACAACAAC--------AACAACAGCAGCAACAACAA---CAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------AA---TG-ACAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............AGCAG---------------------CAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	0	0	6	0
..................................................................................................................................................................................................................................................................................................CAACAA-----------CAGCAGCAGCAGCAGC------------............................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	3	0
...................................................................................................................................................................................................................................................................ACATCA---GCAACAGCAACAGCA................................................................................................................................................................................................................................................................................	21	19	0.11	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAA---CA............................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................CAGCAAC---AACAACAA-----------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................	28	20	0.10	2	0	1	0	1	0
................................................................................................................................................................................................................................................................ACAACATCA---GCAACAGCAA.....................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................CATCA---GCAACAGCAACAGCAAC---...........................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................AACAA-----------CAGCAGCAGCAGCAGC------------AGC.........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AAC--------AACAACAGCAGCAACAACAA---C.............................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................CAGCAAC---AACAACAA-----------CAGCAGCAGC..............................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................AA-----------CAGCAGCAGCAGCAGC------------AGCAA.......................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................CAACAGCAAC---AACAACAA-----------CAGCAGCAG...............................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................AACAAC--------AACAACAGCAGCAACAAC...................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........CAGCAG---------------------CAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AACAAC--------AACAACAGCAGCAACAACAA---..............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................C---AACAACAA-----------CAGCAGCAGCAGCAGC------------............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AAC--------AACAACAGCAGCAACAACAA---CA............................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................AACAACAA-----------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................GCAAC---AACAACAA-----------CAGCAGCAG...............................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................CAAC--------AACAACAGCAGCAACAACAA---CA............................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................CAAC---AACAACAA-----------CAGCAGCAGCAG............................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AACAA-----------CAGCAGCAGCAGCA..........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................AACAGCAAC---AACAACAA-----------CAGCAGC.................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AACAA-----------CAGCAGCAGCAGCAGC------------A...........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................ACAGCAAC---AACAACAA-----------CAGCAG..................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................AACAACAAC--------AACAACAGCA...........................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
......................................................................................................................AA----CAACAACAACA------------ACAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................CATCA---GCAACAGCAACAGCA................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................ACAGCAAC---AACAACAA-----------CAGCAGCA................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................AC-----------------A---------ACAACAACAACATCA---GCA............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................AGCAAC---AACAACAA-----------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................AC---AACAACAA-----------CAGCAGCAGCAGC...........................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAA---CAAA..........................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
...............................................................................CAGCAGCAGCAAC--AACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AACAA-----------CAGCAGCAGCAGCAGC------------AGCAACA.....................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................ACAAC--------AACAACAGCAGCAACA.....................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0

droVir3

GCAGCAGC-ATCATCAG---------------------CATATGCAACAACAACAGC--------------------AGCAGCATCAACAGC--AACAACAACAGCAGCA-------------TCAACAGCAACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCAGCAACAACA---------ACAGCAGCAGCAACA---ACAACAACAACAACAAC---AACAGCAG---------------------------------------CAGCAGCAACAGAAGCTTAAGCAATCGCAGGCAGCCAGCGCCG---CGGCCAATAACA---AAGCCAC-------------------------CA-----------------------------AC------CTGACCAAG---GA------------GT--------CGCC--------------CAAGCAA--AA---------GGG---CG-CCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................GCAGCCAGCGCCG---CGGCCAAT......................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................CAGCAACAGAAGCTTAAGCAATC..................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCG---CGGCCAATAACA---AAGC...........................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AG---------------------CATATGCAACAACAACAGC--------------------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CGCAGGCAGCCAGCGCCG---CGGCCAAT......................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCAAG---GA------------GT--------CGCC--------------CAAGCA............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AACAACAGC--------------------AGCAGCATCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCAGCAACAACA--GCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CAGCATCAACAGC--AACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................A-------------TCAACAGCAACA--------------------------------------------------------------------------GCAGCAAC..................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAACAACA--GCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................A--------------------------------------------------------------------------GCAGCAACAACA--GCAGCA......................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AGCAGCAGCAACAACA---------ACAGCA...........................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCAACAACA---------ACAGCAGCA........................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GCAGCAGCAACAACA---------ACAGCAGCA........................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAACA--GCAGCAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CAACAACA---------ACAGCAGCAGC......................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CAACAACA--GCAGCAGCAGCAA...............................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ACAACAACAAC---AACAGCAG---------------------------------------C...........................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ACAGCAGCAGCAACA---ACAAC..........................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCAGCAGCAGCAACAACA---------ACAGCA...........................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................A--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AACAACAAC---AACAGCAG---------------------------------------CAGCA.......................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAACAACAACAGC--------------------AGCAGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................AACAACAACAGCAGCA-------------TCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AACAACAACAGC--------------------AGCAGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAACA---------ACAGCAGCAGCAACA---AC.............................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AGC--AACAACAACAGCAGCA-------------................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCAGCAACAACA--GCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................A--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................AACAACA---------ACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGCAACAACA--GCAGCAGCAGCAA...............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAACA--GCAGCAGCAGCAACAACA---------ACAGC............................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ACAACA---------ACAGCAGCAGCAACA---...............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CAGC--AACAACAACAGCAGCA-------------................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AACAACAACAAC---AACAGCAG---------------------------------------CAGC........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ACAACAAC---AACAGCAG---------------------------------------CAGC........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCAGCAGCAACA---ACAACAACAA.....................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCA......................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ACAACA---------ACAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAACAACA--GCAGCAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAGCAGCAACAACA---------ACAGCAGCA........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAACAGC--AACAACAACAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACA--------------------------------------------------------------------------GCAGCAACAACA--GCA.........................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CAAC---AACAGCAG---------------------------------------CAGCAG......................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CAGCAACA--------------------------------------------------------------------------GCAGCAACAACA--G...........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ACAACAACAAC---AACAGCAG---------------------------------------CAGCAGC.....................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCA......................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AACA--GCAGCAGCAGCAACAA............................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGCAACAACA--GCAGCAGCAG..................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AACAGCAACA--------------------------------------------------------------------------GCAGCAACAAC...............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................C--AACAACAACAGCAGCA-------------TCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................ACAACAACAACAACAAC---AACAGCAG---------------------------------------C...........................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AACA---------ACAGCAGCAGCAACA---ACA............................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCAGCAGCAGCAACAACA---------ACAGCAGCA........................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................A-------------TCAACAGCAACA--------------------------------------------------------------------------GCAGCA....................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AACAACA---------ACAGCAGCAGCAACA---ACAAC..........................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCAACAACA---------ACAGCAGCAGCAACA---AC.............................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGC....................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CAACAAC---AACAGCAG---------------------------------------CAGCAGC.....................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................A---------ACAGCAGCAGCAACA---ACAACAACAA.....................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGCAACAACA--GCAGCAGCA...................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AACAACAACAAC---AACAGCAG---------------------------------------CAGCAGC.....................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GCAGCAACA---ACAACAACAACAACAAC---...........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ACAACAAC---AACAGCAG---------------------------------------CAGCAG......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CAACAACAAC---AACAGCAG---------------------------------------CA..........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CAACAGCAACA--------------------------------------------------------------------------GCAGCAAC..................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................ACA--GCAGCAGCAGCAACAAC...........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................GCAACAACA---------ACAGCAGCAGCAAC...................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CAAC---AACAGCAG---------------------------------------CAGCAGCAAC..................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AACAACAAC---AACAGCAG---------------------------------------CAGCAGCAAC..................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACA---------ACAGCAGCAGCAACA---ACAAC..........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................AGCAACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGC.......................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCAACAACA---------ACAGCAGCAGC......................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CAACAGCAACA--------------------------------------------------------------------------GCAGCAACAAC...............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCAG.....................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CAACAAC---AACAGCAG---------------------------------------CAGCAG......................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACAACA--GCAGCAGCAGCAACAAC...........................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCAACAACA---------ACAGCAGCAGCAACA---...............................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACAGC--AACAACAACAGCAGCA-------------................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ACAACA---------ACAGCAGCAGCAACA---AC.............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ACAACAAC---AACAGCAG---------------------------------------CA..........................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................A---------ACAGCAGCAGCAACA---ACAACAACA......................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................GC--------------------AGCAGCATCAACAGC--A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................ACAACA--GCAGCAGCAGCAACAACA---------AC...............................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AAC---AACAGCAG---------------------------------------CAGCAGCA....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................AACA--------------------------------------------------------------------------GCAGCAACAACA--GCAGCA......................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CAGCAGCAGCAACAACA---------AC...............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCAGCAACAACA--GCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAGCAAC-AACAGCAG---------------------CAACAGCATCAGCAGCAGC--------------------AGCAGCAACAACAACAACAGCAACAGCAGCAGCAGCAG---CTACAACAACAGCAACA---------------G---------CAGCAACAACAACAGCAT----------------------------------------------TAGCAGCAG---CAACA---------ACAGCAGCAACAGCA---TCAGCAGCAGCAGCAAC---AACAACAA---------------------------------------CAACAGCA--ACAGC--------AGCAGCAGCAACAGCAGCAG---CTGCCATACGTC---CTTTCGC-------------------------CC-------------------------------------CTGGCCAGG---GT------------CC--------------------------GGCGGAG--GA--CTGC---AAG---TG-ACGCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................ACA---------------G---------CAGCAACAACAACAGCAT----------------------------------------------...........................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................ACAGCA---TCAGCAGCAGCAGCAAC---...........................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	1	0
...............AG---------------------CAACAGCATCAGCAGCAGC--------------------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................AGCAACAGCA---TCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	1
...................................................................................................................................AACA---------------G---------CAGCAACAACAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................TCAGCAGCAGCAGCAAC---AACAACAA---------------------------------------CA..........................................................................................................................................................................................................................	27	16	0.06	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................CAG---CAACA---------ACAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................GCAGCAG---CAACA---------ACAGCAGCA........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................A---TCAGCAGCAGCAGCAAC---AACA.......................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................CAACAA---------------------------------------CAACAGCA--ACAGC--------A....................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................ATCAGCAGCAGC--------------------AGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACAGCA--ACAGC--------AGCAGCA..............................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.......................................................................................ACAACAACAGCAACAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................A---TCAGCAGCAGCAGCAAC---AAC........................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACAGCA--ACAGC--------AGCAGCAGCAAC.........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
...............AG---------------------CAACAGCATCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CA--ACAGC--------AGCAGCAGCAACAGCAGCA..................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AGC--------AGCAGCAGCAACAGCAGCA..................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................AA---------------------------------------CAACAGCA--ACAGC--------AGCAG................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................CAACAACAACAGCAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................CAGCAGCAAC---AACAACAA---------------------------------------CAA.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................GCAGCAG---CAACA---------ACAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.CAGCAAC-AACAGCAG---------------------CAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................ACAA---------------------------------------CAACAGCA--ACAGC--------AGCAGCAGCA...........................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................C--------AGCAGCAGCAACAGCAGCAG---C.............................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................AGCAACAGCA---TCAGCAGC.......................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAACAGCA--ACAGC--------AGCAGCAGC............................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
.............................................................................AGCAGCAACAACAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................ACA---------------G---------CAGCAACAACAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
..........................................................................................ACAACAGCAACAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..................................................................................CAACAACAACAACAGCAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0

droGri2

GCAGCAGC-AGCAGCAG---------------------CGGCAGCATCAGCATCAGC--------------------AGCAGCAAAAACGGC--AGCACCAACAGCA-------------------GCAGCGTCAACATCAGCAGCAGCAGCAGCAGCA------------GTT------------AAAACAGCAGCAGCATC----------------------AGCAG------------------------------CAGAA---AAAACAGCAGCAGCAAC---AGCAGCAG--------------CAGCATCAG------------------------CAGCAGC--------AGCAGCAGCAGCTAGAACAACAAC-AACAGCAGCA---AACTTCG-------------------------CC-------------------------------------ACGGCTTCA---AT------------GT--------------------------GGACCGGTGGA---------TAA---TGCACCAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA---AT------------GT--------------------------GGACCGGTGGA---------TAA---TG......	24	20	0.25	5	0	5
...GCAGC-AGCAGCAG---------------------CGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	5	0
..AGCAGC-AGCAGCAG---------------------CGGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0
.CAGCAGC-AGCAGCAG---------------------CGGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0
...........................................................................................................................................................................................................................................................................................................................TCAG------------------------CAGCAGC--------AGCAGCAGCA...........................................................................................................................................................................................	21	20	0.10	2	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA---AT------------GT--------------------------GGACCGGTGGA---------TAA---TGC.....	24	20	0.10	2	0	2
....................................................................................................AACAGCA-------------------GCAGCGTCAACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA---AT------------GT--------------------------GGACCGGTGGA---------TAA---TGC.....	25	20	0.05	1	0	1
....CAGC-AGCAGCAG---------------------CGGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0

dsi_27112

x:10555546-10555695 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.55	-23.5	-23.5